RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 LRP6O75581 1613 aa3.91□□□□□ -1.78
PRPF39-206ENST00000554429 C1orf115Q9H7X2 142 aa3.91□□□□□ -1.78
PRPF39-206ENST00000554429 ANO8Q9HCE9 1232 aaPredicted RBP3.91□□□□□ -1.78
PRPF39-206ENST00000554429 KNDC1Q76NI1 1749 aa3.91□□□□□ -1.78
PRPF39-206ENST00000554429 MSH6P52701 1360 aa3.91□□□□□ -1.78
PRPF39-206ENST00000554429 NALCNQ8IZF0 1738 aa3.91□□□□□ -1.78
PRPF39-206ENST00000554429 ASXL1Q8IXJ9 1541 aa3.91□□□□□ -1.78
PRPF39-206ENST00000554429 KIF1BO60333 1816 aa3.9□□□□□ -1.78
PRPF39-206ENST00000554429 HDGFP51858 240 aaKnown RBP3.9□□□□□ -1.78
PRPF39-206ENST00000554429 IDI1Q13907 227 aa3.9□□□□□ -1.78
PRPF39-206ENST00000554429 SUZ12Q15022 739 aaKnown RBP3.9□□□□□ -1.78
PRPF39-206ENST00000554429 KANK4Q5T7N3 995 aaPredicted RBP3.9□□□□□ -1.78
PRPF39-206ENST00000554429 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.9□□□□□ -1.78
PRPF39-206ENST00000554429 BRPF3Q9ULD4 1205 aa3.9□□□□□ -1.78
PRPF39-206ENST00000554429 V9GY48 417 aaPredicted RBP3.9□□□□□ -1.78
PRPF39-206ENST00000554429 ANKRD50Q9ULJ7 1429 aa3.9□□□□□ -1.78
PRPF39-206ENST00000554429 NEXMIFQ5QGS0 1516 aa3.9□□□□□ -1.78
PRPF39-206ENST00000554429 FAM181BA6NEQ2 426 aa3.9□□□□□ -1.79
PRPF39-206ENST00000554429 GOLGA8CPA6NN73 597 aa3.9□□□□□ -1.79
PRPF39-206ENST00000554429 PIP4K2BP78356 416 aa3.9□□□□□ -1.79
PRPF39-206ENST00000554429 CABP2Q9NPB3 220 aa3.9□□□□□ -1.79
PRPF39-206ENST00000554429 IFT172Q9UG01 1749 aa3.9□□□□□ -1.79
PRPF39-206ENST00000554429 PPLO60437 1756 aa3.9□□□□□ -1.79
PRPF39-206ENST00000554429 PTCH1Q13635 1447 aa3.9□□□□□ -1.79
PRPF39-206ENST00000554429 LCE2AQ5TA79 106 aaPredicted RBP3.9□□□□□ -1.79
PRPF39-206ENST00000554429 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.9□□□□□ -1.79
PRPF39-206ENST00000554429 PCDHGA4Q9Y5G9 962 aa3.9□□□□□ -1.79
PRPF39-206ENST00000554429 SOX12O15370 315 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 WIPF1O43516 503 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 ZEB1P37275 1124 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-206ENST00000554429 PPP4R3BQ5MIZ7 849 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 KHSRPQ92945 711 aaKnown RBP eCLIP3.89□□□□□ -1.795e-10■■■□□ 16.6
PRPF39-206ENST00000554429 MST1RQ04912 1400 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 PTPRUQ92729 1446 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 CLTCL1P53675 1640 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 NUDT7P0C024 238 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 KCNC4Q03721 635 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 DMRTA1Q5VZB9 504 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 CDC42BPGQ6DT37 1551 aa3.89□□□□□ -1.79
PRPF39-206ENST00000554429 POTEAQ6S8J7 498 aa3.88□□□□□ -1.79
PRPF39-206ENST00000554429 ZFP91Q96JP5 570 aaPredicted RBP3.88□□□□□ -1.79
PRPF39-206ENST00000554429 ADGRL3Q9HAR2 1447 aa3.88□□□□□ -1.79
PRPF39-206ENST00000554429 KIF1AQ12756 1690 aa3.88□□□□□ -1.79
PRPF39-206ENST00000554429 BRPF1P55201 1214 aaPredicted RBP3.88□□□□□ -1.79
PRPF39-206ENST00000554429 ZNF772Q68DY9 489 aaPredicted RBP3.88□□□□□ -1.79
PRPF39-206ENST00000554429 SLAIN2Q9P270 581 aa3.88□□□□□ -1.79
PRPF39-206ENST00000554429 VPS9D1Q9Y2B5 631 aa3.88□□□□□ -1.79
PRPF39-206ENST00000554429 FOXD4L5Q5VV16 416 aaPredicted RBP3.87□□□□□ -1.79
PRPF39-206ENST00000554429 FOXD4L4Q8WXT5 416 aaPredicted RBP3.87□□□□□ -1.79
PRPF39-206ENST00000554429 LRP5O75197 1615 aa3.87□□□□□ -1.79
PRPF39-206ENST00000554429 NWD2Q9ULI1 1742 aa3.87□□□□□ -1.79
PRPF39-206ENST00000554429 RAD21O60216 631 aa3.87□□□□□ -1.79
PRPF39-206ENST00000554429 CADPS2Q86UW7 1296 aa3.87□□□□□ -1.79
PRPF39-206ENST00000554429 PROSER2Q86WR7 435 aaPredicted RBP3.87□□□□□ -1.79
PRPF39-206ENST00000554429 ZNF592Q92610 1267 aa3.87□□□□□ -1.79
PRPF39-206ENST00000554429 WNT2BQ93097 391 aa3.87□□□□□ -1.79
PRPF39-206ENST00000554429 C19orf44Q9H6X5 657 aa3.87□□□□□ -1.79
PRPF39-206ENST00000554429 RBM25P49756 843 aaKnown RBP3.87□□□□□ -1.79
PRPF39-206ENST00000554429 TMED8Q6PL24 325 aaPredicted RBP3.87□□□□□ -1.79
PRPF39-206ENST00000554429 BCCIPQ9P287 314 aaKnown RBP eCLIP3.87□□□□□ -1.79
PRPF39-206ENST00000554429 TECPR2O15040 1411 aa3.87□□□□□ -1.79
PRPF39-206ENST00000554429 KCTD17Q8N5Z5 321 aa3.86□□□□□ -1.79
PRPF39-206ENST00000554429 ABCA3Q99758 1704 aa3.86□□□□□ -1.79
PRPF39-206ENST00000554429 RRP7BPQ9NSQ0 103 aa3.86□□□□□ -1.79
PRPF39-206ENST00000554429 FMN2Q9NZ56 1722 aa3.86□□□□□ -1.79
PRPF39-206ENST00000554429 ATRNO75882 1429 aa3.86□□□□□ -1.79
PRPF39-206ENST00000554429 BHMG1C9JSJ3 638 aaPredicted RBP3.86□□□□□ -1.79
PRPF39-206ENST00000554429 MTMR7Q9Y216 660 aa3.86□□□□□ -1.79
PRPF39-206ENST00000554429 PNPLA6Q8IY17 1366 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 HFM1A2PYH4 1435 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 BBXQ8WY36 941 aaPredicted RBP3.85□□□□□ -1.79
PRPF39-206ENST00000554429 UPF1Q92900 1129 aaKnown RBP eCLIP3.85□□□□□ -1.79
PRPF39-206ENST00000554429 MYOM2P54296 1465 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 CWC22Q9HCG8 908 aaKnown RBP3.85□□□□□ -1.79
PRPF39-206ENST00000554429 RPGRIP1LQ68CZ1 1315 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 ADGRB2O60241 1585 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 RGS12O14924 1447 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 RRBP1Q9P2E9 1410 aaKnown RBP3.85□□□□□ -1.79
PRPF39-206ENST00000554429 CRYBG1Q9Y4K1 1723 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 C1orf167Q5SNV9 1468 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 PXDNQ92626 1479 aa3.85□□□□□ -1.79
PRPF39-206ENST00000554429 DGAT1O75907 488 aa3.84□□□□□ -1.79
PRPF39-206ENST00000554429 BRINP3Q76B58 766 aa3.84□□□□□ -1.79
PRPF39-206ENST00000554429 NAP1L5Q96NT1 182 aaPredicted RBP3.84□□□□□ -1.79
PRPF39-206ENST00000554429 USP35Q9P2H5 1018 aa3.84□□□□□ -1.79
PRPF39-206ENST00000554429 SOS2Q07890 1332 aaPredicted RBP3.84□□□□□ -1.79
PRPF39-206ENST00000554429 NRAPQ86VF7 1730 aa3.84□□□□□ -1.79
PRPF39-206ENST00000554429 NRXN1Q9ULB1 1477 aa3.84□□□□□ -1.8
PRPF39-206ENST00000554429 ZNF526Q8TF50 670 aaPredicted RBP3.84□□□□□ -1.8
PRPF39-206ENST00000554429 SLC26A8Q96RN1 970 aa3.84□□□□□ -1.8
PRPF39-206ENST00000554429 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.84□□□□□ -1.8
PRPF39-206ENST00000554429 ZMYND15Q9H091 742 aa3.83□□□□□ -1.8
PRPF39-206ENST00000554429 ACIN1Q9UKV3 1341 aaKnown RBP3.83□□□□□ -1.8
PRPF39-206ENST00000554429 DLC1Q96QB1 1528 aa3.83□□□□□ -1.8
PRPF39-206ENST00000554429 PLCH1Q4KWH8 1693 aa3.83□□□□□ -1.8
PRPF39-206ENST00000554429 CENPBP07199 599 aaPredicted RBP3.83□□□□□ -1.8
PRPF39-206ENST00000554429 FNBP4Q8N3X1 1017 aaPredicted RBP3.83□□□□□ -1.8
PRPF39-206ENST00000554429 MRPL50Q8N5N7 158 aaKnown RBP3.83□□□□□ -1.8
PRPF39-206ENST00000554429 LRRC59Q96AG4 307 aaKnown RBP3.83□□□□□ -1.8
PRPF39-206ENST00000554429 SIRT1Q96EB6 747 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms