RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 ERICH6Q7L0X2 663 aa7.32□□□□□ -1.24
CKS1BP3-201ENST00000600888 ZNF592Q92610 1267 aa7.32□□□□□ -1.24
CKS1BP3-201ENST00000600888 KCTD15Q96SI1 283 aaPredicted RBP7.32□□□□□ -1.24
CKS1BP3-201ENST00000600888 WASF2Q9Y6W5 498 aa7.32□□□□□ -1.24
CKS1BP3-201ENST00000600888 POM121CA8CG34 1229 aa7.31□□□□□ -1.24
CKS1BP3-201ENST00000600888 SOX11P35716 441 aa7.31□□□□□ -1.24
CKS1BP3-201ENST00000600888 NR5A1Q13285 461 aa7.31□□□□□ -1.24
CKS1BP3-201ENST00000600888 NBPF20Q3BBV1 942 aa7.31□□□□□ -1.24
CKS1BP3-201ENST00000600888 FAM187AA6NFU0 413 aa7.3□□□□□ -1.24
CKS1BP3-201ENST00000600888 DGAT1O75907 488 aa7.3□□□□□ -1.24
CKS1BP3-201ENST00000600888 SEMA3FQ13275 785 aa7.3□□□□□ -1.24
CKS1BP3-201ENST00000600888 ALG2Q9H553 416 aa7.3□□□□□ -1.24
CKS1BP3-201ENST00000600888 CEP126Q9P2H0 1117 aa7.3□□□□□ -1.24
CKS1BP3-201ENST00000600888 ESPNB1AK53 854 aa7.29□□□□□ -1.24
CKS1BP3-201ENST00000600888 GIGYF1O75420 1035 aaPredicted RBP7.29□□□□□ -1.24
CKS1BP3-201ENST00000600888 FSHRP23945 695 aa7.29□□□□□ -1.24
CKS1BP3-201ENST00000600888 NNTQ13423 1086 aa7.29□□□□□ -1.24
CKS1BP3-201ENST00000600888 HPS1Q92902 700 aa7.29□□□□□ -1.24
CKS1BP3-201ENST00000600888 NR3C2P08235 984 aa7.28□□□□□ -1.24
CKS1BP3-201ENST00000600888 PKDCCQ504Y2 493 aa7.28□□□□□ -1.24
CKS1BP3-201ENST00000600888 INTS6LQ5JSJ4 861 aaKnown RBP7.28□□□□□ -1.24
CKS1BP3-201ENST00000600888 HDGFL1Q5TGJ6 251 aa7.28□□□□□ -1.24
CKS1BP3-201ENST00000600888 ZNF777Q9ULD5 760 aaPredicted RBP7.28□□□□□ -1.24
CKS1BP3-201ENST00000600888 AVPP01185 164 aa7.27□□□□□ -1.25
CKS1BP3-201ENST00000600888 SEPT12Q8IYM1 358 aa7.27□□□□□ -1.25
CKS1BP3-201ENST00000600888 ADAMTS19Q8TE59 1207 aa7.27□□□□□ -1.25
CKS1BP3-201ENST00000600888 TIMELESSQ9UNS1 1208 aa7.27□□□□□ -1.25
CKS1BP3-201ENST00000600888 RAB15P59190 212 aa7.26□□□□□ -1.25
CKS1BP3-201ENST00000600888 RNF20Q5VTR2 975 aa7.26□□□□□ -1.25
CKS1BP3-201ENST00000600888 CCDC116Q8IYX3 515 aa7.26□□□□□ -1.25
CKS1BP3-201ENST00000600888 PHTF2Q8N3S3 785 aa7.26□□□□□ -1.25
CKS1BP3-201ENST00000600888 KLF16Q9BXK1 252 aaPredicted RBP7.26□□□□□ -1.25
CKS1BP3-201ENST00000600888 DHX9Q08211 1270 aaKnown RBP7.25□□□□□ -1.25
CKS1BP3-201ENST00000600888 PPP1R26Q5T8A7 1209 aaPredicted RBP7.25□□□□□ -1.25
CKS1BP3-201ENST00000600888 EMILIN1Q9Y6C2 1016 aa7.25□□□□□ -1.25
CKS1BP3-201ENST00000600888 ERVH48-1M5A8F1 160 aa7.24□□□□□ -1.25
CKS1BP3-201ENST00000600888 WDR4P57081 412 aaKnown RBP7.24□□□□□ -1.25
CKS1BP3-201ENST00000600888 SLFNL1Q499Z3 407 aa7.24□□□□□ -1.25
CKS1BP3-201ENST00000600888 CCDC125Q86Z20 511 aa7.24□□□□□ -1.25
CKS1BP3-201ENST00000600888 GLMNQ92990 594 aa7.24□□□□□ -1.25
CKS1BP3-201ENST00000600888 TIMP2P16035 220 aa7.23□□□□□ -1.25
CKS1BP3-201ENST00000600888 MYT1Q01538 1121 aa7.23□□□□□ -1.25
CKS1BP3-201ENST00000600888 Q6ZNB5 142 aa7.23□□□□□ -1.25
CKS1BP3-201ENST00000600888 ITPKCQ96DU7 683 aa7.23□□□□□ -1.25
CKS1BP3-201ENST00000600888 CALR3Q96L12 384 aaKnown RBP7.23□□□□□ -1.25
CKS1BP3-201ENST00000600888 TMPRSS4Q9NRS4 437 aa7.23□□□□□ -1.25
CKS1BP3-201ENST00000600888 ZIC2O95409 532 aaPredicted RBP7.22□□□□□ -1.25
CKS1BP3-201ENST00000600888 SMCPP49901 116 aaPredicted RBP7.22□□□□□ -1.25
CKS1BP3-201ENST00000600888 CTC1Q2NKJ3 1217 aa7.22□□□□□ -1.25
CKS1BP3-201ENST00000600888 TSGA10IPQ3SY00 556 aa7.22□□□□□ -1.25
CKS1BP3-201ENST00000600888 RNF135Q8IUD6 432 aa7.22□□□□□ -1.25
CKS1BP3-201ENST00000600888 CCDC85AQ96PX6 553 aaPredicted RBP7.22□□□□□ -1.25
CKS1BP3-201ENST00000600888 PGPEP1Q9NXJ5 209 aa7.22□□□□□ -1.25
CKS1BP3-201ENST00000600888 CHIC2Q9UKJ5 165 aa7.22□□□□□ -1.25
CKS1BP3-201ENST00000600888 PIK3CDO00329 1044 aa7.21□□□□□ -1.26
CKS1BP3-201ENST00000600888 AXIN1O15169 862 aa7.21□□□□□ -1.26
CKS1BP3-201ENST00000600888 CAPN5O15484 640 aaPredicted RBP7.21□□□□□ -1.26
CKS1BP3-201ENST00000600888 CRIPAKQ8N1N5 446 aa7.21□□□□□ -1.26
CKS1BP3-201ENST00000600888 ZFAND3Q9H8U3 227 aa7.21□□□□□ -1.26
CKS1BP3-201ENST00000600888 AAASQ9NRG9 546 aa7.21□□□□□ -1.26
CKS1BP3-201ENST00000600888 PCDHB11Q9Y5F2 797 aa7.21□□□□□ -1.26
CKS1BP3-201ENST00000600888 ABCC9O60706 1549 aa7.21□□□□□ -1.26
CKS1BP3-201ENST00000600888 TRAF7Q6Q0C0 670 aa7.2□□□□□ -1.26
CKS1BP3-201ENST00000600888 ZNF784Q8NCA9 323 aaPredicted RBP7.2□□□□□ -1.26
CKS1BP3-201ENST00000600888 TRIM52Q96A61 297 aa7.2□□□□□ -1.26
CKS1BP3-201ENST00000600888 UCN2Q96RP3 112 aa7.2□□□□□ -1.26
CKS1BP3-201ENST00000600888 ST8SIA5O15466 376 aa7.19□□□□□ -1.26
CKS1BP3-201ENST00000600888 LILRA1O75019 489 aa7.19□□□□□ -1.26
CKS1BP3-201ENST00000600888 SKIP12755 728 aa7.19□□□□□ -1.26
CKS1BP3-201ENST00000600888 MAP7D1Q3KQU3 841 aa7.19□□□□□ -1.26
CKS1BP3-201ENST00000600888 PLPP7Q8NBV4 271 aa7.19□□□□□ -1.26
CKS1BP3-201ENST00000600888 NFATC2IPQ8NCF5 419 aa7.19□□□□□ -1.26
CKS1BP3-201ENST00000600888 CDCA7Q9BWT1 371 aaPredicted RBP7.19□□□□□ -1.26
CKS1BP3-201ENST00000600888 DOLKQ9UPQ8 538 aa7.19□□□□□ -1.26
CKS1BP3-201ENST00000600888 ARID3CA6NKF2 412 aa7.18□□□□□ -1.26
CKS1BP3-201ENST00000600888 LCE2BO14633 110 aa7.18□□□□□ -1.26
CKS1BP3-201ENST00000600888 ADD1P35611 737 aaKnown RBP7.18□□□□□ -1.26
CKS1BP3-201ENST00000600888 CBLBQ13191 982 aa7.18□□□□□ -1.26
CKS1BP3-201ENST00000600888 TBC1D9Q6ZT07 1266 aa7.18□□□□□ -1.26
CKS1BP3-201ENST00000600888 CYLDQ9NQC7 956 aa7.18□□□□□ -1.26
CKS1BP3-201ENST00000600888 SCTRP47872 440 aa7.17□□□□□ -1.26
CKS1BP3-201ENST00000600888 ERVK-9P63128 1117 aa7.17□□□□□ -1.26
CKS1BP3-201ENST00000600888 CC2D2BQ6DHV5 1058 aa7.17□□□□□ -1.26
CKS1BP3-201ENST00000600888 Q6ZVU0 165 aa7.17□□□□□ -1.26
CKS1BP3-201ENST00000600888 TFIP11Q9UBB9 837 aaKnown RBP7.17□□□□□ -1.26
CKS1BP3-201ENST00000600888 DACH1Q9UI36 760 aa7.17□□□□□ -1.26
CKS1BP3-201ENST00000600888 ATP9BO43861 1147 aa7.16□□□□□ -1.26
CKS1BP3-201ENST00000600888 USP4Q13107 963 aa7.16□□□□□ -1.26
CKS1BP3-201ENST00000600888 PPP1R12CQ9BZL4 782 aa7.16□□□□□ -1.26
CKS1BP3-201ENST00000600888 PALM3A6NDB9 673 aaPredicted RBP7.15□□□□□ -1.26
CKS1BP3-201ENST00000600888 USP17L5A8MUK1 530 aa7.15□□□□□ -1.26
CKS1BP3-201ENST00000600888 SUPT5HO00267 1087 aaKnown RBP7.15□□□□□ -1.26
CKS1BP3-201ENST00000600888 LZTS3O60299 673 aaPredicted RBP7.15□□□□□ -1.26
CKS1BP3-201ENST00000600888 OXLD1Q5BKU9 147 aa7.15□□□□□ -1.26
CKS1BP3-201ENST00000600888 MEIOBQ8N635 442 aa7.15□□□□□ -1.26
CKS1BP3-201ENST00000600888 ESF1Q9H501 851 aaKnown RBP7.15□□□□□ -1.26
CKS1BP3-201ENST00000600888 MYCP01106 439 aaPredicted RBP7.14□□□□□ -1.27
CKS1BP3-201ENST00000600888 MRPL14Q6P1L8 145 aaKnown RBP7.14□□□□□ -1.27
CKS1BP3-201ENST00000600888 TRIM46Q7Z4K8 759 aa7.14□□□□□ -1.27
CKS1BP3-201ENST00000600888 DEPDC4Q8N2C3 294 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms