RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Ttc41Q692V3 1318 aa11.16□□□□□ -0.62
Trim39-201ENSMUST00000042717 ZgpatQ8VDM1 511 aa11.16□□□□□ -0.62
Trim39-201ENSMUST00000042717 Siglec1Q62230 1695 aa11.15□□□□□ -0.62
Trim39-201ENSMUST00000042717 Q3TQI7 289 aaKnown RBP11.15□□□□□ -0.62
Trim39-201ENSMUST00000042717 Rtl5Q5DTT4 599 aa11.15□□□□□ -0.62
Trim39-201ENSMUST00000042717 Amotl1Q9D4H4 968 aa11.15□□□□□ -0.62
Trim39-201ENSMUST00000042717 Vamp4O70480 141 aa11.15□□□□□ -0.62
Trim39-201ENSMUST00000042717 Ptpn23Q6PB44 1692 aa11.15□□□□□ -0.62
Trim39-201ENSMUST00000042717 Tet3Q8BG87 1668 aa11.15□□□□□ -0.62
Trim39-201ENSMUST00000042717 Robo1O89026 1612 aa11.15□□□□□ -0.63
Trim39-201ENSMUST00000042717 Trim58Q5NCC9 485 aa11.15□□□□□ -0.63
Trim39-201ENSMUST00000042717 Ccdc155Q80VJ8 648 aa11.15□□□□□ -0.63
Trim39-201ENSMUST00000042717 ThemisQ8BGW0 636 aa11.14□□□□□ -0.63
Trim39-201ENSMUST00000042717 Cc2d1aQ8K1A6 943 aa11.14□□□□□ -0.63
Trim39-201ENSMUST00000042717 Plekhm2Q80TQ5 1018 aa11.14□□□□□ -0.63
Trim39-201ENSMUST00000042717 Ybx3Q9JKB3 361 aaKnown RBP11.14□□□□□ -0.63
Trim39-201ENSMUST00000042717 Bcl11aQ9QYE3 773 aa11.14□□□□□ -0.63
Trim39-201ENSMUST00000042717 Armcx1Q9CX83 456 aa11.13□□□□□ -0.63
Trim39-201ENSMUST00000042717 Speer4bQ9D9F7 267 aa11.13□□□□□ -0.63
Trim39-201ENSMUST00000042717 Ccdc171E9Q1U1 1324 aa11.13□□□□□ -0.63
Trim39-201ENSMUST00000042717 Znf526Q8BI66 675 aa11.13□□□□□ -0.63
Trim39-201ENSMUST00000042717 Atp10bB1AWN4 1474 aa11.13□□□□□ -0.63
Trim39-201ENSMUST00000042717 Chmp7Q8R1T1 451 aa11.12□□□□□ -0.63
Trim39-201ENSMUST00000042717 Bcl2l12Q9D3J3 255 aa11.12□□□□□ -0.63
Trim39-201ENSMUST00000042717 Sos1Q62245 1319 aa11.12□□□□□ -0.63
Trim39-201ENSMUST00000042717 Bcl2l13P59017 434 aa11.12□□□□□ -0.63
Trim39-201ENSMUST00000042717 Nkx2-3P97334 362 aa11.12□□□□□ -0.63
Trim39-201ENSMUST00000042717 Gm21680A0A0G2JGR8 267 aa11.11□□□□□ -0.63
Trim39-201ENSMUST00000042717 Arhgef1Q61210 920 aaKnown RBP11.11□□□□□ -0.63
Trim39-201ENSMUST00000042717 Slc5a4bQ91ZP4 660 aa11.11□□□□□ -0.63
Trim39-201ENSMUST00000042717 KarsQ99MN1 595 aaKnown RBP11.11□□□□□ -0.63
Trim39-201ENSMUST00000042717 Ahnak2E9PYB0 1738 aaKnown RBP11.11□□□□□ -0.63
Trim39-201ENSMUST00000042717 Plekhd1B2RPU2 505 aa11.11□□□□□ -0.63
Trim39-201ENSMUST00000042717 Btbd11Q6GQW0 1109 aa11.11□□□□□ -0.63
Trim39-201ENSMUST00000042717 Maco1Q7TQE6 664 aaKnown RBP11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Simc1E9Q6E9 1354 aa11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Nsd3Q6P2L6 1439 aa11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Slit2Q9R1B9 1521 aa11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Q3UPC7 1272 aa11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Chpf2Q3UU43 768 aa11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Prkrip1Q9CWV6 186 aaKnown RBP11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Pdzd9Q9D9M4 266 aa11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Larp1Q6ZQ58 1072 aaKnown RBP11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 Mbd3Q9Z2D8 285 aaKnown RBP11.1□□□□□ -0.63
Trim39-201ENSMUST00000042717 4930572O03RikQ8C5Y0 211 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Abca15E9PWH4 1668 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Zmym3Q9JLM4 1370 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Gm21663A0A0G2JE01 267 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Gm7361D3Z6R1 267 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 5031410I06RikE9Q4E0 267 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Gm1979E9QAN3 267 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Gm5862K7N5V5 267 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Gm10220K7N660 267 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Fkbp4P30416 458 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Aifm3Q3TY86 605 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Ric3Q8BPM6 367 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Eno4Q8C042 619 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Dbr1Q923B1 550 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Arfgef2A2A5R2 1792 aa11.09□□□□□ -0.63
Trim39-201ENSMUST00000042717 Aox2Q5SGK3 1345 aa11.08□□□□□ -0.64
Trim39-201ENSMUST00000042717 Supt16hQ920B9 1047 aa11.08□□□□□ -0.64
Trim39-201ENSMUST00000042717 Psrc1Q9D0P7 329 aa11.08□□□□□ -0.64
Trim39-201ENSMUST00000042717 Cyp2d12Q8BVD2 504 aa11.08□□□□□ -0.64
Trim39-201ENSMUST00000042717 Phkg2Q9DB30 406 aa11.07□□□□□ -0.64
Trim39-201ENSMUST00000042717 B4galnt3Q6L8S8 986 aa11.07□□□□□ -0.64
Trim39-201ENSMUST00000042717 Sv2bQ8BG39 683 aa11.07□□□□□ -0.64
Trim39-201ENSMUST00000042717 Cluap1Q8R3P7 413 aa11.07□□□□□ -0.64
Trim39-201ENSMUST00000042717 Lrrc59Q922Q8 307 aaKnown RBP11.07□□□□□ -0.64
Trim39-201ENSMUST00000042717 Nolc1E9Q5C9 702 aaKnown RBP11.07□□□□□ -0.64
Trim39-201ENSMUST00000042717 Fam83gQ5SWY7 812 aa11.07□□□□□ -0.64
Trim39-201ENSMUST00000042717 Asic4Q7TNS7 539 aa11.06□□□□□ -0.64
Trim39-201ENSMUST00000042717 Foxp4Q9DBY0 795 aaKnown RBP11.06□□□□□ -0.64
Trim39-201ENSMUST00000042717 Bcl9lQ67FY2 1494 aa11.06□□□□□ -0.64
Trim39-201ENSMUST00000042717 Duxf3A0A0N4SV92 674 aa11.06□□□□□ -0.64
Trim39-201ENSMUST00000042717 Slc5a1Q8C3K6 665 aa11.06□□□□□ -0.64
Trim39-201ENSMUST00000042717 Slx1bQ8BX32 270 aa11.05□□□□□ -0.64
Trim39-201ENSMUST00000042717 Pard3Q99NH2 1333 aa11.05□□□□□ -0.64
Trim39-201ENSMUST00000042717 Slit1Q80TR4 1531 aa11.05□□□□□ -0.64
Trim39-201ENSMUST00000042717 Eif3bQ8JZQ9 803 aaKnown RBP11.05□□□□□ -0.64
Trim39-201ENSMUST00000042717 Aldh1l1Q8R0Y6 902 aa11.05□□□□□ -0.64
Trim39-201ENSMUST00000042717 Nup153E9Q3G8 1462 aaKnown RBP11.05□□□□□ -0.64
Trim39-201ENSMUST00000042717 Zfp142G5E869 1843 aa11.05□□□□□ -0.64
Trim39-201ENSMUST00000042717 Trpm3Q5F4S9 1721 aa11.05□□□□□ -0.64
Trim39-201ENSMUST00000042717 Sf3b2Q3UJB0 878 aaKnown RBP11.04□□□□□ -0.64
Trim39-201ENSMUST00000042717 Eif4a1P60843 406 aaKnown RBP11.04□□□□□ -0.64
Trim39-201ENSMUST00000042717 Anp32aO35381 247 aa11.03□□□□□ -0.64
Trim39-201ENSMUST00000042717 Chl1P70232 1209 aa11.03□□□□□ -0.64
Trim39-201ENSMUST00000042717 Zeb2Q9R0G7 1215 aa11.03□□□□□ -0.64
Trim39-201ENSMUST00000042717 Fgd1P52734 960 aa11.02□□□□□ -0.65
Trim39-201ENSMUST00000042717 Cnnm1Q0GA42 951 aa11.02□□□□□ -0.65
Trim39-201ENSMUST00000042717 Abcc12Q80WJ6 1366 aa11.02□□□□□ -0.65
Trim39-201ENSMUST00000042717 Rlbp1Q9Z275 317 aa11.01□□□□□ -0.65
Trim39-201ENSMUST00000042717 Nyap1Q6PFX7 833 aa11.01□□□□□ -0.65
Trim39-201ENSMUST00000042717 ApobrQ8VBT6 942 aa11.01□□□□□ -0.65
Trim39-201ENSMUST00000042717 Atf5O70191 283 aa11□□□□□ -0.65
Trim39-201ENSMUST00000042717 Ccdc129Q14B48 1034 aa11□□□□□ -0.65
Trim39-201ENSMUST00000042717 MvpQ9EQK5 861 aa11□□□□□ -0.65
Trim39-201ENSMUST00000042717 PigbQ9JJQ0 542 aa11□□□□□ -0.65
Trim39-201ENSMUST00000042717 MarsQ68FL6 902 aaKnown RBP11□□□□□ -0.65
Trim39-201ENSMUST00000042717 GckrQ91X44 587 aa11□□□□□ -0.65
Retrieved 100 of 22,080 RNA–protein pairs in 37.5 ms