RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 RLBP1P12271 317 aa15.06■□□□□ 0
SHMT2-212ENST00000554467 ADAMTSL3P82987 1691 aa15.06■□□□□ 0
SHMT2-212ENST00000554467 TOPAZ1Q8N9V7 1692 aa15.06■□□□□ 0
SHMT2-212ENST00000554467 ANP32AP39687 249 aaKnown RBP15.06■□□□□ 0
SHMT2-212ENST00000554467 SULT6B1Q6IMI4 303 aa15.06■□□□□ 0
SHMT2-212ENST00000554467 AATKQ6ZMQ8 1374 aa15.06■□□□□ 0
SHMT2-212ENST00000554467 NLRP6P59044 892 aa15.05■□□□□ 0
SHMT2-212ENST00000554467 XRN1Q8IZH2 1706 aaKnown RBP15.05■□□□□ -0
SHMT2-212ENST00000554467 CDK12Q9NYV4 1490 aaPredicted RBP15.05■□□□□ -0
SHMT2-212ENST00000554467 XPCQ01831 940 aaPredicted RBP15.04■□□□□ -0
SHMT2-212ENST00000554467 PNNQ9H307 717 aaKnown RBP15.04■□□□□ -0
SHMT2-212ENST00000554467 OVOS2A0A0J9YW53 1432 aa15.04■□□□□ -0
SHMT2-212ENST00000554467 OVOS2Q6IE36 1432 aa15.04■□□□□ -0
SHMT2-212ENST00000554467 ELL2O00472 640 aaPredicted RBP15.04■□□□□ -0
SHMT2-212ENST00000554467 NFE2L2Q16236 605 aa15.04■□□□□ -0
SHMT2-212ENST00000554467 MAP3K19Q56UN5 1328 aa15.04■□□□□ -0
SHMT2-212ENST00000554467 NRKQ7Z2Y5 1582 aa15.03■□□□□ -0
SHMT2-212ENST00000554467 TCERG1O14776 1098 aaKnown RBP15.03■□□□□ -0
SHMT2-212ENST00000554467 SMC4Q9NTJ3 1288 aa15.03■□□□□ -0
SHMT2-212ENST00000554467 SETD1BQ9UPS6 1966 aaKnown RBP15.03■□□□□ -0
SHMT2-212ENST00000554467 ESCO1Q5FWF5 840 aa15.02■□□□□ -0
SHMT2-212ENST00000554467 ABTB2Q8N961 1025 aa15.02■□□□□ -0
SHMT2-212ENST00000554467 ZBTB7CA1YPR0 619 aa15.02■□□□□ -0
SHMT2-212ENST00000554467 SSH1Q8WYL5 1049 aa15.02□□□□□ -0.01
SHMT2-212ENST00000554467 SSH2Q76I76 1423 aa15.02□□□□□ -0.01
SHMT2-212ENST00000554467 LTV1Q96GA3 475 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-212ENST00000554467 AMPHP49418 695 aa15.01□□□□□ -0.01
SHMT2-212ENST00000554467 BRPF3Q9ULD4 1205 aa15.01□□□□□ -0.01
SHMT2-212ENST00000554467 PHF8Q9UPP1 1060 aa15□□□□□ -0.01
SHMT2-212ENST00000554467 PEAK1Q9H792 1746 aa15□□□□□ -0.01
SHMT2-212ENST00000554467 NPHP4O75161 1426 aaPredicted RBP15□□□□□ -0.01
SHMT2-212ENST00000554467 PIK3R4Q99570 1358 aa14.99□□□□□ -0.01
SHMT2-212ENST00000554467 ORAI2Q96SN7 254 aa14.99□□□□□ -0.01
SHMT2-212ENST00000554467 TTC21AQ8NDW8 1320 aa14.99□□□□□ -0.01
SHMT2-212ENST00000554467 KDM2BQ8NHM5 1336 aa14.99□□□□□ -0.01
SHMT2-212ENST00000554467 IGHDP01880 384 aa14.99□□□□□ -0.01
SHMT2-212ENST00000554467 PDE3AQ14432 1141 aa14.99□□□□□ -0.01
SHMT2-212ENST00000554467 TSPYL6Q8N831 410 aa14.99□□□□□ -0.01
SHMT2-212ENST00000554467 NALCNQ8IZF0 1738 aa14.98□□□□□ -0.01
SHMT2-212ENST00000554467 HSPA2P54652 639 aa14.98□□□□□ -0.01
SHMT2-212ENST00000554467 FOXO3O43524 673 aa14.98□□□□□ -0.01
SHMT2-212ENST00000554467 RGS3P49796 1198 aa14.98□□□□□ -0.01
SHMT2-212ENST00000554467 LMOD2Q6P5Q4 547 aa14.98□□□□□ -0.01
SHMT2-212ENST00000554467 MCM10Q7L590 875 aa14.98□□□□□ -0.01
SHMT2-212ENST00000554467 CHD2O14647 1828 aaKnown RBP14.98□□□□□ -0.01
SHMT2-212ENST00000554467 ZNF142P52746 1687 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-212ENST00000554467 FTSJ3Q8IY81 847 aaKnown RBP14.97□□□□□ -0.01
SHMT2-212ENST00000554467 NOB1Q9ULX3 412 aaKnown RBP14.97□□□□□ -0.01
SHMT2-212ENST00000554467 USP31Q70CQ4 1352 aa14.97□□□□□ -0.01
SHMT2-212ENST00000554467 PSME1Q06323 249 aa14.97□□□□□ -0.01
SHMT2-212ENST00000554467 NCBP3Q53F19 620 aaKnown RBP14.97□□□□□ -0.01
SHMT2-212ENST00000554467 MBIPQ9NS73 344 aa14.97□□□□□ -0.01
SHMT2-212ENST00000554467 PIK3C2AO00443 1686 aa14.96□□□□□ -0.01
SHMT2-212ENST00000554467 PROSER2Q86WR7 435 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-212ENST00000554467 IL16Q14005 1332 aa14.96□□□□□ -0.01
SHMT2-212ENST00000554467 FMN2Q9NZ56 1722 aa14.95□□□□□ -0.02
SHMT2-212ENST00000554467 CENPQQ7L2Z9 268 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-212ENST00000554467 TRIM27P14373 513 aa14.95□□□□□ -0.02
SHMT2-212ENST00000554467 ZKSCAN2Q63HK3 967 aa14.95□□□□□ -0.02
SHMT2-212ENST00000554467 USHBP1Q8N6Y0 703 aa14.95□□□□□ -0.02
SHMT2-212ENST00000554467 KRT24Q2M2I5 525 aa14.95□□□□□ -0.02
SHMT2-212ENST00000554467 MIS18AQ9NYP9 233 aa14.95□□□□□ -0.02
SHMT2-212ENST00000554467 ANKARQ7Z5J8 1434 aa14.95□□□□□ -0.02
SHMT2-212ENST00000554467 EYA1Q99502 592 aa14.94□□□□□ -0.02
SHMT2-212ENST00000554467 PCDHB15Q9Y5E8 787 aa14.94□□□□□ -0.02
SHMT2-212ENST00000554467 DLG5Q8TDM6 1919 aa14.94□□□□□ -0.02
SHMT2-212ENST00000554467 DZIP1LQ8IYY4 767 aaKnown RBP14.94□□□□□ -0.02
SHMT2-212ENST00000554467 C8orf58Q8NAV2 365 aa14.93□□□□□ -0.02
SHMT2-212ENST00000554467 ITPRIPQ8IWB1 547 aa14.93□□□□□ -0.02
SHMT2-212ENST00000554467 FLT4P35916 1363 aa14.93□□□□□ -0.02
SHMT2-212ENST00000554467 EIF5BO60841 1220 aaKnown RBP14.92□□□□□ -0.02
SHMT2-212ENST00000554467 PDE4AP27815 886 aa14.92□□□□□ -0.02
SHMT2-212ENST00000554467 ADGRL3Q9HAR2 1447 aa14.92□□□□□ -0.02
SHMT2-212ENST00000554467 DDX17Q92841 729 aaKnown RBP14.92□□□□□ -0.02
SHMT2-212ENST00000554467 SBNO1A3KN83 1393 aa14.92□□□□□ -0.02
SHMT2-212ENST00000554467 HOXC9P31274 260 aa14.92□□□□□ -0.02
SHMT2-212ENST00000554467 GNAI1P63096 354 aa14.92□□□□□ -0.02
SHMT2-212ENST00000554467 MTHFSDQ2M296 383 aaKnown RBP14.91□□□□□ -0.02
SHMT2-212ENST00000554467 IFT57Q9NWB7 429 aa14.91□□□□□ -0.02
SHMT2-212ENST00000554467 MVPQ14764 893 aaKnown RBP14.91□□□□□ -0.02
SHMT2-212ENST00000554467 ATF7IPQ6VMQ6 1270 aa14.91□□□□□ -0.02
SHMT2-212ENST00000554467 VAMP4O75379 141 aa14.9□□□□□ -0.02
SHMT2-212ENST00000554467 TMEM57Q8N5G2 664 aa14.9□□□□□ -0.02
SHMT2-212ENST00000554467 USP35Q9P2H5 1018 aa14.9□□□□□ -0.02
SHMT2-212ENST00000554467 CFAP44Q96MT7 982 aa14.9□□□□□ -0.02
SHMT2-212ENST00000554467 CT47B1P0C2W7 299 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-212ENST00000554467 ZNF853P0CG23 659 aa14.89□□□□□ -0.03
SHMT2-212ENST00000554467 LMOD3Q0VAK6 560 aa14.89□□□□□ -0.03
SHMT2-212ENST00000554467 TWISTNBQ3B726 338 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-212ENST00000554467 CALD1Q05682 793 aaKnown RBP14.89□□□□□ -0.03
SHMT2-212ENST00000554467 BACH2Q9BYV9 841 aa14.87□□□□□ -0.03
SHMT2-212ENST00000554467 MARF1Q9Y4F3 1742 aaKnown RBP14.86□□□□□ -0.03
SHMT2-212ENST00000554467 LRRC59Q96AG4 307 aaKnown RBP14.86□□□□□ -0.03
SHMT2-212ENST00000554467 IGSF1Q8N6C5 1336 aa14.86□□□□□ -0.03
SHMT2-212ENST00000554467 ARHGEF10O15013 1369 aa14.85□□□□□ -0.03
SHMT2-212ENST00000554467 MRPL50Q8N5N7 158 aaKnown RBP14.85□□□□□ -0.03
SHMT2-212ENST00000554467 KIF16BQ96L93 1317 aa14.85□□□□□ -0.03
SHMT2-212ENST00000554467 RTF1Q92541 710 aaKnown RBP14.85□□□□□ -0.03
SHMT2-212ENST00000554467 RGPD1P0DJD0 1748 aa14.84□□□□□ -0.03
SHMT2-212ENST00000554467 MS4A1P11836 297 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms