RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	TY1B-PL	Q12414	1755 aa	Known RBP	6.62	□□□□□ -1.35
CAF16	YFL028C	YOR1	P53049	1477 aa		6.61	□□□□□ -1.35
CAF16	YFL028C	SQT1	P35184	431 aa		6.61	□□□□□ -1.35
CAF16	YFL028C	MRPL16	P38064	232 aa		6.61	□□□□□ -1.35
CAF16	YFL028C	NCL1	P38205	684 aa	Known RBP	6.61	□□□□□ -1.35
CAF16	YFL028C	YAF9	P53930	226 aa		6.61	□□□□□ -1.35
CAF16	YFL028C	GCR1	P07261	785 aa		6.6	□□□□□ -1.35
CAF16	YFL028C	GRX1	P25373	110 aa	Known RBP	6.6	□□□□□ -1.35
CAF16	YFL028C	PMT7	Q06644	662 aa		6.6	□□□□□ -1.35
CAF16	YFL028C	MRL1	Q06815	381 aa		6.6	□□□□□ -1.35
CAF16	YFL028C	ESC1	Q03661	1658 aa	Known RBP	6.59	□□□□□ -1.35
CAF16	YFL028C	CDC19	P00549	500 aa	Known RBP	6.59	□□□□□ -1.35
CAF16	YFL028C	CIT2	P08679	460 aa		6.59	□□□□□ -1.35
CAF16	YFL028C	STI1	P15705	589 aa	Known RBP RIP-Chip data	6.59	□□□□□ -1.35	not detected
CAF16	YFL028C	DUT1	P33317	147 aa		6.59	□□□□□ -1.35
CAF16	YFL028C	XKS1	P42826	600 aa		6.59	□□□□□ -1.35
CAF16	YFL028C	OSW7	P43611	510 aa		6.59	□□□□□ -1.35
CAF16	YFL028C	PPT1	P53043	513 aa		6.59	□□□□□ -1.35
CAF16	YFL028C	DOS2	P54858	310 aa		6.59	□□□□□ -1.35
CAF16	YFL028C	YOR131C	Q12486	218 aa		6.59	□□□□□ -1.35
CAF16	YFL028C	SMC4	Q12267	1418 aa		6.59	□□□□□ -1.36
CAF16	YFL028C	DNF1	P32660	1571 aa		6.58	□□□□□ -1.36
CAF16	YFL028C	UBP2	Q01476	1272 aa		6.58	□□□□□ -1.36
CAF16	YFL028C	TDA5	Q06417	326 aa	Known RBP	6.58	□□□□□ -1.36
CAF16	YFL028C	BDF2	Q07442	638 aa		6.58	□□□□□ -1.36
CAF16	YFL028C	RTT10	Q08924	1013 aa		6.58	□□□□□ -1.36
CAF16	YFL028C	FAL1	Q12099	399 aa	Known RBP	6.58	□□□□□ -1.36
CAF16	YFL028C	PAN1	P32521	1480 aa		6.58	□□□□□ -1.36
CAF16	YFL028C	YJL181W	P46987	611 aa		6.57	□□□□□ -1.36
CAF16	YFL028C	YGR053C	P53234	283 aa		6.57	□□□□□ -1.36
CAF16	YFL028C	PEX13	P80667	386 aa		6.57	□□□□□ -1.36
CAF16	YFL028C	OPI10	Q08202	246 aa		6.57	□□□□□ -1.36
CAF16	YFL028C	MMS22	Q06164	1454 aa		6.56	□□□□□ -1.36
CAF16	YFL028C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	6.56	□□□□□ -1.36	not detected
CAF16	YFL028C	RIM11	P38615	370 aa		6.56	□□□□□ -1.36
CAF16	YFL028C	PEX28	P38848	579 aa		6.56	□□□□□ -1.36
CAF16	YFL028C	YER156C	P40093	338 aa	Known RBP	6.56	□□□□□ -1.36
CAF16	YFL028C	SAP155	P43612	1002 aa		6.56	□□□□□ -1.36
CAF16	YFL028C	RPN4	Q03465	531 aa		6.56	□□□□□ -1.36
CAF16	YFL028C	RSC2	Q06488	889 aa		6.56	□□□□□ -1.36
CAF16	YFL028C	CMR1	Q12510	522 aa	Known RBP	6.56	□□□□□ -1.36
CAF16	YFL028C	RPP1A	P05318	106 aa	Predicted RBP	6.55	□□□□□ -1.36
CAF16	YFL028C	RAD4	P14736	754 aa		6.55	□□□□□ -1.36
CAF16	YFL028C	IDI1	P15496	288 aa		6.55	□□□□□ -1.36
CAF16	YFL028C	BAS1	P22035	811 aa		6.55	□□□□□ -1.36
CAF16	YFL028C	NPR1	P22211	790 aa		6.55	□□□□□ -1.36
CAF16	YFL028C	YKL069W	P36088	180 aa		6.55	□□□□□ -1.36
CAF16	YFL028C	HUL5	P53119	910 aa		6.55	□□□□□ -1.36
CAF16	YFL028C	RPA190	P10964	1664 aa	Known RBP	6.55	□□□□□ -1.36
CAF16	YFL028C	FUS1	P11710	512 aa		6.54	□□□□□ -1.36
CAF16	YFL028C	RAD27	P26793	382 aa		6.54	□□□□□ -1.36
CAF16	YFL028C	TAT2	P38967	592 aa		6.54	□□□□□ -1.36
CAF16	YFL028C	SPF1	P39986	1215 aa	Known RBP	6.54	□□□□□ -1.36
CAF16	YFL028C	TIM54	P47045	478 aa		6.54	□□□□□ -1.36
CAF16	YFL028C	ALG12	P53730	551 aa		6.54	□□□□□ -1.36
CAF16	YFL028C	NAN1	Q02931	896 aa	Known RBP	6.54	□□□□□ -1.36
CAF16	YFL028C	YLR346C	Q06139	101 aa		6.54	□□□□□ -1.36
CAF16	YFL028C	OPT2	Q06593	877 aa		6.54	□□□□□ -1.36
CAF16	YFL028C	TMA46	Q12000	345 aa	Known RBP	6.54	□□□□□ -1.36
CAF16	YFL028C	CCP1	P00431	361 aa		6.53	□□□□□ -1.36
CAF16	YFL028C	OSH7	P38755	437 aa		6.53	□□□□□ -1.36
CAF16	YFL028C	YGL140C	P53120	1219 aa		6.53	□□□□□ -1.36
CAF16	YFL028C	EEB1	Q02891	456 aa		6.53	□□□□□ -1.36
CAF16	YFL028C	SPP41	P38904	1435 aa		6.52	□□□□□ -1.37
CAF16	YFL028C	MSH3	P25336	1018 aa		6.52	□□□□□ -1.37
CAF16	YFL028C	BUD6	P41697	788 aa		6.52	□□□□□ -1.37
CAF16	YFL028C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	6.52	□□□□□ -1.37	not detected
CAF16	YFL028C	HDA2	Q06629	674 aa		6.52	□□□□□ -1.37
CAF16	YFL028C	GLO4	Q12320	285 aa		6.52	□□□□□ -1.37
CAF16	YFL028C	TRK1	P12685	1235 aa		6.51	□□□□□ -1.37
CAF16	YFL028C	SEC23	P15303	768 aa	Known RBP	6.51	□□□□□ -1.37
CAF16	YFL028C	SHU2	P38957	223 aa		6.51	□□□□□ -1.37
CAF16	YFL028C	KRE33	P53914	1056 aa	Known RBP	6.51	□□□□□ -1.37
CAF16	YFL028C	NAM8	Q00539	523 aa	Known RBP	6.51	□□□□□ -1.37
CAF16	YFL028C	MYO4	P32492	1471 aa		6.5	□□□□□ -1.37
CAF16	YFL028C	RRP14	P36080	434 aa	Known RBP	6.5	□□□□□ -1.37
CAF16	YFL028C	INP51	P40559	946 aa	Known RBP	6.5	□□□□□ -1.37
CAF16	YFL028C	GNP1	P48813	663 aa		6.5	□□□□□ -1.37
CAF16	YFL028C	TYW3	P53177	273 aa		6.5	□□□□□ -1.37
CAF16	YFL028C	SCW11	P53189	542 aa		6.5	□□□□□ -1.37
CAF16	YFL028C	NOG1	Q02892	647 aa	Known RBP	6.5	□□□□□ -1.37
CAF16	YFL028C	HEH2	Q03281	663 aa		6.5	□□□□□ -1.37
CAF16	YFL028C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	6.5	□□□□□ -1.37	not detected
CAF16	YFL028C	TY1B-JR2	P47100	1755 aa	Known RBP	6.49	□□□□□ -1.37
CAF16	YFL028C	TY1B-ER2	Q03619	1755 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	TY1B-MR1	Q04214	1755 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	TY1B-MR2	Q04670	1755 aa	Known RBP	6.49	□□□□□ -1.37
CAF16	YFL028C	TY1B-LR1	Q12088	1755 aa	Known RBP	6.49	□□□□□ -1.37
CAF16	YFL028C	TY1B-NL1	Q12112	1755 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	TY1B-GR1	Q12141	1755 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	TY1B-BL	Q12490	1755 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	PRP5	P21372	849 aa	Predicted RBP	6.49	□□□□□ -1.37
CAF16	YFL028C	TFA2	P36145	328 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	GLY1	P37303	387 aa	Known RBP	6.49	□□□□□ -1.37
CAF16	YFL028C	BRE2	P43132	505 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	YJR124C	P47159	448 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	YMR265C	Q03508	461 aa	Known RBP	6.49	□□□□□ -1.37
CAF16	YFL028C	MET5	P47169	1442 aa		6.49	□□□□□ -1.37
CAF16	YFL028C	TRP2	P00899	507 aa	Known RBP	6.48	□□□□□ -1.37
CAF16	YFL028C	HEM13	P11353	328 aa	Known RBP	6.48	□□□□□ -1.37

Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms