RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 NWD1Q149M9 1564 aa18.85■□□□□ 0.61
CDH1-213ENST00000612417 CT47B1P0C2W7 299 aaPredicted RBP18.85■□□□□ 0.61
CDH1-213ENST00000612417 RGS3P49796 1198 aa18.85■□□□□ 0.61
CDH1-213ENST00000612417 PHF8Q9UPP1 1060 aa18.85■□□□□ 0.61
CDH1-213ENST00000612417 AATKQ6ZMQ8 1374 aa18.84■□□□□ 0.61
CDH1-213ENST00000612417 PNPLA6Q8IY17 1366 aa18.84■□□□□ 0.61
CDH1-213ENST00000612417 ESCO1Q5FWF5 840 aa18.83■□□□□ 0.61
CDH1-213ENST00000612417 SOX12O15370 315 aa18.83■□□□□ 0.6
CDH1-213ENST00000612417 SSH2Q76I76 1423 aa18.82■□□□□ 0.6
CDH1-213ENST00000612417 PLEKHF1Q96S99 279 aa18.82■□□□□ 0.6
CDH1-213ENST00000612417 FRAT1Q92837 279 aaPredicted RBP18.81■□□□□ 0.6
CDH1-213ENST00000612417 OVOS2A0A0J9YW53 1432 aa18.8■□□□□ 0.6
CDH1-213ENST00000612417 OVOS2Q6IE36 1432 aa18.8■□□□□ 0.6
CDH1-213ENST00000612417 LAS1LQ9Y4W2 734 aaKnown RBP18.8■□□□□ 0.6
CDH1-213ENST00000612417 RLBP1P12271 317 aa18.79■□□□□ 0.6
CDH1-213ENST00000612417 PNNQ9H307 717 aaKnown RBP18.79■□□□□ 0.6
CDH1-213ENST00000612417 CDK12Q9NYV4 1490 aaPredicted RBP18.79■□□□□ 0.6
CDH1-213ENST00000612417 NEFMP07197 916 aa18.78■□□□□ 0.6
CDH1-213ENST00000612417 NLRP6P59044 892 aa18.78■□□□□ 0.6
CDH1-213ENST00000612417 NUTM2GQ5VZR2 741 aa18.78■□□□□ 0.6
CDH1-213ENST00000612417 IL16Q14005 1332 aa18.78■□□□□ 0.6
CDH1-213ENST00000612417 PSME1Q06323 249 aa18.78■□□□□ 0.6
CDH1-213ENST00000612417 ABTB2Q8N961 1025 aa18.78■□□□□ 0.6
CDH1-213ENST00000612417 LMTK3Q96Q04 1460 aa18.78■□□□□ 0.6
CDH1-213ENST00000612417 C19orf44Q9H6X5 657 aa18.77■□□□□ 0.6
CDH1-213ENST00000612417 TMPOP42166 694 aaKnown RBP18.77■□□□□ 0.59
CDH1-213ENST00000612417 STRCP1A6NGW2 1772 aa18.76■□□□□ 0.59
CDH1-213ENST00000612417 USP31Q70CQ4 1352 aa18.76■□□□□ 0.59
CDH1-213ENST00000612417 PIK3C2AO00443 1686 aa18.76■□□□□ 0.59
CDH1-213ENST00000612417 FCHSD2O94868 740 aa18.75■□□□□ 0.59
CDH1-213ENST00000612417 IL13P35225 146 aa18.75■□□□□ 0.59
CDH1-213ENST00000612417 ORAI2Q96SN7 254 aa18.75■□□□□ 0.59
CDH1-213ENST00000612417 PCDHB15Q9Y5E8 787 aa18.75■□□□□ 0.59
CDH1-213ENST00000612417 HMOX1P09601 288 aa18.75■□□□□ 0.59
CDH1-213ENST00000612417 ATF3P18847 181 aa18.75■□□□□ 0.59
CDH1-213ENST00000612417 TRIM35Q9UPQ4 493 aa18.75■□□□□ 0.59
CDH1-213ENST00000612417 TMEM94Q12767 1356 aa18.75■□□□□ 0.59
CDH1-213ENST00000612417 MVPQ14764 893 aaKnown RBP18.74■□□□□ 0.59
CDH1-213ENST00000612417 ZKSCAN2Q63HK3 967 aa18.73■□□□□ 0.59
CDH1-213ENST00000612417 BCL2L13Q9BXK5 485 aa18.73■□□□□ 0.59
CDH1-213ENST00000612417 DAXXQ9UER7 740 aaPredicted RBP18.73■□□□□ 0.59
CDH1-213ENST00000612417 TNNQ9UQP3 1299 aa18.73■□□□□ 0.59
CDH1-213ENST00000612417 STRCQ7RTU9 1775 aa18.73■□□□□ 0.59
CDH1-213ENST00000612417 USP19O94966 1318 aa18.73■□□□□ 0.59
CDH1-213ENST00000612417 FOXO3O43524 673 aa18.72■□□□□ 0.59
CDH1-213ENST00000612417 PRKAR2BP31323 418 aa18.72■□□□□ 0.59
CDH1-213ENST00000612417 RSPH6AQ9H0K4 717 aa18.72■□□□□ 0.59
CDH1-213ENST00000612417 RWDD1Q9H446 243 aaPredicted RBP18.71■□□□□ 0.59
CDH1-213ENST00000612417 LRRC7Q96NW7 1537 aa18.71■□□□□ 0.59
CDH1-213ENST00000612417 AMPHP49418 695 aa18.7■□□□□ 0.58
CDH1-213ENST00000612417 XPCQ01831 940 aaPredicted RBP18.7■□□□□ 0.58
CDH1-213ENST00000612417 HSP90AB2PQ58FF8 381 aa18.7■□□□□ 0.58
CDH1-213ENST00000612417 DZIP1LQ8IYY4 767 aaKnown RBP18.7■□□□□ 0.58
CDH1-213ENST00000612417 MAP3K19Q56UN5 1328 aa18.7■□□□□ 0.58
CDH1-213ENST00000612417 TSR2Q969E8 191 aaKnown RBP18.7■□□□□ 0.58
CDH1-213ENST00000612417 RIPK4P57078 832 aa18.69■□□□□ 0.58
CDH1-213ENST00000612417 EIF4A2Q14240 407 aaKnown RBP18.69■□□□□ 0.58
CDH1-213ENST00000612417 PEAK1Q9H792 1746 aa18.69■□□□□ 0.58
CDH1-213ENST00000612417 EXOSC9Q06265 439 aaKnown RBP18.69■□□□□ 0.58
CDH1-213ENST00000612417 C1orf167Q5SNV9 1468 aa18.69■□□□□ 0.58
CDH1-213ENST00000612417 SLC4A3P48751 1232 aa18.68■□□□□ 0.58
CDH1-213ENST00000612417 FTSJ3Q8IY81 847 aaKnown RBP18.68■□□□□ 0.58
CDH1-213ENST00000612417 LMOD2Q6P5Q4 547 aa18.67■□□□□ 0.58
CDH1-213ENST00000612417 SMC4Q9NTJ3 1288 aa18.67■□□□□ 0.58
CDH1-213ENST00000612417 PDZRN3Q9UPQ7 1066 aa18.67■□□□□ 0.58
CDH1-213ENST00000612417 NCOA3Q9Y6Q9 1424 aa18.67■□□□□ 0.58
CDH1-213ENST00000612417 MARF1Q9Y4F3 1742 aaKnown RBP18.66■□□□□ 0.58
CDH1-213ENST00000612417 NFKBIBQ15653 356 aa18.66■□□□□ 0.58
CDH1-213ENST00000612417 UBE2Q2Q8WVN8 375 aa18.66■□□□□ 0.58
CDH1-213ENST00000612417 SSH1Q8WYL5 1049 aa18.66■□□□□ 0.58
CDH1-213ENST00000612417 SBNO1A3KN83 1393 aa18.66■□□□□ 0.58
CDH1-213ENST00000612417 FLT4P35916 1363 aa18.66■□□□□ 0.58
CDH1-213ENST00000612417 PLEKHG5O94827 1062 aa18.65■□□□□ 0.58
CDH1-213ENST00000612417 TRIM27P14373 513 aa18.65■□□□□ 0.58
CDH1-213ENST00000612417 KRT28Q7Z3Y7 464 aa18.65■□□□□ 0.58
CDH1-213ENST00000612417 CADPS2Q86UW7 1296 aa18.65■□□□□ 0.58
CDH1-213ENST00000612417 PHACTR3Q96KR7 559 aa18.65■□□□□ 0.58
CDH1-213ENST00000612417 MSH6P52701 1360 aa18.65■□□□□ 0.58
CDH1-213ENST00000612417 SULT6B1Q6IMI4 303 aa18.65■□□□□ 0.58
CDH1-213ENST00000612417 ATF7IPQ6VMQ6 1270 aa18.65■□□□□ 0.58
CDH1-213ENST00000612417 DDX19BQ9UMR2 479 aa18.64■□□□□ 0.57
CDH1-213ENST00000612417 USP54Q70EL1 1684 aa18.64■□□□□ 0.57
CDH1-213ENST00000612417 KIF16BQ96L93 1317 aa18.64■□□□□ 0.57
CDH1-213ENST00000612417 SEC24BO95487 1268 aa18.64■□□□□ 0.57
CDH1-213ENST00000612417 HDAC1Q13547 482 aaPredicted RBP18.64■□□□□ 0.57
CDH1-213ENST00000612417 KIF1AQ12756 1690 aa18.63■□□□□ 0.57
CDH1-213ENST00000612417 DCCP43146 1447 aa18.63■□□□□ 0.57
CDH1-213ENST00000612417 MST1RQ04912 1400 aa18.63■□□□□ 0.57
CDH1-213ENST00000612417 NFE2L2Q16236 605 aa18.63■□□□□ 0.57
CDH1-213ENST00000612417 ZNF335Q9H4Z2 1342 aaPredicted RBP18.63■□□□□ 0.57
CDH1-213ENST00000612417 ALDH1L2Q3SY69 923 aa18.62■□□□□ 0.57
CDH1-213ENST00000612417 AEBP1Q8IUX7 1158 aa18.62■□□□□ 0.57
CDH1-213ENST00000612417 ZBTB7CA1YPR0 619 aa18.62■□□□□ 0.57
CDH1-213ENST00000612417 ZNF428Q96B54 188 aa18.62■□□□□ 0.57
CDH1-213ENST00000612417 HOXC9P31274 260 aa18.61■□□□□ 0.57
CDH1-213ENST00000612417 BRPF1P55201 1214 aaPredicted RBP18.61■□□□□ 0.57
CDH1-213ENST00000612417 XIRP1Q702N8 1843 aaKnown RBP18.6■□□□□ 0.57
CDH1-213ENST00000612417 KCNH5Q8NCM2 988 aa18.6■□□□□ 0.57
CDH1-213ENST00000612417 IPO8O15397 1037 aaKnown RBP18.59■□□□□ 0.57
CDH1-213ENST00000612417 LTV1Q96GA3 475 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms