RNA–Protein interactions for RNA: ENST00000577901.5

VAPA-204, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 917 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-204ENST00000577901 ROCK2O75116 1388 aaKnown RBP22.75■■□□□ 1.23
VAPA-204ENST00000577901 PEAK1Q9H792 1746 aa22.74■■□□□ 1.23
VAPA-204ENST00000577901 TTC21BQ7Z4L5 1316 aa22.74■■□□□ 1.23
VAPA-204ENST00000577901 WDR17Q8IZU2 1322 aa22.74■■□□□ 1.23
VAPA-204ENST00000577901 CLSPNQ9HAW4 1339 aa22.74■■□□□ 1.23
VAPA-204ENST00000577901 LRRC37A3O60309 1634 aa22.74■■□□□ 1.23
VAPA-204ENST00000577901 COL18A1P39060 1754 aa22.73■■□□□ 1.23
VAPA-204ENST00000577901 ADRA2BP18089 450 aa22.73■■□□□ 1.23
VAPA-204ENST00000577901 CPSF1Q10570 1443 aaKnown RBP22.73■■□□□ 1.23
VAPA-204ENST00000577901 ARHGEF25Q86VW2 580 aa22.72■■□□□ 1.23
VAPA-204ENST00000577901 KCNH5Q8NCM2 988 aa22.72■■□□□ 1.23
VAPA-204ENST00000577901 SOX12O15370 315 aa22.7■■□□□ 1.22
VAPA-204ENST00000577901 TTC21AQ8NDW8 1320 aa22.7■■□□□ 1.22
VAPA-204ENST00000577901 PLSCR1O15162 318 aa22.69■■□□□ 1.22
VAPA-204ENST00000577901 CDCA7Q9BWT1 371 aaPredicted RBP22.69■■□□□ 1.22
VAPA-204ENST00000577901 AKAP12Q02952 1782 aa22.68■■□□□ 1.22
VAPA-204ENST00000577901 CCER1Q8TC90 406 aaPredicted RBP22.68■■□□□ 1.22
VAPA-204ENST00000577901 BCL11BQ9C0K0 894 aaPredicted RBP22.68■■□□□ 1.22
VAPA-204ENST00000577901 CSB-PGBD3P0DP91 1061 aa22.67■■□□□ 1.22
VAPA-204ENST00000577901 MARCH10Q8NA82 808 aaPredicted RBP22.67■■□□□ 1.22
VAPA-204ENST00000577901 CARD10Q9BWT7 1032 aa22.67■■□□□ 1.22
VAPA-204ENST00000577901 SPON1Q9HCB6 807 aa22.67■■□□□ 1.22
VAPA-204ENST00000577901 SBF2Q86WG5 1849 aa22.66■■□□□ 1.22
VAPA-204ENST00000577901 WNK3Q9BYP7 1800 aa22.66■■□□□ 1.22
VAPA-204ENST00000577901 RGPD3A6NKT7 1758 aaPredicted RBP22.66■■□□□ 1.22
VAPA-204ENST00000577901 RGPD4Q7Z3J3 1758 aa22.66■■□□□ 1.22
VAPA-204ENST00000577901 KTN1Q86UP2 1357 aaKnown RBP22.66■■□□□ 1.22
VAPA-204ENST00000577901 PTF1AQ7RTS3 328 aa22.66■■□□□ 1.22
VAPA-204ENST00000577901 TIMELESSQ9UNS1 1208 aa22.66■■□□□ 1.22
VAPA-204ENST00000577901 KCNQ2O43526 872 aa22.65■■□□□ 1.22
VAPA-204ENST00000577901 NFAT5O94916 1531 aa22.64■■□□□ 1.21
VAPA-204ENST00000577901 PPP1R1BQ9UD71 204 aaPredicted RBP22.64■■□□□ 1.21
VAPA-204ENST00000577901 BCL9O00512 1426 aa22.64■■□□□ 1.21
VAPA-204ENST00000577901 CARD11Q9BXL7 1154 aa22.63■■□□□ 1.21
VAPA-204ENST00000577901 RGPD5Q99666 1765 aa22.63■■□□□ 1.21
VAPA-204ENST00000577901 EXOC5O00471 708 aa22.61■■□□□ 1.21
VAPA-204ENST00000577901 ANO8Q9HCE9 1232 aaPredicted RBP22.61■■□□□ 1.21
VAPA-204ENST00000577901 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.6■■□□□ 1.21
VAPA-204ENST00000577901 ABCC6O95255 1503 aa22.6■■□□□ 1.21
VAPA-204ENST00000577901 CCDC7Q96M83 1385 aa22.6■■□□□ 1.21
VAPA-204ENST00000577901 SBNO2Q9Y2G9 1366 aa22.6■■□□□ 1.21
VAPA-204ENST00000577901 MON2Q7Z3U7 1717 aa22.6■■□□□ 1.21
VAPA-204ENST00000577901 PROM2Q8N271 834 aa22.59■■□□□ 1.21
VAPA-204ENST00000577901 USP31Q70CQ4 1352 aa22.58■■□□□ 1.21
VAPA-204ENST00000577901 NINLQ9Y2I6 1382 aa22.56■■□□□ 1.2
VAPA-204ENST00000577901 NME9Q86XW9 330 aa22.56■■□□□ 1.2
VAPA-204ENST00000577901 TNS2Q63HR2 1409 aa22.56■■□□□ 1.2
VAPA-204ENST00000577901 CD163L1Q9NR16 1453 aa22.55■■□□□ 1.2
VAPA-204ENST00000577901 TMC1Q8TDI8 760 aa22.55■■□□□ 1.2
VAPA-204ENST00000577901 CASZ1Q86V15 1759 aa22.55■■□□□ 1.2
VAPA-204ENST00000577901 TXNRD1Q16881 649 aa22.54■■□□□ 1.2
VAPA-204ENST00000577901 PDGFDQ9GZP0 370 aaPredicted RBP22.54■■□□□ 1.2
VAPA-204ENST00000577901 USP54Q70EL1 1684 aa22.53■■□□□ 1.2
VAPA-204ENST00000577901 YY1P25490 414 aa22.53■■□□□ 1.2
VAPA-204ENST00000577901 HDGFL2Q7Z4V5 671 aaPredicted RBP22.53■■□□□ 1.2
VAPA-204ENST00000577901 NLRP2Q9NX02 1062 aa22.53■■□□□ 1.2
VAPA-204ENST00000577901 ERBB3P21860 1342 aa22.53■■□□□ 1.2
VAPA-204ENST00000577901 DCAF8L1A6NGE4 600 aa22.52■■□□□ 1.2
VAPA-204ENST00000577901 SLC12A5Q9H2X9 1139 aa22.52■■□□□ 1.2
VAPA-204ENST00000577901 STK32BQ9NY57 414 aa22.52■■□□□ 1.2
VAPA-204ENST00000577901 ZBTB7AO95365 584 aa22.51■■□□□ 1.19
VAPA-204ENST00000577901 EDC4Q6P2E9 1401 aaKnown RBP22.49■■□□□ 1.19
VAPA-204ENST00000577901 IL2RBP14784 551 aa22.49■■□□□ 1.19
VAPA-204ENST00000577901 SLC15A2Q16348 729 aa22.49■■□□□ 1.19
VAPA-204ENST00000577901 ANKRD24Q8TF21 1146 aa22.49■■□□□ 1.19
VAPA-204ENST00000577901 ACSBG1Q96GR2 724 aa22.48■■□□□ 1.19
VAPA-204ENST00000577901 TERF2IPQ9NYB0 399 aa22.48■■□□□ 1.19
VAPA-204ENST00000577901 NHSQ6T4R5 1651 aa22.48■■□□□ 1.19
VAPA-204ENST00000577901 LTN1O94822 1766 aa22.48■■□□□ 1.19
VAPA-204ENST00000577901 PTGER2P43116 358 aa22.47■■□□□ 1.19
VAPA-204ENST00000577901 ATF5Q9Y2D1 282 aaPredicted RBP22.47■■□□□ 1.19
VAPA-204ENST00000577901 A0A1W2PP64 1363 aa22.46■■□□□ 1.19
VAPA-204ENST00000577901 SLC24A1O60721 1099 aa22.45■■□□□ 1.18
VAPA-204ENST00000577901 PUS7Q96PZ0 661 aaKnown RBP22.45■■□□□ 1.18
VAPA-204ENST00000577901 MYOM1P52179 1685 aa22.44■■□□□ 1.18
VAPA-204ENST00000577901 ST20-MTHFSA0A0A6YYL1 179 aa22.42■■□□□ 1.18
VAPA-204ENST00000577901 MTFR1LQ9H019 292 aa22.42■■□□□ 1.18
VAPA-204ENST00000577901 IP6K1Q92551 441 aa22.41■■□□□ 1.18
VAPA-204ENST00000577901 USP47Q96K76 1375 aa22.38■■□□□ 1.17
VAPA-204ENST00000577901 LTV1Q96GA3 475 aaPredicted RBP22.38■■□□□ 1.17
VAPA-204ENST00000577901 FHDC1Q9C0D6 1143 aaPredicted RBP22.38■■□□□ 1.17
VAPA-204ENST00000577901 PAPPAQ13219 1627 aa22.38■■□□□ 1.17
VAPA-204ENST00000577901 BTAF1O14981 1849 aa22.38■■□□□ 1.17
VAPA-204ENST00000577901 DDX54Q8TDD1 881 aaKnown RBP22.37■■□□□ 1.17
VAPA-204ENST00000577901 TESK2Q96S53 571 aa22.37■■□□□ 1.17
VAPA-204ENST00000577901 SGIP1Q9BQI5 828 aa22.37■■□□□ 1.17
VAPA-204ENST00000577901 UTRNP46939 3433 aa22.37■■□□□ 1.17
VAPA-204ENST00000577901 COG3Q96JB2 828 aa22.36■■□□□ 1.17
VAPA-204ENST00000577901 SYT17Q9BSW7 474 aa22.36■■□□□ 1.17
VAPA-204ENST00000577901 LRRC4BQ9NT99 713 aa22.35■■□□□ 1.17
VAPA-204ENST00000577901 FAM208AQ9UK61 1670 aaKnown RBP22.34■■□□□ 1.17
VAPA-204ENST00000577901 ZNF827Q17R98 1081 aa22.34■■□□□ 1.17
VAPA-204ENST00000577901 MAP3K19Q56UN5 1328 aa22.33■■□□□ 1.17
VAPA-204ENST00000577901 HOXC9P31274 260 aa22.32■■□□□ 1.16
VAPA-204ENST00000577901 TMF1P82094 1093 aa22.32■■□□□ 1.16
VAPA-204ENST00000577901 ARXQ96QS3 562 aa22.32■■□□□ 1.16
VAPA-204ENST00000577901 FBLN1P23142 703 aa22.31■■□□□ 1.16
VAPA-204ENST00000577901 AMPHP49418 695 aa22.31■■□□□ 1.16
VAPA-204ENST00000577901 SLC27A3Q5K4L6 730 aa22.31■■□□□ 1.16
VAPA-204ENST00000577901 AKT1S1Q96B36 256 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms