RNA–Protein interactions for RNA: ENST00000573994.1

RPA1-206, Transcript of replication protein A1, humanhuman

TSL 2

Gene RPA1, Length 844 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-206ENST00000573994 SLIT3O75094 1523 aa14.12□□□□□ -0.15
RPA1-206ENST00000573994 GCP02774 474 aa14.12□□□□□ -0.15
RPA1-206ENST00000573994 TTC21BQ7Z4L5 1316 aa14.12□□□□□ -0.15
RPA1-206ENST00000573994 KTN1Q86UP2 1357 aaKnown RBP14.11□□□□□ -0.15
RPA1-206ENST00000573994 SOX12O15370 315 aa14.11□□□□□ -0.15
RPA1-206ENST00000573994 CPSF1Q10570 1443 aaKnown RBP14.11□□□□□ -0.15
RPA1-206ENST00000573994 CHADLQ6NUI6 762 aa14.11□□□□□ -0.15
RPA1-206ENST00000573994 TMC1Q8TDI8 760 aa14.11□□□□□ -0.15
RPA1-206ENST00000573994 CAMTA1Q9Y6Y1 1673 aa14.1□□□□□ -0.15
RPA1-206ENST00000573994 AKAP12Q02952 1782 aa14.1□□□□□ -0.15
RPA1-206ENST00000573994 ST20-MTHFSA0A0A6YYL1 179 aa14.1□□□□□ -0.15
RPA1-206ENST00000573994 ONECUT3O60422 494 aaPredicted RBP14.1□□□□□ -0.15
RPA1-206ENST00000573994 KRT27Q7Z3Y8 459 aa14.1□□□□□ -0.15
RPA1-206ENST00000573994 CD163L1Q9NR16 1453 aa14.1□□□□□ -0.15
RPA1-206ENST00000573994 BRWD3Q6RI45 1802 aa14.1□□□□□ -0.15
RPA1-206ENST00000573994 LMO7Q8WWI1 1683 aa14.1□□□□□ -0.15
RPA1-206ENST00000573994 USP47Q96K76 1375 aa14.09□□□□□ -0.15
RPA1-206ENST00000573994 LARP1Q6PKG0 1096 aaKnown RBP14.09□□□□□ -0.15
RPA1-206ENST00000573994 USP35Q9P2H5 1018 aa14.09□□□□□ -0.15
RPA1-206ENST00000573994 SPATA31A1Q5TZJ5 1347 aa14.09□□□□□ -0.15
RPA1-206ENST00000573994 THSD7AQ9UPZ6 1657 aa14.08□□□□□ -0.16
RPA1-206ENST00000573994 COL5A2P05997 1499 aaPredicted RBP14.08□□□□□ -0.16
RPA1-206ENST00000573994 EVA1CP58658 441 aa14.08□□□□□ -0.16
RPA1-206ENST00000573994 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.08□□□□□ -0.16
RPA1-206ENST00000573994 TESK2Q96S53 571 aa14.08□□□□□ -0.16
RPA1-206ENST00000573994 SLC12A5Q9H2X9 1139 aa14.08□□□□□ -0.16
RPA1-206ENST00000573994 TTC21AQ8NDW8 1320 aa14.08□□□□□ -0.16
RPA1-206ENST00000573994 BLMP54132 1417 aaPredicted RBP14.07□□□□□ -0.16
RPA1-206ENST00000573994 MON2Q7Z3U7 1717 aa14.07□□□□□ -0.16
RPA1-206ENST00000573994 SLC24A1O60721 1099 aa14.07□□□□□ -0.16
RPA1-206ENST00000573994 FAM182BQ5T319 152 aa14.07□□□□□ -0.16
RPA1-206ENST00000573994 ZRANB1Q9UGI0 708 aa14.07□□□□□ -0.16
RPA1-206ENST00000573994 A0A1W2PP64 1363 aa14.07□□□□□ -0.16
RPA1-206ENST00000573994 NME9Q86XW9 330 aa14.06□□□□□ -0.16
RPA1-206ENST00000573994 NFAT5O94916 1531 aa14.05□□□□□ -0.16
RPA1-206ENST00000573994 HDGFL2Q7Z4V5 671 aaPredicted RBP14.05□□□□□ -0.16
RPA1-206ENST00000573994 TIMELESSQ9UNS1 1208 aa14.05□□□□□ -0.16
RPA1-206ENST00000573994 CLSPNQ9HAW4 1339 aa14.05□□□□□ -0.16
RPA1-206ENST00000573994 AATKQ6ZMQ8 1374 aa14.05□□□□□ -0.16
RPA1-206ENST00000573994 C19orf67A6NJJ6 358 aa14.04□□□□□ -0.16
RPA1-206ENST00000573994 DEFB132Q7Z7B7 95 aa14.04□□□□□ -0.16
RPA1-206ENST00000573994 EDC4Q6P2E9 1401 aaKnown RBP14.04□□□□□ -0.16
RPA1-206ENST00000573994 CCDC125Q86Z20 511 aa14.03□□□□□ -0.16
RPA1-206ENST00000573994 TCP11L2Q8N4U5 519 aa14.03□□□□□ -0.16
RPA1-206ENST00000573994 CCER1Q8TC90 406 aaPredicted RBP14.03□□□□□ -0.16
RPA1-206ENST00000573994 CRB1P82279 1406 aa14.02□□□□□ -0.16
RPA1-206ENST00000573994 SF3B2Q13435 895 aaKnown RBP14.02□□□□□ -0.17
RPA1-206ENST00000573994 KCNH5Q8NCM2 988 aa14.02□□□□□ -0.17
RPA1-206ENST00000573994 PUS7Q96PZ0 661 aaKnown RBP14.02□□□□□ -0.17
RPA1-206ENST00000573994 TERF2IPQ9NYB0 399 aa14.02□□□□□ -0.17
RPA1-206ENST00000573994 AXIN2Q9Y2T1 843 aa14.02□□□□□ -0.17
RPA1-206ENST00000573994 SRCAPQ6ZRS2 3230 aa14.02□□□□□ -0.17
RPA1-206ENST00000573994 USP31Q70CQ4 1352 aa14.01□□□□□ -0.17
RPA1-206ENST00000573994 NINLQ9Y2I6 1382 aa14.01□□□□□ -0.17
RPA1-206ENST00000573994 BARGINQ6ZT62 677 aa14.01□□□□□ -0.17
RPA1-206ENST00000573994 ARHGEF25Q86VW2 580 aa14.01□□□□□ -0.17
RPA1-206ENST00000573994 TMF1P82094 1093 aa14□□□□□ -0.17
RPA1-206ENST00000573994 TOM1L2Q6ZVM7 507 aa14□□□□□ -0.17
RPA1-206ENST00000573994 FARP1Q9Y4F1 1045 aaPredicted RBP14□□□□□ -0.17
RPA1-206ENST00000573994 COL18A1P39060 1754 aa14□□□□□ -0.17
RPA1-206ENST00000573994 OVOS2A0A0J9YW53 1432 aa13.99□□□□□ -0.17
RPA1-206ENST00000573994 OVOS2Q6IE36 1432 aa13.99□□□□□ -0.17
RPA1-206ENST00000573994 WDR17Q8IZU2 1322 aa13.99□□□□□ -0.17
RPA1-206ENST00000573994 USP54Q70EL1 1684 aa13.98□□□□□ -0.17
RPA1-206ENST00000573994 CSB-PGBD3P0DP91 1061 aa13.98□□□□□ -0.17
RPA1-206ENST00000573994 ANKRD36BQ8N2N9 1353 aa13.97□□□□□ -0.17
RPA1-206ENST00000573994 PDE3BQ13370 1112 aa13.97□□□□□ -0.17
RPA1-206ENST00000573994 THRAP3Q9Y2W1 955 aaKnown RBP13.97□□□□□ -0.17
RPA1-206ENST00000573994 ABCC6O95255 1503 aa13.96□□□□□ -0.17
RPA1-206ENST00000573994 BAG6P46379 1132 aa13.96□□□□□ -0.17
RPA1-206ENST00000573994 LRRC37A3O60309 1634 aa13.96□□□□□ -0.17
RPA1-206ENST00000573994 TRIM37O94972 964 aa13.95□□□□□ -0.18
RPA1-206ENST00000573994 FAM196AQ6ZSG2 479 aa13.95□□□□□ -0.18
RPA1-206ENST00000573994 RGPD1P0DJD0 1748 aa13.95□□□□□ -0.18
RPA1-206ENST00000573994 TNS1Q9HBL0 1735 aaKnown RBP13.95□□□□□ -0.18
RPA1-206ENST00000573994 PARP4Q9UKK3 1724 aaKnown RBP13.95□□□□□ -0.18
RPA1-206ENST00000573994 EN1Q05925 392 aaPredicted RBP13.94□□□□□ -0.18
RPA1-206ENST00000573994 COG3Q96JB2 828 aa13.93□□□□□ -0.18
RPA1-206ENST00000573994 CARD10Q9BWT7 1032 aa13.93□□□□□ -0.18
RPA1-206ENST00000573994 ERBB3P21860 1342 aa13.92□□□□□ -0.18
RPA1-206ENST00000573994 DISP2A7MBM2 1401 aa13.92□□□□□ -0.18
RPA1-206ENST00000573994 RGPD5Q99666 1765 aa13.92□□□□□ -0.18
RPA1-206ENST00000573994 EVX2Q03828 476 aa13.92□□□□□ -0.18
RPA1-206ENST00000573994 DDB1Q16531 1140 aa13.92□□□□□ -0.18
RPA1-206ENST00000573994 CDCA8Q53HL2 280 aa13.92□□□□□ -0.18
RPA1-206ENST00000573994 WNK3Q9BYP7 1800 aa13.92□□□□□ -0.18
RPA1-206ENST00000573994 MYOM1P52179 1685 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 LTN1O94822 1766 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 OVOS2A0A0G2JMS6 1433 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 NSD3Q9BZ95 1437 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 FBLN1P23142 703 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 ANKRD24Q8TF21 1146 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 POLR3GLQ9BT43 218 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 GGNBP2Q9H3C7 697 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 NLRP2Q9NX02 1062 aa13.91□□□□□ -0.18
RPA1-206ENST00000573994 MAP3K19Q56UN5 1328 aa13.9□□□□□ -0.18
RPA1-206ENST00000573994 CD44P16070 742 aaKnown RBP13.9□□□□□ -0.18
RPA1-206ENST00000573994 LTV1Q96GA3 475 aaPredicted RBP13.9□□□□□ -0.18
RPA1-206ENST00000573994 CCDC7Q96M83 1385 aa13.9□□□□□ -0.18
RPA1-206ENST00000573994 PSDA5PKW4 1024 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms