RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 AKAP12Q02952 1782 aa22.55■■□□□ 1.2
PDLIM3-213ENST00000629667 BCL11BQ9C0K0 894 aaPredicted RBP22.54■■□□□ 1.2
PDLIM3-213ENST00000629667 WDR17Q8IZU2 1322 aa22.54■■□□□ 1.2
PDLIM3-213ENST00000629667 RGPD5Q99666 1765 aa22.53■■□□□ 1.2
PDLIM3-213ENST00000629667 NINLQ9Y2I6 1382 aa22.53■■□□□ 1.2
PDLIM3-213ENST00000629667 EVC2Q86UK5 1308 aa22.53■■□□□ 1.2
PDLIM3-213ENST00000629667 CDCA7Q9BWT1 371 aaPredicted RBP22.52■■□□□ 1.2
PDLIM3-213ENST00000629667 AXIN2Q9Y2T1 843 aa22.52■■□□□ 1.2
PDLIM3-213ENST00000629667 TRPM1Q7Z4N2 1603 aa22.5■■□□□ 1.19
PDLIM3-213ENST00000629667 CPSF1Q10570 1443 aaKnown RBP22.5■■□□□ 1.19
PDLIM3-213ENST00000629667 KCNH5Q8NCM2 988 aa22.5■■□□□ 1.19
PDLIM3-213ENST00000629667 CASZ1Q86V15 1759 aa22.49■■□□□ 1.19
PDLIM3-213ENST00000629667 CSB-PGBD3P0DP91 1061 aa22.49■■□□□ 1.19
PDLIM3-213ENST00000629667 PTF1AQ7RTS3 328 aa22.49■■□□□ 1.19
PDLIM3-213ENST00000629667 MARCH10Q8NA82 808 aaPredicted RBP22.49■■□□□ 1.19
PDLIM3-213ENST00000629667 ZNF692Q9BU19 519 aaPredicted RBP22.49■■□□□ 1.19
PDLIM3-213ENST00000629667 ANO8Q9HCE9 1232 aaPredicted RBP22.49■■□□□ 1.19
PDLIM3-213ENST00000629667 SOX12O15370 315 aa22.48■■□□□ 1.19
PDLIM3-213ENST00000629667 ARHGEF25Q86VW2 580 aa22.48■■□□□ 1.19
PDLIM3-213ENST00000629667 L3MBTL2Q969R5 705 aa22.47■■□□□ 1.19
PDLIM3-213ENST00000629667 TTC21BQ7Z4L5 1316 aa22.47■■□□□ 1.19
PDLIM3-213ENST00000629667 BCL9O00512 1426 aa22.47■■□□□ 1.19
PDLIM3-213ENST00000629667 CARD10Q9BWT7 1032 aa22.46■■□□□ 1.19
PDLIM3-213ENST00000629667 PROM2Q8N271 834 aa22.45■■□□□ 1.18
PDLIM3-213ENST00000629667 EXOC5O00471 708 aa22.44■■□□□ 1.18
PDLIM3-213ENST00000629667 TTC21AQ8NDW8 1320 aa22.44■■□□□ 1.18
PDLIM3-213ENST00000629667 ZBTB7AO95365 584 aa22.43■■□□□ 1.18
PDLIM3-213ENST00000629667 PDGFDQ9GZP0 370 aaPredicted RBP22.43■■□□□ 1.18
PDLIM3-213ENST00000629667 STK32BQ9NY57 414 aa22.42■■□□□ 1.18
PDLIM3-213ENST00000629667 ROCK2O75116 1388 aaKnown RBP22.41■■□□□ 1.18
PDLIM3-213ENST00000629667 CCDC7Q96M83 1385 aa22.41■■□□□ 1.18
PDLIM3-213ENST00000629667 TXNRD1Q16881 649 aa22.41■■□□□ 1.18
PDLIM3-213ENST00000629667 KTN1Q86UP2 1357 aaKnown RBP22.4■■□□□ 1.18
PDLIM3-213ENST00000629667 MYOM1P52179 1685 aa22.4■■□□□ 1.18
PDLIM3-213ENST00000629667 NFAT5O94916 1531 aa22.4■■□□□ 1.18
PDLIM3-213ENST00000629667 ATF5Q9Y2D1 282 aaPredicted RBP22.39■■□□□ 1.17
PDLIM3-213ENST00000629667 ABCC6O95255 1503 aa22.38■■□□□ 1.17
PDLIM3-213ENST00000629667 MON2Q7Z3U7 1717 aa22.38■■□□□ 1.17
PDLIM3-213ENST00000629667 SLC15A2Q16348 729 aa22.38■■□□□ 1.17
PDLIM3-213ENST00000629667 TNS2Q63HR2 1409 aa22.38■■□□□ 1.17
PDLIM3-213ENST00000629667 PTGER2P43116 358 aa22.37■■□□□ 1.17
PDLIM3-213ENST00000629667 SIN3AQ96ST3 1273 aa22.36■■□□□ 1.17
PDLIM3-213ENST00000629667 NHSQ6T4R5 1651 aa22.36■■□□□ 1.17
PDLIM3-213ENST00000629667 NEUROD1Q13562 356 aa22.34■■□□□ 1.17
PDLIM3-213ENST00000629667 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.34■■□□□ 1.17
PDLIM3-213ENST00000629667 LTN1O94822 1766 aa22.34■■□□□ 1.17
PDLIM3-213ENST00000629667 KAT6BQ8WYB5 2073 aa22.34■■□□□ 1.17
PDLIM3-213ENST00000629667 ACSBG1Q96GR2 724 aa22.33■■□□□ 1.17
PDLIM3-213ENST00000629667 MTFR1LQ9H019 292 aa22.33■■□□□ 1.17
PDLIM3-213ENST00000629667 NLRP2Q9NX02 1062 aa22.32■■□□□ 1.16
PDLIM3-213ENST00000629667 ERBB3P21860 1342 aa22.31■■□□□ 1.16
PDLIM3-213ENST00000629667 USP54Q70EL1 1684 aa22.31■■□□□ 1.16
PDLIM3-213ENST00000629667 SYT17Q9BSW7 474 aa22.31■■□□□ 1.16
PDLIM3-213ENST00000629667 FHDC1Q9C0D6 1143 aaPredicted RBP22.31■■□□□ 1.16
PDLIM3-213ENST00000629667 UTRNP46939 3433 aa22.3■■□□□ 1.16
PDLIM3-213ENST00000629667 USP31Q70CQ4 1352 aa22.3■■□□□ 1.16
PDLIM3-213ENST00000629667 IL2RBP14784 551 aa22.3■■□□□ 1.16
PDLIM3-213ENST00000629667 BTAF1O14981 1849 aa22.29■■□□□ 1.16
PDLIM3-213ENST00000629667 NME9Q86XW9 330 aa22.28■■□□□ 1.16
PDLIM3-213ENST00000629667 CHD4Q14839 1912 aa22.27■■□□□ 1.16
PDLIM3-213ENST00000629667 TMC1Q8TDI8 760 aa22.27■■□□□ 1.16
PDLIM3-213ENST00000629667 SBNO2Q9Y2G9 1366 aa22.26■■□□□ 1.15
PDLIM3-213ENST00000629667 HDGFL2Q7Z4V5 671 aaPredicted RBP22.26■■□□□ 1.15
PDLIM3-213ENST00000629667 ANKRD24Q8TF21 1146 aa22.26■■□□□ 1.15
PDLIM3-213ENST00000629667 PAPPAQ13219 1627 aa22.25■■□□□ 1.15
PDLIM3-213ENST00000629667 SGIP1Q9BQI5 828 aa22.25■■□□□ 1.15
PDLIM3-213ENST00000629667 CD163L1Q9NR16 1453 aa22.25■■□□□ 1.15
PDLIM3-213ENST00000629667 ZNF784Q8NCA9 323 aaPredicted RBP22.24■■□□□ 1.15
PDLIM3-213ENST00000629667 ARXQ96QS3 562 aa22.24■■□□□ 1.15
PDLIM3-213ENST00000629667 CARD11Q9BXL7 1154 aa22.22■■□□□ 1.15
PDLIM3-213ENST00000629667 SLC12A5Q9H2X9 1139 aa22.21■■□□□ 1.15
PDLIM3-213ENST00000629667 EDC4Q6P2E9 1401 aaKnown RBP22.21■■□□□ 1.15
PDLIM3-213ENST00000629667 ZNF827Q17R98 1081 aa22.2■■□□□ 1.14
PDLIM3-213ENST00000629667 TERF2IPQ9NYB0 399 aa22.2■■□□□ 1.14
PDLIM3-213ENST00000629667 LRRC4BQ9NT99 713 aa22.19■■□□□ 1.14
PDLIM3-213ENST00000629667 FAM208AQ9UK61 1670 aaKnown RBP22.19■■□□□ 1.14
PDLIM3-213ENST00000629667 DDX54Q8TDD1 881 aaKnown RBP22.18■■□□□ 1.14
PDLIM3-213ENST00000629667 MAP3K5Q99683 1374 aa22.17■■□□□ 1.14
PDLIM3-213ENST00000629667 QSER1Q2KHR3 1735 aa22.17■■□□□ 1.14
PDLIM3-213ENST00000629667 A0A1W2PP64 1363 aa22.16■■□□□ 1.14
PDLIM3-213ENST00000629667 SLC27A3Q5K4L6 730 aa22.16■■□□□ 1.14
PDLIM3-213ENST00000629667 IP6K1Q92551 441 aa22.16■■□□□ 1.14
PDLIM3-213ENST00000629667 LTV1Q96GA3 475 aaPredicted RBP22.16■■□□□ 1.14
PDLIM3-213ENST00000629667 SLC16A10Q8TF71 515 aa22.14■■□□□ 1.13
PDLIM3-213ENST00000629667 AKT1S1Q96B36 256 aa22.14■■□□□ 1.13
PDLIM3-213ENST00000629667 POLD1P28340 1107 aa22.13■■□□□ 1.13
PDLIM3-213ENST00000629667 GPR162Q16538 588 aa22.13■■□□□ 1.13
PDLIM3-213ENST00000629667 KLHL34Q8N239 644 aa22.13■■□□□ 1.13
PDLIM3-213ENST00000629667 SYTL4Q96C24 671 aaPredicted RBP22.13■■□□□ 1.13
PDLIM3-213ENST00000629667 PUS7Q96PZ0 661 aaKnown RBP22.12■■□□□ 1.13
PDLIM3-213ENST00000629667 DOT1LQ8TEK3 1739 aa22.11■■□□□ 1.13
PDLIM3-213ENST00000629667 TUBGCP6Q96RT7 1819 aa22.1■■□□□ 1.13
PDLIM3-213ENST00000629667 RGPD2P0DJD1 1756 aa22.1■■□□□ 1.13
PDLIM3-213ENST00000629667 COL24A1Q17RW2 1714 aa22.1■■□□□ 1.13
PDLIM3-213ENST00000629667 TFCP2L1Q9NZI6 479 aa22.1■■□□□ 1.13
PDLIM3-213ENST00000629667 PNPLA7Q6ZV29 1317 aa22.09■■□□□ 1.13
PDLIM3-213ENST00000629667 LY75O60449 1722 aa22.09■■□□□ 1.13
PDLIM3-213ENST00000629667 PRIM1P49642 420 aaKnown RBP22.09■■□□□ 1.13
PDLIM3-213ENST00000629667 COG3Q96JB2 828 aa22.09■■□□□ 1.13
PDLIM3-213ENST00000629667 ANKRD36BQ8N2N9 1353 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms