RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CDCA7Q9BWT1 371 aaPredicted RBP26.52■■□□□ 1.84
CLN3-218ENST00000565688 NFAT5O94916 1531 aa26.51■■□□□ 1.83
CLN3-218ENST00000565688 OVOS2A0A0G2JMS6 1433 aa26.51■■□□□ 1.83
CLN3-218ENST00000565688 OVOS2A0A0J9YW53 1432 aa26.51■■□□□ 1.83
CLN3-218ENST00000565688 OVOS2Q6IE36 1432 aa26.51■■□□□ 1.83
CLN3-218ENST00000565688 SOX12O15370 315 aa26.51■■□□□ 1.83
CLN3-218ENST00000565688 R3HDM1Q15032 1099 aaKnown RBP26.51■■□□□ 1.83
CLN3-218ENST00000565688 DDB1Q16531 1140 aa26.51■■□□□ 1.83
CLN3-218ENST00000565688 PUS7Q96PZ0 661 aaKnown RBP26.51■■□□□ 1.83
CLN3-218ENST00000565688 USP31Q70CQ4 1352 aa26.5■■□□□ 1.83
CLN3-218ENST00000565688 HDGFL2Q7Z4V5 671 aaPredicted RBP26.5■■□□□ 1.83
CLN3-218ENST00000565688 TMC1Q8TDI8 760 aa26.5■■□□□ 1.83
CLN3-218ENST00000565688 ABCC6O95255 1503 aa26.49■■□□□ 1.83
CLN3-218ENST00000565688 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.49■■□□□ 1.83
CLN3-218ENST00000565688 CD163L1Q9NR16 1453 aa26.49■■□□□ 1.83
CLN3-218ENST00000565688 LRRC37A3O60309 1634 aa26.48■■□□□ 1.83
CLN3-218ENST00000565688 CSB-PGBD3P0DP91 1061 aa26.48■■□□□ 1.83
CLN3-218ENST00000565688 TRIM26Q12899 539 aaPredicted RBP26.48■■□□□ 1.83
CLN3-218ENST00000565688 CARD10Q9BWT7 1032 aa26.48■■□□□ 1.83
CLN3-218ENST00000565688 TERF2IPQ9NYB0 399 aa26.47■■□□□ 1.83
CLN3-218ENST00000565688 SLC24A1O60721 1099 aa26.46■■□□□ 1.83
CLN3-218ENST00000565688 SLC12A5Q9H2X9 1139 aa26.46■■□□□ 1.83
CLN3-218ENST00000565688 PEAK1Q9H792 1746 aa26.45■■□□□ 1.83
CLN3-218ENST00000565688 USP54Q70EL1 1684 aa26.45■■□□□ 1.82
CLN3-218ENST00000565688 EDC4Q6P2E9 1401 aaKnown RBP26.45■■□□□ 1.82
CLN3-218ENST00000565688 RREB1Q92766 1687 aa26.44■■□□□ 1.82
CLN3-218ENST00000565688 WNK3Q9BYP7 1800 aa26.44■■□□□ 1.82
CLN3-218ENST00000565688 RGPD5Q99666 1765 aa26.43■■□□□ 1.82
CLN3-218ENST00000565688 NBPF14Q5TI25 921 aa26.43■■□□□ 1.82
CLN3-218ENST00000565688 NME9Q86XW9 330 aa26.43■■□□□ 1.82
CLN3-218ENST00000565688 CCDC7Q96M83 1385 aa26.43■■□□□ 1.82
CLN3-218ENST00000565688 NINLQ9Y2I6 1382 aa26.42■■□□□ 1.82
CLN3-218ENST00000565688 BCL9O00512 1426 aa26.4■■□□□ 1.82
CLN3-218ENST00000565688 TESK2Q96S53 571 aa26.4■■□□□ 1.82
CLN3-218ENST00000565688 A0A1W2PP64 1363 aa26.4■■□□□ 1.82
CLN3-218ENST00000565688 NUP188Q5SRE5 1749 aa26.39■■□□□ 1.82
CLN3-218ENST00000565688 ST20-MTHFSA0A0A6YYL1 179 aa26.39■■□□□ 1.82
CLN3-218ENST00000565688 BCL11BQ9C0K0 894 aaPredicted RBP26.39■■□□□ 1.82
CLN3-218ENST00000565688 PLSCR1O15162 318 aa26.38■■□□□ 1.81
CLN3-218ENST00000565688 MARCH10Q8NA82 808 aaPredicted RBP26.38■■□□□ 1.81
CLN3-218ENST00000565688 EXOC5O00471 708 aa26.37■■□□□ 1.81
CLN3-218ENST00000565688 SBF2Q86WG5 1849 aa26.37■■□□□ 1.81
CLN3-218ENST00000565688 ERBB3P21860 1342 aa26.37■■□□□ 1.81
CLN3-218ENST00000565688 RGPD3A6NKT7 1758 aaPredicted RBP26.35■■□□□ 1.81
CLN3-218ENST00000565688 RGPD4Q7Z3J3 1758 aa26.35■■□□□ 1.81
CLN3-218ENST00000565688 LTN1O94822 1766 aa26.33■■□□□ 1.81
CLN3-218ENST00000565688 NLRP2Q9NX02 1062 aa26.33■■□□□ 1.81
CLN3-218ENST00000565688 TNS2Q63HR2 1409 aa26.32■■□□□ 1.8
CLN3-218ENST00000565688 ANKRD24Q8TF21 1146 aa26.3■■□□□ 1.8
CLN3-218ENST00000565688 IL2RBP14784 551 aa26.28■■□□□ 1.8
CLN3-218ENST00000565688 PTF1AQ7RTS3 328 aa26.28■■□□□ 1.8
CLN3-218ENST00000565688 COG3Q96JB2 828 aa26.28■■□□□ 1.8
CLN3-218ENST00000565688 IP6K1Q92551 441 aa26.27■■□□□ 1.8
CLN3-218ENST00000565688 ANKRD36BQ8N2N9 1353 aa26.26■■□□□ 1.79
CLN3-218ENST00000565688 USP47Q96K76 1375 aa26.26■■□□□ 1.79
CLN3-218ENST00000565688 TMF1P82094 1093 aa26.26■■□□□ 1.79
CLN3-218ENST00000565688 PROM2Q8N271 834 aa26.22■■□□□ 1.79
CLN3-218ENST00000565688 SPON1Q9HCB6 807 aa26.22■■□□□ 1.79
CLN3-218ENST00000565688 CDCA8Q53HL2 280 aa26.21■■□□□ 1.79
CLN3-218ENST00000565688 FAM208AQ9UK61 1670 aaKnown RBP26.2■■□□□ 1.78
CLN3-218ENST00000565688 KCNQ2O43526 872 aa26.2■■□□□ 1.78
CLN3-218ENST00000565688 TIMELESSQ9UNS1 1208 aa26.2■■□□□ 1.78
CLN3-218ENST00000565688 NHSQ6T4R5 1651 aa26.19■■□□□ 1.78
CLN3-218ENST00000565688 TXNRD1Q16881 649 aa26.19■■□□□ 1.78
CLN3-218ENST00000565688 ANO8Q9HCE9 1232 aaPredicted RBP26.19■■□□□ 1.78
CLN3-218ENST00000565688 MAP3K19Q56UN5 1328 aa26.18■■□□□ 1.78
CLN3-218ENST00000565688 AMPHP49418 695 aa26.18■■□□□ 1.78
CLN3-218ENST00000565688 HOXC9P31274 260 aa26.17■■□□□ 1.78
CLN3-218ENST00000565688 LTV1Q96GA3 475 aaPredicted RBP26.17■■□□□ 1.78
CLN3-218ENST00000565688 PPP1R1BQ9UD71 204 aaPredicted RBP26.16■■□□□ 1.78
CLN3-218ENST00000565688 ACSBG1Q96GR2 724 aa26.15■■□□□ 1.78
CLN3-218ENST00000565688 STK32BQ9NY57 414 aa26.15■■□□□ 1.78
CLN3-218ENST00000565688 CLSPNQ9HAW4 1339 aa26.14■■□□□ 1.78
CLN3-218ENST00000565688 FYB1O15117 783 aa26.14■■□□□ 1.78
CLN3-218ENST00000565688 RTL1A6NKG5 1358 aa26.14■■□□□ 1.78
CLN3-218ENST00000565688 CASZ1Q86V15 1759 aa26.11■■□□□ 1.77
CLN3-218ENST00000565688 FBLN1P23142 703 aa26.11■■□□□ 1.77
CLN3-218ENST00000565688 GGNBP2Q9H3C7 697 aa26.11■■□□□ 1.77
CLN3-218ENST00000565688 SLC15A2Q16348 729 aa26.1■■□□□ 1.77
CLN3-218ENST00000565688 DDX54Q8TDD1 881 aaKnown RBP26.09■■□□□ 1.77
CLN3-218ENST00000565688 RRS1Q15050 365 aaKnown RBP26.08■■□□□ 1.77
CLN3-218ENST00000565688 BTAF1O14981 1849 aa26.07■■□□□ 1.76
CLN3-218ENST00000565688 SMG6Q86US8 1419 aaKnown RBP26.06■■□□□ 1.76
CLN3-218ENST00000565688 PDGFDQ9GZP0 370 aaPredicted RBP26.06■■□□□ 1.76
CLN3-218ENST00000565688 ZBTB7AO95365 584 aa26.04■■□□□ 1.76
CLN3-218ENST00000565688 ZCRB1Q8TBF4 217 aaKnown RBP26.04■■□□□ 1.76
CLN3-218ENST00000565688 PCGF6Q9BYE7 350 aa26.04■■□□□ 1.76
CLN3-218ENST00000565688 KIF20BQ96Q89 1820 aa26.04■■□□□ 1.76
CLN3-218ENST00000565688 KIF24Q5T7B8 1368 aa26.04■■□□□ 1.76
CLN3-218ENST00000565688 CGNL1Q0VF96 1302 aa26.03■■□□□ 1.76
CLN3-218ENST00000565688 KAT6BQ8WYB5 2073 aa26.03■■□□□ 1.76
CLN3-218ENST00000565688 NBPF6Q5VWK0 638 aa26.02■■□□□ 1.76
CLN3-218ENST00000565688 NBPF4Q96M43 638 aa26.02■■□□□ 1.76
CLN3-218ENST00000565688 DCAF8L1A6NGE4 600 aa26.01■■□□□ 1.75
CLN3-218ENST00000565688 MEGF6O75095 1541 aa26.01■■□□□ 1.75
CLN3-218ENST00000565688 INSRP06213 1382 aa26.01■■□□□ 1.75
CLN3-218ENST00000565688 RGPD2P0DJD1 1756 aa26.01■■□□□ 1.75
CLN3-218ENST00000565688 FLT4P35916 1363 aa26.01■■□□□ 1.75
CLN3-218ENST00000565688 PAPPAQ13219 1627 aa26.01■■□□□ 1.75
CLN3-218ENST00000565688 MYOM1P52179 1685 aa26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms