RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 SMARCC1Q92922 1105 aaPredicted RBP12.27□□□□□ -0.45
VCL-201ENST00000211998 NEUROD6Q96NK8 337 aa12.27□□□□□ -0.45
VCL-201ENST00000211998 RBM27Q9P2N5 1060 aaKnown RBP12.27□□□□□ -0.45
VCL-201ENST00000211998 XBP1P17861 261 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 STK3Q13188 491 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 EPS15P42566 896 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 SMTNL1A8MU46 457 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 PIP4K2AP48426 406 aaPredicted RBP12.26□□□□□ -0.45
VCL-201ENST00000211998 WASHC4Q2M389 1173 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 CTR9Q6PD62 1173 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 CCDC148Q8NFR7 591 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 IVLP07476 585 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 TDO2P48775 406 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 DACH1Q9UI36 760 aa12.26□□□□□ -0.45
VCL-201ENST00000211998 EHBP1L1Q8N3D4 1523 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 HIP1O00291 1037 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 BAG4O95429 457 aaKnown RBP12.25□□□□□ -0.45
VCL-201ENST00000211998 NEFHP12036 1026 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 PPP2R1AP30153 589 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 RSPH14Q9UHP6 348 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 MTHFSP49914 203 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 AIMP1Q12904 312 aaKnown RBP12.25□□□□□ -0.45
VCL-201ENST00000211998 CFAP100Q494V2 611 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 TTC31Q49AM3 519 aaPredicted RBP12.25□□□□□ -0.45
VCL-201ENST00000211998 C20orf194Q5TEA3 1177 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 EPB41L2O43491 1005 aaKnown RBP12.25□□□□□ -0.45
VCL-201ENST00000211998 CLASRPQ8N2M8 674 aaKnown RBP12.25□□□□□ -0.45
VCL-201ENST00000211998 NEMFO60524 1076 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 ATP2B1P20020 1258 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 TMEM132EQ6IEE7 984 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 RASSF4Q9H2L5 321 aa12.25□□□□□ -0.45
VCL-201ENST00000211998 C10orf67Q8IYJ2 551 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 FSD1Q9BTV5 496 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 TBC1D2BQ9UPU7 963 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 GBP2P32456 591 aaPredicted RBP12.24□□□□□ -0.45
VCL-201ENST00000211998 UVSSAQ2YD98 709 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 ERC1Q8IUD2 1116 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 OGFRQ9NZT2 677 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 PRG4Q92954 1404 aaPredicted RBP12.24□□□□□ -0.45
VCL-201ENST00000211998 KIF4BQ2VIQ3 1234 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 CFAP45Q9UL16 551 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 SART3Q15020 963 aaKnown RBP12.24□□□□□ -0.45
VCL-201ENST00000211998 ABTB2Q8N961 1025 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 JMYQ8N9B5 988 aa12.24□□□□□ -0.45
VCL-201ENST00000211998 SNW1Q13573 536 aaKnown RBP12.23□□□□□ -0.45
VCL-201ENST00000211998 KIF6Q6ZMV9 814 aa12.23□□□□□ -0.45
VCL-201ENST00000211998 TXNDC2Q86VQ3 553 aa12.23□□□□□ -0.45
VCL-201ENST00000211998 MCM3P25205 808 aa12.23□□□□□ -0.45
VCL-201ENST00000211998 LRSAM1Q6UWE0 723 aa12.23□□□□□ -0.45
VCL-201ENST00000211998 KIF5CO60282 957 aa12.23□□□□□ -0.45
VCL-201ENST00000211998 ANKRD1Q15327 319 aa12.23□□□□□ -0.45
VCL-201ENST00000211998 ZNF692Q9BU19 519 aaPredicted RBP12.23□□□□□ -0.45
VCL-201ENST00000211998 TMX1Q9H3N1 280 aa12.23□□□□□ -0.45
VCL-201ENST00000211998 CFAP70Q5T0N1 1121 aa12.22□□□□□ -0.45
VCL-201ENST00000211998 IFT140Q96RY7 1462 aa12.22□□□□□ -0.45
VCL-201ENST00000211998 MICALL1Q8N3F8 863 aa12.22□□□□□ -0.45
VCL-201ENST00000211998 AFAP1Q8N556 730 aa12.22□□□□□ -0.45
VCL-201ENST00000211998 MAP2K1Q02750 393 aaPredicted RBP12.22□□□□□ -0.45
VCL-201ENST00000211998 FEZ1Q99689 392 aa12.22□□□□□ -0.45
VCL-201ENST00000211998 MRC2Q9UBG0 1479 aa12.22□□□□□ -0.45
VCL-201ENST00000211998 POTEB2H3BUK9 544 aa12.22□□□□□ -0.45
VCL-201ENST00000211998 SURF6O75683 361 aaKnown RBP12.22□□□□□ -0.45
VCL-201ENST00000211998 SEPT7Q16181 437 aaKnown RBP12.22□□□□□ -0.45
VCL-201ENST00000211998 GOLGA6L10A0A0M3HER8 536 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 NUTM2GQ5VZR2 741 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 TSR2Q969E8 191 aaKnown RBP12.21□□□□□ -0.45
VCL-201ENST00000211998 C9orf84Q5VXU9 1444 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 KIAA1107Q9UPP5 1409 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 HS1BP3Q53T59 392 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 ZFYVE27Q5T4F4 411 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 CCDC91Q7Z6B0 441 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 THEMISQ8N1K5 641 aaPredicted RBP12.21□□□□□ -0.45
VCL-201ENST00000211998 ZSCAN31Q96LW9 406 aaPredicted RBP12.21□□□□□ -0.45
VCL-201ENST00000211998 PDRG1Q9NUG6 133 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 PPP6R1Q9UPN7 881 aa12.21□□□□□ -0.45
VCL-201ENST00000211998 PRKAR2BP31323 418 aa12.21□□□□□ -0.46
VCL-201ENST00000211998 ESCO1Q5FWF5 840 aa12.21□□□□□ -0.46
VCL-201ENST00000211998 ATF7IPQ6VMQ6 1270 aa12.21□□□□□ -0.46
VCL-201ENST00000211998 AEBP2Q6ZN18 517 aaPredicted RBP12.21□□□□□ -0.46
VCL-201ENST00000211998 TATP17735 454 aaPredicted RBP12.21□□□□□ -0.46
VCL-201ENST00000211998 KIAA1328Q86T90 577 aa12.21□□□□□ -0.46
VCL-201ENST00000211998 CKAP2LQ8IYA6 745 aa12.21□□□□□ -0.46
VCL-201ENST00000211998 TBC1D32Q96NH3 1257 aa12.21□□□□□ -0.46
VCL-201ENST00000211998 LUC7LQ9NQ29 371 aaKnown RBP12.21□□□□□ -0.46
VCL-201ENST00000211998 SLC52A1Q9NWF4 448 aa12.21□□□□□ -0.46
VCL-201ENST00000211998 ANKRD62A6NC57 917 aa12.2□□□□□ -0.46
VCL-201ENST00000211998 FAM177BA6PVY3 158 aa12.2□□□□□ -0.46
VCL-201ENST00000211998 SLC3A2P08195 630 aaKnown RBP12.2□□□□□ -0.46
VCL-201ENST00000211998 PROSER2Q86WR7 435 aaPredicted RBP12.2□□□□□ -0.46
VCL-201ENST00000211998 ANO10Q9NW15 660 aa12.2□□□□□ -0.46
VCL-201ENST00000211998 FERMT3Q86UX7 667 aa12.2□□□□□ -0.46
VCL-201ENST00000211998 GDPD2Q9HCC8 539 aa12.2□□□□□ -0.46
VCL-201ENST00000211998 HECW1Q76N89 1606 aa12.2□□□□□ -0.46
VCL-201ENST00000211998 TWISTNBQ3B726 338 aaPredicted RBP12.2□□□□□ -0.46
VCL-201ENST00000211998 PRAM1Q96QH2 718 aa12.2□□□□□ -0.46
VCL-201ENST00000211998 GSDMDP57764 484 aa12.19□□□□□ -0.46
VCL-201ENST00000211998 ZNF397Q8NF99 534 aaPredicted RBP12.19□□□□□ -0.46
VCL-201ENST00000211998 SLC26A8Q96RN1 970 aa12.19□□□□□ -0.46
VCL-201ENST00000211998 RAI14Q9P0K7 980 aa12.19□□□□□ -0.46
VCL-201ENST00000211998 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms