RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 RUFY2Q8WXA3 655 aa8.55□□□□□ -1.04
USP3-210ENST00000559192 ADGBQ8N7X0 1667 aa8.55□□□□□ -1.04
USP3-210ENST00000559192 HDGFP51858 240 aaKnown RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 SF3A1Q15459 793 aaKnown RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 ALDH1L2Q3SY69 923 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 UBTFL1P0CB47 393 aaPredicted RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 HMGN5P82970 282 aaKnown RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 ZNF830Q96NB3 372 aaPredicted RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 LRRCC1Q9C099 1032 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 DENND4BO75064 1496 aaPredicted RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 WDR33Q9C0J8 1336 aaKnown RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 NPHP1O15259 732 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 MAPK8IP2Q13387 824 aaPredicted RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 NFE2L2Q16236 605 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 TSHZ3Q63HK5 1081 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 ZNF428Q96B54 188 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 LARP6Q9BRS8 491 aaKnown RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 UPF3BQ9BZI7 483 aaKnown RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 MIS18AQ9NYP9 233 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 GNAI2P04899 355 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 CCAR2Q8N163 923 aaKnown RBP8.54□□□□□ -1.04
USP3-210ENST00000559192 USP25Q9UHP3 1055 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 EXOC6BQ9Y2D4 811 aa8.54□□□□□ -1.04
USP3-210ENST00000559192 SNX21Q969T3 373 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 ADAMTS12P58397 1594 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 SURF6O75683 361 aaKnown RBP8.53□□□□□ -1.04
USP3-210ENST00000559192 FCHSD2O94868 740 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 NUP160Q12769 1436 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 NOS1P29475 1434 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 FBLN1P23142 703 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 PRIM1P49642 420 aaKnown RBP8.53□□□□□ -1.04
USP3-210ENST00000559192 CNTROBQ8N137 903 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 SULT6B1Q6IMI4 303 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 SMC5Q8IY18 1101 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 C9orf78Q9NZ63 289 aaPredicted RBP8.53□□□□□ -1.04
USP3-210ENST00000559192 CEBPZQ03701 1054 aaKnown RBP8.53□□□□□ -1.04
USP3-210ENST00000559192 CAMK4Q16566 473 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 IL1RAPL2Q9NP60 686 aa8.53□□□□□ -1.04
USP3-210ENST00000559192 NCBP3Q53F19 620 aaKnown RBP8.52□□□□□ -1.04
USP3-210ENST00000559192 C16orf71Q8IYS4 520 aaPredicted RBP8.52□□□□□ -1.04
USP3-210ENST00000559192 KIF3AQ9Y496 699 aa8.52□□□□□ -1.04
USP3-210ENST00000559192 STK3Q13188 491 aa8.52□□□□□ -1.05
USP3-210ENST00000559192 TTC22Q5TAA0 569 aa8.52□□□□□ -1.05
USP3-210ENST00000559192 ADGRL2O95490 1459 aa8.52□□□□□ -1.05
USP3-210ENST00000559192 NUTM1Q86Y26 1132 aa8.52□□□□□ -1.05
USP3-210ENST00000559192 HOMER1Q86YM7 354 aa8.52□□□□□ -1.05
USP3-210ENST00000559192 ATP10BO94823 1461 aa8.52□□□□□ -1.05
USP3-210ENST00000559192 TPM3P06753 285 aa8.52□□□□□ -1.05
USP3-210ENST00000559192 MCM10Q7L590 875 aa8.52□□□□□ -1.05
USP3-210ENST00000559192 POLR3AO14802 1390 aaPredicted RBP8.51□□□□□ -1.05
USP3-210ENST00000559192 RRP12Q5JTH9 1297 aaKnown RBP8.51□□□□□ -1.05
USP3-210ENST00000559192 GORABQ5T7V8 394 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 CREBRFQ8IUR6 639 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 PDCL2Q8N4E4 241 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 SPDYE4A6NLX3 237 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 CCDC192P0DO97 292 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 RDXP35241 583 aaKnown RBP8.51□□□□□ -1.05
USP3-210ENST00000559192 NUTM2GQ5VZR2 741 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 LRSAM1Q6UWE0 723 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 ZGPATQ8N5A5 531 aaKnown RBP8.51□□□□□ -1.05
USP3-210ENST00000559192 CWC15Q9P013 229 aaKnown RBP8.51□□□□□ -1.05
USP3-210ENST00000559192 ZNF330Q9Y3S2 320 aaPredicted RBP8.51□□□□□ -1.05
USP3-210ENST00000559192 MBD5Q9P267 1494 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 ABCA5Q8WWZ7 1642 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 FAM83GA6ND36 823 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 CWC27Q6UX04 472 aaKnown RBP8.51□□□□□ -1.05
USP3-210ENST00000559192 ABCC11Q96J66 1382 aa8.51□□□□□ -1.05
USP3-210ENST00000559192 SHANK2Q9UPX8 1470 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 PPP4R3BQ5MIZ7 849 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 MBIPQ9NS73 344 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 MAGI2Q86UL8 1455 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 F6X3S4 739 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 GNAI3P08754 354 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 RPAP2Q8IXW5 612 aaPredicted RBP8.5□□□□□ -1.05
USP3-210ENST00000559192 EMILIN1Q9Y6C2 1016 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 PBRM1Q86U86 1689 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 ADCY5O95622 1261 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 DDX54Q8TDD1 881 aaKnown RBP8.5□□□□□ -1.05
USP3-210ENST00000559192 TNMDQ9H2S6 317 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 OFD1O75665 1012 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 AEBP2Q6ZN18 517 aaPredicted RBP8.5□□□□□ -1.05
USP3-210ENST00000559192 RBSNQ9H1K0 784 aa8.5□□□□□ -1.05
USP3-210ENST00000559192 FAM177BA6PVY3 158 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 SDSP20132 328 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 CCT4P50991 539 aaKnown RBP8.49□□□□□ -1.05
USP3-210ENST00000559192 CCDC183Q5T5S1 534 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 RNF20Q5VTR2 975 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 ZBTB40Q9NUA8 1239 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 DISP1Q96F81 1524 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 DYNC1I1O14576 645 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 MX1P20591 662 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 CASTP20810 708 aaKnown RBP8.49□□□□□ -1.05
USP3-210ENST00000559192 HSP90AB3PQ58FF7 597 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 CCDC30Q5VVM6 783 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 CCDC83Q8IWF9 413 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 INSRP06213 1382 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 JAKMIP1Q96N16 626 aaKnown RBP8.49□□□□□ -1.05
USP3-210ENST00000559192 DUOX2Q9NRD8 1548 aa8.49□□□□□ -1.05
USP3-210ENST00000559192 H0YHG0 523 aa8.48□□□□□ -1.05
USP3-210ENST00000559192 KDM4AO75164 1064 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms