RNA–Protein interactions for RNA: YDR012W

RPL4B, Transcript of Ribosomal 60S subunit protein L4B, yeast

Gene RPL4B, Length 1,089 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPL4B	YDR012W	SPO22	P40511	975 aa		11.42	□□□□□ -0.58
RPL4B	YDR012W	KRI1	P42846	591 aa	Known RBP	11.42	□□□□□ -0.58
RPL4B	YDR012W	ALG2	P43636	503 aa		11.42	□□□□□ -0.58
RPL4B	YDR012W	FOL1	P53848	824 aa		11.42	□□□□□ -0.58
RPL4B	YDR012W	ISW2	Q08773	1120 aa		11.42	□□□□□ -0.58
RPL4B	YDR012W	TY3A-G	Q12173	290 aa		11.42	□□□□□ -0.58
RPL4B	YDR012W	TY3A-I	Q99219	290 aa		11.42	□□□□□ -0.58
RPL4B	YDR012W	RPC31	P17890	251 aa		11.41	□□□□□ -0.58
RPL4B	YDR012W	RPL8B	P29453	256 aa	Known RBP	11.41	□□□□□ -0.58
RPL4B	YDR012W	UBP9	P39967	754 aa		11.41	□□□□□ -0.58
RPL4B	YDR012W	RPT6	Q01939	405 aa	Known RBP	11.41	□□□□□ -0.58
RPL4B	YDR012W	VPS30	Q02948	557 aa		11.41	□□□□□ -0.58
RPL4B	YDR012W	EST2	Q06163	884 aa		11.41	□□□□□ -0.58
RPL4B	YDR012W	PGA3	Q12746	312 aa	Known RBP	11.41	□□□□□ -0.58
RPL4B	YDR012W	SAM2	P19358	384 aa	Known RBP	11.4	□□□□□ -0.58
RPL4B	YDR012W	MAK31	P23059	88 aa		11.4	□□□□□ -0.58
RPL4B	YDR012W	VPS45	P38932	577 aa		11.4	□□□□□ -0.58
RPL4B	YDR012W	ATG1	P53104	897 aa		11.4	□□□□□ -0.58
RPL4B	YDR012W	YAF9	P53930	226 aa		11.4	□□□□□ -0.58
RPL4B	YDR012W	UBX5	Q06682	500 aa		11.4	□□□□□ -0.58
RPL4B	YDR012W	TFC6	Q06339	672 aa		11.39	□□□□□ -0.59
RPL4B	YDR012W	SRS2	P12954	1174 aa		11.38	□□□□□ -0.59
RPL4B	YDR012W	VMA2	P16140	517 aa	Known RBP	11.38	□□□□□ -0.59
RPL4B	YDR012W	DIT2	P21595	489 aa		11.38	□□□□□ -0.59
RPL4B	YDR012W	YKR018C	P36114	725 aa		11.38	□□□□□ -0.59
RPL4B	YDR012W	HDA1	P53973	706 aa		11.38	□□□□□ -0.59
RPL4B	YDR012W	NUC1	P08466	329 aa		11.37	□□□□□ -0.59
RPL4B	YDR012W	SEC20	P28791	383 aa		11.37	□□□□□ -0.59
RPL4B	YDR012W	GPB2	P39717	880 aa		11.37	□□□□□ -0.59
RPL4B	YDR012W	PTK2	P47116	818 aa	Known RBP	11.37	□□□□□ -0.59
RPL4B	YDR012W	MYO5	Q04439	1219 aa	Known RBP	11.37	□□□□□ -0.59
RPL4B	YDR012W	PKC1	P24583	1151 aa		11.36	□□□□□ -0.59
RPL4B	YDR012W	LSB1	P53281	241 aa		11.36	□□□□□ -0.59
RPL4B	YDR012W	RAD18	P10862	487 aa		11.35	□□□□□ -0.59
RPL4B	YDR012W	EUG1	P32474	517 aa		11.35	□□□□□ -0.59
RPL4B	YDR012W	MAL31	P38156	614 aa		11.35	□□□□□ -0.59
RPL4B	YDR012W	CSM2	P40465	213 aa		11.35	□□□□□ -0.59
RPL4B	YDR012W	ALD6	P54115	500 aa	Known RBP	11.35	□□□□□ -0.59
RPL4B	YDR012W	AIM9	P40053	627 aa	Known RBP	11.34	□□□□□ -0.59
RPL4B	YDR012W	ARP5	P53946	755 aa		11.34	□□□□□ -0.59
RPL4B	YDR012W	PHO88	P38264	188 aa	Predicted RBP	11.33	□□□□□ -0.6
RPL4B	YDR012W	UTP4	Q06679	776 aa	Known RBP	11.33	□□□□□ -0.6
RPL4B	YDR012W	CDC19	P00549	500 aa	Known RBP	11.32	□□□□□ -0.6
RPL4B	YDR012W	RNR2	P09938	399 aa	Known RBP	11.32	□□□□□ -0.6
RPL4B	YDR012W	RNR3	P21672	869 aa	Known RBP	11.32	□□□□□ -0.6
RPL4B	YDR012W	TPM2	P40414	161 aa		11.32	□□□□□ -0.6
RPL4B	YDR012W	VID28	P40547	921 aa		11.32	□□□□□ -0.6
RPL4B	YDR012W	MDM1	Q01846	1127 aa		11.32	□□□□□ -0.6
RPL4B	YDR012W	YOR111W	Q99210	232 aa		11.32	□□□□□ -0.6
RPL4B	YDR012W	TRL1	P09880	827 aa	Known RBP	11.31	□□□□□ -0.6
RPL4B	YDR012W	FBP26	P32604	452 aa		11.31	□□□□□ -0.6
RPL4B	YDR012W	TOM71	P38825	639 aa	Known RBP	11.31	□□□□□ -0.6
RPL4B	YDR012W	PSF2	P40359	213 aa		11.31	□□□□□ -0.6
RPL4B	YDR012W	YKE2	P52553	114 aa		11.31	□□□□□ -0.6
RPL4B	YDR012W	CSC1	Q06538	782 aa		11.31	□□□□□ -0.6
RPL4B	YDR012W	SAM1	P10659	382 aa	Known RBP	11.3	□□□□□ -0.6
RPL4B	YDR012W	SRP54	P20424	541 aa	Known RBP	11.3	□□□□□ -0.6
RPL4B	YDR012W	YGR125W	P53273	1036 aa		11.3	□□□□□ -0.6
RPL4B	YDR012W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.3	□□□□□ -0.6	not detected
RPL4B	YDR012W	RPL8A	P17076	256 aa	Known RBP	11.29	□□□□□ -0.6
RPL4B	YDR012W	PWP2	P25635	923 aa	Known RBP	11.29	□□□□□ -0.6
RPL4B	YDR012W	UTR4	P32626	227 aa		11.29	□□□□□ -0.6
RPL4B	YDR012W	OPY1	P38271	328 aa		11.29	□□□□□ -0.6
RPL4B	YDR012W	AKR1	P39010	764 aa		11.29	□□□□□ -0.6
RPL4B	YDR012W	MXR1	P40029	184 aa		11.29	□□□□□ -0.6
RPL4B	YDR012W	VIP1	Q06685	1146 aa	Known RBP	11.29	□□□□□ -0.6
RPL4B	YDR012W	MET7	Q08645	548 aa		11.29	□□□□□ -0.6
RPL4B	YDR012W	DSE3	Q08729	430 aa		11.29	□□□□□ -0.6
RPL4B	YDR012W	CIT1	P00890	479 aa		11.28	□□□□□ -0.6
RPL4B	YDR012W	MATALPHA2	P0CY08	210 aa		11.28	□□□□□ -0.6
RPL4B	YDR012W	HMLALPHA2	P0CY09	210 aa		11.28	□□□□□ -0.6
RPL4B	YDR012W	SDH2	P21801	266 aa		11.28	□□□□□ -0.6
RPL4B	YDR012W	SRP40	P32583	406 aa	Predicted RBP	11.28	□□□□□ -0.6
RPL4B	YDR012W	TGL1	P34163	548 aa		11.28	□□□□□ -0.6
RPL4B	YDR012W	UBP10	P53874	792 aa	Predicted RBP	11.28	□□□□□ -0.6
RPL4B	YDR012W	ECM23	Q02710	187 aa		11.28	□□□□□ -0.6
RPL4B	YDR012W	SPH1	Q06160	661 aa		11.28	□□□□□ -0.6
RPL4B	YDR012W	SUE1	Q06524	206 aa		11.28	□□□□□ -0.6
RPL4B	YDR012W	PAH1	P32567	862 aa		11.27	□□□□□ -0.61
RPL4B	YDR012W	YDR341C	Q05506	607 aa	Known RBP	11.27	□□□□□ -0.61
RPL4B	YDR012W	DUS4	Q06063	367 aa		11.27	□□□□□ -0.61
RPL4B	YDR012W	ICL2	Q12031	575 aa		11.27	□□□□□ -0.61
RPL4B	YDR012W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	11.26	□□□□□ -0.61	not detected
RPL4B	YDR012W	RGT1	P32862	1170 aa		11.26	□□□□□ -0.61
RPL4B	YDR012W	BMH2	P34730	273 aa	Known RBP	11.26	□□□□□ -0.61
RPL4B	YDR012W	FMS1	P50264	508 aa		11.26	□□□□□ -0.61
RPL4B	YDR012W	TMA64	Q04600	565 aa	Known RBP	11.26	□□□□□ -0.61
RPL4B	YDR012W	EPL1	P43572	832 aa		11.25	□□□□□ -0.61
RPL4B	YDR012W	ULP1	Q02724	621 aa		11.25	□□□□□ -0.61
RPL4B	YDR012W	GDE1	Q02979	1223 aa		11.25	□□□□□ -0.61
RPL4B	YDR012W	BUL2	Q03758	920 aa	Known RBP	11.25	□□□□□ -0.61
RPL4B	YDR012W	GUD1	Q07729	489 aa		11.25	□□□□□ -0.61
RPL4B	YDR012W	TSR3	Q12094	313 aa	Known RBP	11.25	□□□□□ -0.61
RPL4B	YDR012W	RKM4	Q12504	494 aa		11.25	□□□□□ -0.61
RPL4B	YDR012W	HCA4	P20448	770 aa	Known RBP	11.24	□□□□□ -0.61
RPL4B	YDR012W	MCR1	P36060	302 aa	Known RBP	11.24	□□□□□ -0.61
RPL4B	YDR012W	LIF1	P53150	421 aa		11.24	□□□□□ -0.61
RPL4B	YDR012W	DUS3	Q06053	668 aa	Known RBP	11.24	□□□□□ -0.61
RPL4B	YDR012W	PSK2	Q08217	1101 aa		11.24	□□□□□ -0.61
RPL4B	YDR012W	TY1B-A	O13527	1196 aa	Known RBP	11.23	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 39.9 ms