RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ADGRB2O60241 1585 aa16.7■□□□□ 0.26
CLK3-206ENST00000562078 GTF2E1P29083 439 aaPredicted RBP16.7■□□□□ 0.26
CLK3-206ENST00000562078 DMRT2Q9Y5R5 561 aa16.7■□□□□ 0.26
CLK3-206ENST00000562078 NKTRP30414 1462 aaKnown RBP16.69■□□□□ 0.26
CLK3-206ENST00000562078 KCNA6P17658 529 aa16.69■□□□□ 0.26
CLK3-206ENST00000562078 HDGFL2Q7Z4V5 671 aaPredicted RBP16.69■□□□□ 0.26
CLK3-206ENST00000562078 CABP1Q9NZU7 370 aa16.69■□□□□ 0.26
CLK3-206ENST00000562078 R3HCC1Q9Y3T6 440 aaKnown RBP16.69■□□□□ 0.26
CLK3-206ENST00000562078 TRMT2AQ8IZ69 625 aaKnown RBP16.68■□□□□ 0.26
CLK3-206ENST00000562078 ISY1Q9ULR0 285 aaKnown RBP16.68■□□□□ 0.26
CLK3-206ENST00000562078 ATP7BP35670 1465 aa16.68■□□□□ 0.26
CLK3-206ENST00000562078 FYB1O15117 783 aa16.68■□□□□ 0.26
CLK3-206ENST00000562078 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.68■□□□□ 0.26
CLK3-206ENST00000562078 RUNDC1Q96C34 613 aa16.68■□□□□ 0.26
CLK3-206ENST00000562078 TBC1D32Q96NH3 1257 aa16.68■□□□□ 0.26
CLK3-206ENST00000562078 MAP2P11137 1827 aaKnown RBP16.67■□□□□ 0.26
CLK3-206ENST00000562078 ITSN1Q15811 1721 aa16.67■□□□□ 0.26
CLK3-206ENST00000562078 NEUROD2Q15784 382 aa16.67■□□□□ 0.26
CLK3-206ENST00000562078 ZSCAN30Q86W11 494 aa16.67■□□□□ 0.26
CLK3-206ENST00000562078 NGEFQ8N5V2 710 aa16.67■□□□□ 0.26
CLK3-206ENST00000562078 RRP7AQ9Y3A4 280 aaKnown RBP16.67■□□□□ 0.26
CLK3-206ENST00000562078 CHMP5Q9NZZ3 219 aa16.67■□□□□ 0.26
CLK3-206ENST00000562078 COL3A1P02461 1466 aaPredicted RBP16.66■□□□□ 0.26
CLK3-206ENST00000562078 E9PSI1 815 aa16.66■□□□□ 0.26
CLK3-206ENST00000562078 PPIP5K1Q6PFW1 1433 aa16.66■□□□□ 0.26
CLK3-206ENST00000562078 NCBP3Q53F19 620 aaKnown RBP16.65■□□□□ 0.26
CLK3-206ENST00000562078 WWC1Q8IX03 1113 aa16.65■□□□□ 0.26
CLK3-206ENST00000562078 NUDT16Q96DE0 195 aaKnown RBP16.65■□□□□ 0.26
CLK3-206ENST00000562078 MON2Q7Z3U7 1717 aa16.65■□□□□ 0.26
CLK3-206ENST00000562078 TERF1P54274 439 aa16.65■□□□□ 0.26
CLK3-206ENST00000562078 HSPA2P54652 639 aa16.65■□□□□ 0.26
CLK3-206ENST00000562078 TCP11L2Q8N4U5 519 aa16.65■□□□□ 0.26
CLK3-206ENST00000562078 AKAP12Q02952 1782 aa16.65■□□□□ 0.26
CLK3-206ENST00000562078 U2AF1L5P0DN76 240 aaPredicted RBP16.64■□□□□ 0.26
CLK3-206ENST00000562078 U2AF1Q01081 240 aaKnown RBP eCLIP16.64■□□□□ 0.26
CLK3-206ENST00000562078 NUTM2FA1L443 756 aa16.64■□□□□ 0.25
CLK3-206ENST00000562078 UPF2Q9HAU5 1272 aaKnown RBP16.64■□□□□ 0.25
CLK3-206ENST00000562078 UQCRHLA0A096LP55 91 aa16.63■□□□□ 0.25
CLK3-206ENST00000562078 DDX11L8A8MPP1 907 aa16.63■□□□□ 0.25
CLK3-206ENST00000562078 UQCRHP07919 91 aa16.63■□□□□ 0.25
CLK3-206ENST00000562078 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.63■□□□□ 0.25
CLK3-206ENST00000562078 MSNP26038 577 aaKnown RBP16.63■□□□□ 0.25
CLK3-206ENST00000562078 DMTNQ08495 405 aa16.63■□□□□ 0.25
CLK3-206ENST00000562078 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLK3-206ENST00000562078 NAP1L2Q9ULW6 460 aaPredicted RBP16.63■□□□□ 0.25
CLK3-206ENST00000562078 CHMP4BQ9H444 224 aaKnown RBP16.62■□□□□ 0.25
CLK3-206ENST00000562078 CCDC61Q9Y6R9 512 aa16.62■□□□□ 0.25
CLK3-206ENST00000562078 NALCNQ8IZF0 1738 aa16.62■□□□□ 0.25
CLK3-206ENST00000562078 CDC42BPGQ6DT37 1551 aa16.62■□□□□ 0.25
CLK3-206ENST00000562078 TOPAZ1Q8N9V7 1692 aa16.61■□□□□ 0.25
CLK3-206ENST00000562078 LMTK3Q96Q04 1460 aa16.61■□□□□ 0.25
CLK3-206ENST00000562078 CCDC173Q0VFZ6 552 aa16.61■□□□□ 0.25
CLK3-206ENST00000562078 PRR36Q9H6K5 1346 aa16.61■□□□□ 0.25
CLK3-206ENST00000562078 MAPK8IP3Q9UPT6 1336 aa16.61■□□□□ 0.25
CLK3-206ENST00000562078 RGPD8O14715 1765 aaPredicted RBP16.61■□□□□ 0.25
CLK3-206ENST00000562078 U2SURPO15042 1029 aaKnown RBP16.6■□□□□ 0.25
CLK3-206ENST00000562078 CANXP27824 592 aaKnown RBP16.6■□□□□ 0.25
CLK3-206ENST00000562078 UTP14CQ5TAP6 766 aaKnown RBP16.6■□□□□ 0.25
CLK3-206ENST00000562078 ZSCAN20P17040 1043 aaPredicted RBP16.6■□□□□ 0.25
CLK3-206ENST00000562078 PPP1R9BQ96SB3 815 aa16.6■□□□□ 0.25
CLK3-206ENST00000562078 NWD1Q149M9 1564 aa16.59■□□□□ 0.25
CLK3-206ENST00000562078 RBM33Q96EV2 1170 aaKnown RBP16.59■□□□□ 0.25
CLK3-206ENST00000562078 CPSF1Q10570 1443 aaKnown RBP16.59■□□□□ 0.25
CLK3-206ENST00000562078 KLHL34Q8N239 644 aa16.59■□□□□ 0.25
CLK3-206ENST00000562078 PHF23Q9BUL5 403 aaPredicted RBP16.59■□□□□ 0.25
CLK3-206ENST00000562078 EDC4Q6P2E9 1401 aaKnown RBP16.58■□□□□ 0.25
CLK3-206ENST00000562078 BCAR3O75815 825 aa16.58■□□□□ 0.25
CLK3-206ENST00000562078 FMN2Q9NZ56 1722 aa16.58■□□□□ 0.25
CLK3-206ENST00000562078 NASPP49321 788 aaPredicted RBP16.58■□□□□ 0.24
CLK3-206ENST00000562078 XPCQ01831 940 aaPredicted RBP16.57■□□□□ 0.24
CLK3-206ENST00000562078 C14orf37Q86TY3 774 aa16.57■□□□□ 0.24
CLK3-206ENST00000562078 ZNF692Q9BU19 519 aaPredicted RBP16.57■□□□□ 0.24
CLK3-206ENST00000562078 MTERF4Q7Z6M4 381 aaKnown RBP16.56■□□□□ 0.24
CLK3-206ENST00000562078 PPP4R3BQ5MIZ7 849 aa16.56■□□□□ 0.24
CLK3-206ENST00000562078 LRRC7Q96NW7 1537 aa16.56■□□□□ 0.24
CLK3-206ENST00000562078 FBLN1P23142 703 aa16.55■□□□□ 0.24
CLK3-206ENST00000562078 CCDC27Q2M243 656 aa16.55■□□□□ 0.24
CLK3-206ENST00000562078 STRCQ7RTU9 1775 aa16.55■□□□□ 0.24
CLK3-206ENST00000562078 PNPLA6Q8IY17 1366 aa16.55■□□□□ 0.24
CLK3-206ENST00000562078 WDR63Q8IWG1 891 aa16.55■□□□□ 0.24
CLK3-206ENST00000562078 DIAPH1O60610 1272 aaKnown RBP16.54■□□□□ 0.24
CLK3-206ENST00000562078 NRKQ7Z2Y5 1582 aa16.54■□□□□ 0.24
CLK3-206ENST00000562078 ADGRL3Q9HAR2 1447 aa16.54■□□□□ 0.24
CLK3-206ENST00000562078 DYNC1I1O14576 645 aa16.54■□□□□ 0.24
CLK3-206ENST00000562078 NME9Q86XW9 330 aa16.54■□□□□ 0.24
CLK3-206ENST00000562078 TNPO1Q92973 898 aaKnown RBP16.54■□□□□ 0.24
CLK3-206ENST00000562078 PLEKHF1Q96S99 279 aa16.54■□□□□ 0.24
CLK3-206ENST00000562078 CCDC94Q9BW85 323 aaPredicted RBP16.54■□□□□ 0.24
CLK3-206ENST00000562078 ACEP12821 1306 aa16.53■□□□□ 0.24
CLK3-206ENST00000562078 PROSER2Q86WR7 435 aaPredicted RBP16.53■□□□□ 0.24
CLK3-206ENST00000562078 PMFBP1Q8TBY8 1022 aa16.53■□□□□ 0.24
CLK3-206ENST00000562078 ANKARQ7Z5J8 1434 aa16.52■□□□□ 0.24
CLK3-206ENST00000562078 STRCP1A6NGW2 1772 aa16.52■□□□□ 0.24
CLK3-206ENST00000562078 ZRANB1Q9UGI0 708 aa16.52■□□□□ 0.24
CLK3-206ENST00000562078 PLEKHG3A1L390 1219 aa16.52■□□□□ 0.23
CLK3-206ENST00000562078 AEBP2Q6ZN18 517 aaPredicted RBP16.52■□□□□ 0.23
CLK3-206ENST00000562078 ANP32BQ92688 251 aaKnown RBP16.52■□□□□ 0.23
CLK3-206ENST00000562078 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.52■□□□□ 0.23
CLK3-206ENST00000562078 POLKQ9UBT6 870 aa16.52■□□□□ 0.23
CLK3-206ENST00000562078 TAF7LQ5H9L4 462 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms