RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 NFE2L2Q16236 605 aa21.83■■□□□ 1.08
SYNE3-202ENST00000553340 KIF20BQ96Q89 1820 aa21.83■■□□□ 1.08
SYNE3-202ENST00000553340 YTHDC2Q9H6S0 1430 aaKnown RBP21.82■■□□□ 1.08
SYNE3-202ENST00000553340 GAS2L3Q86XJ1 694 aa21.82■■□□□ 1.08
SYNE3-202ENST00000553340 FOXD4L1Q9NU39 408 aa21.82■■□□□ 1.08
SYNE3-202ENST00000553340 CABP1Q9NZU7 370 aa21.82■■□□□ 1.08
SYNE3-202ENST00000553340 GNAI1P63096 354 aa21.81■■□□□ 1.08
SYNE3-202ENST00000553340 CDK19Q9BWU1 502 aa21.81■■□□□ 1.08
SYNE3-202ENST00000553340 REREQ9P2R6 1566 aa21.81■■□□□ 1.08
SYNE3-202ENST00000553340 GOLGA6L22H0YM25 854 aa21.8■■□□□ 1.08
SYNE3-202ENST00000553340 CDC45O75419 566 aa21.8■■□□□ 1.08
SYNE3-202ENST00000553340 ABCC4O15439 1325 aa21.8■■□□□ 1.08
SYNE3-202ENST00000553340 SIRT2Q8IXJ6 389 aa21.8■■□□□ 1.08
SYNE3-202ENST00000553340 IFT57Q9NWB7 429 aa21.8■■□□□ 1.08
SYNE3-202ENST00000553340 POLKQ9UBT6 870 aa21.8■■□□□ 1.08
SYNE3-202ENST00000553340 TSPYL6Q8N831 410 aa21.79■■□□□ 1.08
SYNE3-202ENST00000553340 PHACTR3Q96KR7 559 aa21.79■■□□□ 1.08
SYNE3-202ENST00000553340 RBM42Q9BTD8 480 aaKnown RBP21.79■■□□□ 1.08
SYNE3-202ENST00000553340 THUMPD2Q9BTF0 503 aaKnown RBP21.79■■□□□ 1.08
SYNE3-202ENST00000553340 HMOX1P09601 288 aa21.77■■□□□ 1.08
SYNE3-202ENST00000553340 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.77■■□□□ 1.08
SYNE3-202ENST00000553340 CLEC17AQ6ZS10 378 aa21.77■■□□□ 1.08
SYNE3-202ENST00000553340 GAS2L2Q8NHY3 880 aa21.77■■□□□ 1.08
SYNE3-202ENST00000553340 CFAP44Q96MT7 982 aa21.77■■□□□ 1.08
SYNE3-202ENST00000553340 MYO5BQ9ULV0 1848 aa21.77■■□□□ 1.08
SYNE3-202ENST00000553340 ARHGEF40Q8TER5 1519 aa21.77■■□□□ 1.07
SYNE3-202ENST00000553340 ERBB4Q15303 1308 aa21.77■■□□□ 1.07
SYNE3-202ENST00000553340 SSFA2P28290 1259 aa21.76■■□□□ 1.07
SYNE3-202ENST00000553340 ELL2O00472 640 aaPredicted RBP21.76■■□□□ 1.07
SYNE3-202ENST00000553340 API5Q9BZZ5 524 aaKnown RBP21.76■■□□□ 1.07
SYNE3-202ENST00000553340 MBIPQ9NS73 344 aa21.76■■□□□ 1.07
SYNE3-202ENST00000553340 RAPGEF3O95398 923 aa21.76■■□□□ 1.07
SYNE3-202ENST00000553340 ZNF853P0CG23 659 aa21.76■■□□□ 1.07
SYNE3-202ENST00000553340 TWISTNBQ3B726 338 aaPredicted RBP21.76■■□□□ 1.07
SYNE3-202ENST00000553340 TMEM131LA2VDJ0 1609 aa21.75■■□□□ 1.07
SYNE3-202ENST00000553340 FBLN1P23142 703 aa21.75■■□□□ 1.07
SYNE3-202ENST00000553340 DIP2CQ9Y2E4 1556 aa21.74■■□□□ 1.07
SYNE3-202ENST00000553340 RABEP1Q15276 862 aa21.73■■□□□ 1.07
SYNE3-202ENST00000553340 KLHL40Q2TBA0 621 aa21.73■■□□□ 1.07
SYNE3-202ENST00000553340 LMOD3Q0VAK6 560 aa21.73■■□□□ 1.07
SYNE3-202ENST00000553340 GSPT1P15170 499 aaKnown RBP21.72■■□□□ 1.07
SYNE3-202ENST00000553340 IBTKQ9P2D0 1353 aaPredicted RBP21.72■■□□□ 1.07
SYNE3-202ENST00000553340 BAG4O95429 457 aaKnown RBP21.72■■□□□ 1.07
SYNE3-202ENST00000553340 PLEKHM2Q8IWE5 1019 aa21.72■■□□□ 1.07
SYNE3-202ENST00000553340 DDX49Q9Y6V7 483 aaKnown RBP21.72■■□□□ 1.07
SYNE3-202ENST00000553340 CCDC173Q0VFZ6 552 aa21.71■■□□□ 1.07
SYNE3-202ENST00000553340 ATP7BP35670 1465 aa21.71■■□□□ 1.07
SYNE3-202ENST00000553340 MAP2P11137 1827 aaKnown RBP21.71■■□□□ 1.07
SYNE3-202ENST00000553340 KIF24Q5T7B8 1368 aa21.71■■□□□ 1.07
SYNE3-202ENST00000553340 NEO1Q92859 1461 aa21.71■■□□□ 1.07
SYNE3-202ENST00000553340 ALKQ9UM73 1620 aa21.7■■□□□ 1.06
SYNE3-202ENST00000553340 IL13P35225 146 aa21.7■■□□□ 1.06
SYNE3-202ENST00000553340 ANP32BQ92688 251 aaKnown RBP21.7■■□□□ 1.06
SYNE3-202ENST00000553340 DCTPP1Q9H773 170 aa21.7■■□□□ 1.06
SYNE3-202ENST00000553340 NASPP49321 788 aaPredicted RBP21.7■■□□□ 1.06
SYNE3-202ENST00000553340 C8orf58Q8NAV2 365 aa21.7■■□□□ 1.06
SYNE3-202ENST00000553340 PREX1Q8TCU6 1659 aa21.69■■□□□ 1.06
SYNE3-202ENST00000553340 NUCB2P80303 420 aa21.69■■□□□ 1.06
SYNE3-202ENST00000553340 TTC22Q5TAA0 569 aa21.69■■□□□ 1.06
SYNE3-202ENST00000553340 EMILIN1Q9Y6C2 1016 aa21.69■■□□□ 1.06
SYNE3-202ENST00000553340 PPP1R9BQ96SB3 815 aa21.68■■□□□ 1.06
SYNE3-202ENST00000553340 GLIPR1L2Q4G1C9 344 aa21.68■■□□□ 1.06
SYNE3-202ENST00000553340 RRP9O43818 475 aaKnown RBP21.67■■□□□ 1.06
SYNE3-202ENST00000553340 HSP90AA2PQ14568 343 aaPredicted RBP21.67■■□□□ 1.06
SYNE3-202ENST00000553340 INTS3Q68E01 1043 aaKnown RBP21.66■■□□□ 1.06
SYNE3-202ENST00000553340 CDK12Q9NYV4 1490 aaPredicted RBP21.66■■□□□ 1.06
SYNE3-202ENST00000553340 USP26Q9BXU7 913 aa21.66■■□□□ 1.06
SYNE3-202ENST00000553340 YEATS2Q9ULM3 1422 aa21.66■■□□□ 1.06
SYNE3-202ENST00000553340 RIMS2Q9UQ26 1411 aa21.65■■□□□ 1.06
SYNE3-202ENST00000553340 KNDC1Q76NI1 1749 aa21.64■■□□□ 1.05
SYNE3-202ENST00000553340 MCTP1Q6DN14 999 aa21.63■■□□□ 1.05
SYNE3-202ENST00000553340 CASC1Q6TDU7 716 aa21.63■■□□□ 1.05
SYNE3-202ENST00000553340 ANKRD44Q8N8A2 993 aa21.63■■□□□ 1.05
SYNE3-202ENST00000553340 STAG3Q9UJ98 1225 aa21.63■■□□□ 1.05
SYNE3-202ENST00000553340 DLG5Q8TDM6 1919 aa21.63■■□□□ 1.05
SYNE3-202ENST00000553340 EDC4Q6P2E9 1401 aaKnown RBP21.63■■□□□ 1.05
SYNE3-202ENST00000553340 ZNF445P59923 1031 aa21.62■■□□□ 1.05
SYNE3-202ENST00000553340 WAPLQ7Z5K2 1190 aa21.62■■□□□ 1.05
SYNE3-202ENST00000553340 AK9Q5TCS8 1911 aa21.62■■□□□ 1.05
SYNE3-202ENST00000553340 FAM83GA6ND36 823 aa21.62■■□□□ 1.05
SYNE3-202ENST00000553340 RPAP2Q8IXW5 612 aaPredicted RBP21.62■■□□□ 1.05
SYNE3-202ENST00000553340 C16orf71Q8IYS4 520 aaPredicted RBP21.62■■□□□ 1.05
SYNE3-202ENST00000553340 CWC22Q9HCG8 908 aaKnown RBP21.62■■□□□ 1.05
SYNE3-202ENST00000553340 AATKQ6ZMQ8 1374 aa21.62■■□□□ 1.05
SYNE3-202ENST00000553340 DLC1Q96QB1 1528 aa21.62■■□□□ 1.05
SYNE3-202ENST00000553340 CYP2E1P05181 493 aaPredicted RBP21.61■■□□□ 1.05
SYNE3-202ENST00000553340 HAP1P54257 671 aaPredicted RBP21.61■■□□□ 1.05
SYNE3-202ENST00000553340 ZSCAN30Q86W11 494 aa21.61■■□□□ 1.05
SYNE3-202ENST00000553340 NME9Q86XW9 330 aa21.61■■□□□ 1.05
SYNE3-202ENST00000553340 ST18O60284 1047 aa21.6■■□□□ 1.05
SYNE3-202ENST00000553340 TPM2P07951 284 aa21.6■■□□□ 1.05
SYNE3-202ENST00000553340 NCLP19338 710 aaKnown RBP21.59■■□□□ 1.05
SYNE3-202ENST00000553340 FBXO31Q5XUX0 539 aaPredicted RBP21.59■■□□□ 1.05
SYNE3-202ENST00000553340 CPSF1Q10570 1443 aaKnown RBP21.59■■□□□ 1.05
SYNE3-202ENST00000553340 LMBRD1Q9NUN5 540 aa21.59■■□□□ 1.05
SYNE3-202ENST00000553340 ATP10DQ9P241 1426 aa21.59■■□□□ 1.05
SYNE3-202ENST00000553340 SDSP20132 328 aa21.59■■□□□ 1.05
SYNE3-202ENST00000553340 DCTN1Q14203 1278 aa21.59■■□□□ 1.05
SYNE3-202ENST00000553340 CAVIN1Q6NZI2 390 aaKnown RBP21.59■■□□□ 1.05
SYNE3-202ENST00000553340 COG3Q96JB2 828 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 1573.9 ms