RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ZNF330Q9Y3S2 320 aaPredicted RBP19.98■□□□□ 0.79
CPSF1-213ENST00000620219 GAS2L2Q8NHY3 880 aa19.98■□□□□ 0.79
CPSF1-213ENST00000620219 TNNQ9UQP3 1299 aa19.98■□□□□ 0.79
CPSF1-213ENST00000620219 LRRC59Q96AG4 307 aaKnown RBP19.97■□□□□ 0.79
CPSF1-213ENST00000620219 ZNF530Q6P9A1 599 aaPredicted RBP19.96■□□□□ 0.79
CPSF1-213ENST00000620219 NOB1Q9ULX3 412 aaKnown RBP19.96■□□□□ 0.79
CPSF1-213ENST00000620219 IL13P35225 146 aa19.96■□□□□ 0.79
CPSF1-213ENST00000620219 MSH6P52701 1360 aa19.95■□□□□ 0.78
CPSF1-213ENST00000620219 RARSP54136 660 aaKnown RBP19.95■□□□□ 0.78
CPSF1-213ENST00000620219 NKTRP30414 1462 aaKnown RBP19.95■□□□□ 0.78
CPSF1-213ENST00000620219 RSPH6AQ9H0K4 717 aa19.95■□□□□ 0.78
CPSF1-213ENST00000620219 REREQ9P2R6 1566 aa19.95■□□□□ 0.78
CPSF1-213ENST00000620219 RIMS1Q86UR5 1692 aaKnown RBP19.95■□□□□ 0.78
CPSF1-213ENST00000620219 NEURL4Q96JN8 1562 aa19.94■□□□□ 0.78
CPSF1-213ENST00000620219 IFT172Q9UG01 1749 aa19.94■□□□□ 0.78
CPSF1-213ENST00000620219 SSH1Q8WYL5 1049 aa19.94■□□□□ 0.78
CPSF1-213ENST00000620219 GCP02774 474 aa19.94■□□□□ 0.78
CPSF1-213ENST00000620219 EYA1Q99502 592 aa19.94■□□□□ 0.78
CPSF1-213ENST00000620219 AEBP2Q6ZN18 517 aaPredicted RBP19.94■□□□□ 0.78
CPSF1-213ENST00000620219 PTPRUQ92729 1446 aa19.93■□□□□ 0.78
CPSF1-213ENST00000620219 TMEM94Q12767 1356 aa19.93■□□□□ 0.78
CPSF1-213ENST00000620219 RNF123Q5XPI4 1314 aa19.92■□□□□ 0.78
CPSF1-213ENST00000620219 MYOM1P52179 1685 aa19.92■□□□□ 0.78
CPSF1-213ENST00000620219 RWDD1Q9H446 243 aaPredicted RBP19.92■□□□□ 0.78
CPSF1-213ENST00000620219 TOM1L2Q6ZVM7 507 aa19.91■□□□□ 0.78
CPSF1-213ENST00000620219 ARHGEF28Q8N1W1 1705 aaKnown RBP19.91■□□□□ 0.78
CPSF1-213ENST00000620219 NUTM2BA6NNL0 878 aaPredicted RBP19.9■□□□□ 0.78
CPSF1-213ENST00000620219 NUTM2EB1AL46 878 aaPredicted RBP19.9■□□□□ 0.78
CPSF1-213ENST00000620219 PLEKHO1Q53GL0 409 aaPredicted RBP19.9■□□□□ 0.78
CPSF1-213ENST00000620219 NUTM2AQ8IVF1 878 aaPredicted RBP19.9■□□□□ 0.78
CPSF1-213ENST00000620219 ZNF521Q96K83 1311 aa19.9■□□□□ 0.78
CPSF1-213ENST00000620219 HOXC9P31274 260 aa19.9■□□□□ 0.78
CPSF1-213ENST00000620219 ZNF428Q96B54 188 aa19.9■□□□□ 0.78
CPSF1-213ENST00000620219 FER1L4A9Z1Z3 1794 aa19.9■□□□□ 0.78
CPSF1-213ENST00000620219 MPRIPQ6WCQ1 1025 aa19.89■□□□□ 0.77
CPSF1-213ENST00000620219 ATP7BP35670 1465 aa19.89■□□□□ 0.77
CPSF1-213ENST00000620219 ANKRD24Q8TF21 1146 aa19.89■□□□□ 0.77
CPSF1-213ENST00000620219 TRIM35Q9UPQ4 493 aa19.89■□□□□ 0.77
CPSF1-213ENST00000620219 FLT4P35916 1363 aa19.89■□□□□ 0.77
CPSF1-213ENST00000620219 FKBP5Q13451 457 aaPredicted RBP19.88■□□□□ 0.77
CPSF1-213ENST00000620219 MBIPQ9NS73 344 aa19.88■□□□□ 0.77
CPSF1-213ENST00000620219 USP6P35125 1406 aa19.88■□□□□ 0.77
CPSF1-213ENST00000620219 KRT24Q2M2I5 525 aa19.88■□□□□ 0.77
CPSF1-213ENST00000620219 KIF16BQ96L93 1317 aa19.88■□□□□ 0.77
CPSF1-213ENST00000620219 MTHFSDQ2M296 383 aaKnown RBP19.88■□□□□ 0.77
CPSF1-213ENST00000620219 GNAT3A8MTJ3 354 aa19.88■□□□□ 0.77
CPSF1-213ENST00000620219 C1orf115Q9H7X2 142 aa19.88■□□□□ 0.77
CPSF1-213ENST00000620219 NPHP3Q7Z494 1330 aa19.87■□□□□ 0.77
CPSF1-213ENST00000620219 ZNF335Q9H4Z2 1342 aaPredicted RBP19.87■□□□□ 0.77
CPSF1-213ENST00000620219 SLC4A2P04920 1241 aa19.87■□□□□ 0.77
CPSF1-213ENST00000620219 DDX54Q8TDD1 881 aaKnown RBP19.86■□□□□ 0.77
CPSF1-213ENST00000620219 UPF2Q9HAU5 1272 aaKnown RBP19.86■□□□□ 0.77
CPSF1-213ENST00000620219 CENPQQ7L2Z9 268 aaPredicted RBP19.86■□□□□ 0.77
CPSF1-213ENST00000620219 SYTL4Q96C24 671 aaPredicted RBP19.86■□□□□ 0.77
CPSF1-213ENST00000620219 CHMP4BQ9H444 224 aaKnown RBP19.86■□□□□ 0.77
CPSF1-213ENST00000620219 DDX19BQ9UMR2 479 aa19.86■□□□□ 0.77
CPSF1-213ENST00000620219 TATP17735 454 aaPredicted RBP19.85■□□□□ 0.77
CPSF1-213ENST00000620219 PDE4AP27815 886 aa19.85■□□□□ 0.77
CPSF1-213ENST00000620219 PDE3AQ14432 1141 aa19.85■□□□□ 0.77
CPSF1-213ENST00000620219 ATF7IPQ6VMQ6 1270 aa19.85■□□□□ 0.77
CPSF1-213ENST00000620219 TSPYL6Q8N831 410 aa19.85■□□□□ 0.77
CPSF1-213ENST00000620219 RLBP1P12271 317 aa19.84■□□□□ 0.77
CPSF1-213ENST00000620219 NBR1Q14596 966 aa19.84■□□□□ 0.77
CPSF1-213ENST00000620219 CCDC27Q2M243 656 aa19.84■□□□□ 0.77
CPSF1-213ENST00000620219 IFT57Q9NWB7 429 aa19.84■□□□□ 0.77
CPSF1-213ENST00000620219 ADAMTS2O95450 1211 aa19.83■□□□□ 0.76
CPSF1-213ENST00000620219 CFAP44Q96MT7 982 aa19.83■□□□□ 0.76
CPSF1-213ENST00000620219 PIK3R4Q99570 1358 aa19.83■□□□□ 0.76
CPSF1-213ENST00000620219 CEP170BQ9Y4F5 1589 aaPredicted RBP19.82■□□□□ 0.76
CPSF1-213ENST00000620219 AIMP1Q12904 312 aaKnown RBP19.82■□□□□ 0.76
CPSF1-213ENST00000620219 TTC5Q8N0Z6 440 aa19.82■□□□□ 0.76
CPSF1-213ENST00000620219 C8orf58Q8NAV2 365 aa19.82■□□□□ 0.76
CPSF1-213ENST00000620219 PLEKHF1Q96S99 279 aa19.82■□□□□ 0.76
CPSF1-213ENST00000620219 API5Q9BZZ5 524 aaKnown RBP19.82■□□□□ 0.76
CPSF1-213ENST00000620219 TMEM57Q8N5G2 664 aa19.81■□□□□ 0.76
CPSF1-213ENST00000620219 SLAIN2Q9P270 581 aa19.81■□□□□ 0.76
CPSF1-213ENST00000620219 SETD1BQ9UPS6 1966 aaKnown RBP19.8■□□□□ 0.76
CPSF1-213ENST00000620219 IP6K1Q92551 441 aa19.8■□□□□ 0.76
CPSF1-213ENST00000620219 HDGFL1Q5TGJ6 251 aa19.8■□□□□ 0.76
CPSF1-213ENST00000620219 TRIM27P14373 513 aa19.8■□□□□ 0.76
CPSF1-213ENST00000620219 OS9Q13438 667 aaPredicted RBP19.8■□□□□ 0.76
CPSF1-213ENST00000620219 MYO3AQ8NEV4 1616 aa19.8■□□□□ 0.76
CPSF1-213ENST00000620219 SBNO1A3KN83 1393 aa19.79■□□□□ 0.76
CPSF1-213ENST00000620219 NBPF6Q5VWK0 638 aa19.79■□□□□ 0.76
CPSF1-213ENST00000620219 NBPF4Q96M43 638 aa19.79■□□□□ 0.76
CPSF1-213ENST00000620219 INSRP06213 1382 aa19.79■□□□□ 0.76
CPSF1-213ENST00000620219 DLC1Q96QB1 1528 aa19.78■□□□□ 0.76
CPSF1-213ENST00000620219 BTBD11A6QL63 1104 aa19.78■□□□□ 0.76
CPSF1-213ENST00000620219 MVPQ14764 893 aaKnown RBP19.78■□□□□ 0.76
CPSF1-213ENST00000620219 ANKRD45Q5TZF3 282 aa19.78■□□□□ 0.76
CPSF1-213ENST00000620219 CPSF1Q10570 1443 aaKnown RBP19.77■□□□□ 0.76
CPSF1-213ENST00000620219 C3P01024 1663 aa19.77■□□□□ 0.76
CPSF1-213ENST00000620219 IGHDP01880 384 aa19.77■□□□□ 0.76
CPSF1-213ENST00000620219 TRMT2AQ8IZ69 625 aaKnown RBP19.77■□□□□ 0.76
CPSF1-213ENST00000620219 CT47B1P0C2W7 299 aaPredicted RBP19.77■□□□□ 0.76
CPSF1-213ENST00000620219 CD163L1Q9NR16 1453 aa19.77■□□□□ 0.75
CPSF1-213ENST00000620219 CPS1P31327 1500 aa19.76■□□□□ 0.75
CPSF1-213ENST00000620219 TAF7Q15545 349 aaPredicted RBP19.76■□□□□ 0.75
CPSF1-213ENST00000620219 KAT6BQ8WYB5 2073 aa19.75■□□□□ 0.75
CPSF1-213ENST00000620219 F6X3S4 739 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms