RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.29■□□□□ 0.523e-7■■■□□ 18.3
CUX1-214ENST00000550008 MPRIPQ6WCQ1 1025 aa18.29■□□□□ 0.52
CUX1-214ENST00000550008 BRPF3Q9ULD4 1205 aa18.29■□□□□ 0.52
CUX1-214ENST00000550008 SRGAP3O43295 1099 aa18.28■□□□□ 0.52
CUX1-214ENST00000550008 FOSBP53539 338 aa18.28■□□□□ 0.52
CUX1-214ENST00000550008 TSPYL6Q8N831 410 aa18.28■□□□□ 0.52
CUX1-214ENST00000550008 RUFY2Q8WXA3 655 aa18.28■□□□□ 0.52
CUX1-214ENST00000550008 GCC2Q8IWJ2 1684 aa18.28■□□□□ 0.52
CUX1-214ENST00000550008 VPS37CA5D8V6 355 aaPredicted RBP18.28■□□□□ 0.52
CUX1-214ENST00000550008 ANXA1P04083 346 aa18.28■□□□□ 0.52
CUX1-214ENST00000550008 PTMSP20962 102 aa18.28■□□□□ 0.52
CUX1-214ENST00000550008 CCT4P50991 539 aaKnown RBP18.28■□□□□ 0.52
CUX1-214ENST00000550008 BTBD11A6QL63 1104 aa18.27■□□□□ 0.52
CUX1-214ENST00000550008 SYAP1Q96A49 352 aaPredicted RBP18.27■□□□□ 0.52
CUX1-214ENST00000550008 POGZQ7Z3K3 1410 aa18.27■□□□□ 0.51
CUX1-214ENST00000550008 ABCC11Q96J66 1382 aa18.27■□□□□ 0.51
CUX1-214ENST00000550008 C8orf58Q8NAV2 365 aa18.26■□□□□ 0.51
CUX1-214ENST00000550008 LRRCC1Q9C099 1032 aa18.26■□□□□ 0.51
CUX1-214ENST00000550008 TATP17735 454 aaPredicted RBP18.26■□□□□ 0.51
CUX1-214ENST00000550008 ALDH1L2Q3SY69 923 aa18.25■□□□□ 0.51
CUX1-214ENST00000550008 HSP90AB4PQ58FF6 505 aa18.25■□□□□ 0.51
CUX1-214ENST00000550008 TNRQ92752 1358 aa18.25■□□□□ 0.51
CUX1-214ENST00000550008 TOM1L2Q6ZVM7 507 aa18.25■□□□□ 0.51
CUX1-214ENST00000550008 POLR3AO14802 1390 aaPredicted RBP18.25■□□□□ 0.51
CUX1-214ENST00000550008 TRAK2O60296 914 aa18.25■□□□□ 0.51
CUX1-214ENST00000550008 TSHZ3Q63HK5 1081 aa18.25■□□□□ 0.51
CUX1-214ENST00000550008 NUTM1Q86Y26 1132 aa18.25■□□□□ 0.51
CUX1-214ENST00000550008 ATP7AQ04656 1500 aa18.24■□□□□ 0.51
CUX1-214ENST00000550008 NSD2O96028 1365 aa18.24■□□□□ 0.51
CUX1-214ENST00000550008 ABCA8O94911 1581 aa18.24■□□□□ 0.51
CUX1-214ENST00000550008 PRDM11Q9NQV5 511 aa18.24■□□□□ 0.51
CUX1-214ENST00000550008 TTC21BQ7Z4L5 1316 aa18.24■□□□□ 0.51
CUX1-214ENST00000550008 ERC2O15083 957 aa18.24■□□□□ 0.51
CUX1-214ENST00000550008 FSD1Q9BTV5 496 aa18.24■□□□□ 0.51
CUX1-214ENST00000550008 RBM42Q9BTD8 480 aaKnown RBP18.23■□□□□ 0.51
CUX1-214ENST00000550008 RIMS2Q9UQ26 1411 aa18.23■□□□□ 0.51
CUX1-214ENST00000550008 H3BQV1 296 aa18.23■□□□□ 0.51
CUX1-214ENST00000550008 APPP05067 770 aa18.23■□□□□ 0.51
CUX1-214ENST00000550008 IFFO2Q5TF58 517 aa18.23■□□□□ 0.51
CUX1-214ENST00000550008 FAM184AQ8NB25 1140 aa18.23■□□□□ 0.51
CUX1-214ENST00000550008 DNAJC2Q99543 621 aaKnown RBP18.23■□□□□ 0.51
CUX1-214ENST00000550008 IL27Q8NEV9 243 aa18.23■□□□□ 0.51
CUX1-214ENST00000550008 PPIP5K1Q6PFW1 1433 aa18.22■□□□□ 0.51
CUX1-214ENST00000550008 RPAP2Q8IXW5 612 aaPredicted RBP18.22■□□□□ 0.51
CUX1-214ENST00000550008 EIF4A2Q14240 407 aaKnown RBP18.22■□□□□ 0.51
CUX1-214ENST00000550008 UHRF1BP1LA0JNW5 1464 aa18.21■□□□□ 0.51
CUX1-214ENST00000550008 CCDC85AQ96PX6 553 aaPredicted RBP18.21■□□□□ 0.51
CUX1-214ENST00000550008 MAST1Q9Y2H9 1570 aa18.21■□□□□ 0.51
CUX1-214ENST00000550008 SMC3Q9UQE7 1217 aa18.21■□□□□ 0.51
CUX1-214ENST00000550008 ERCC6L2Q5T890 1561 aa18.21■□□□□ 0.51
CUX1-214ENST00000550008 PTCD1O75127 700 aaKnown RBP18.21■□□□□ 0.5
CUX1-214ENST00000550008 CCDC27Q2M243 656 aa18.21■□□□□ 0.5
CUX1-214ENST00000550008 SAMD9LQ8IVG5 1584 aa18.2■□□□□ 0.5
CUX1-214ENST00000550008 PIK3C2GO75747 1445 aa18.2■□□□□ 0.5
CUX1-214ENST00000550008 TAF7Q15545 349 aaPredicted RBP18.2■□□□□ 0.5
CUX1-214ENST00000550008 CNTROBQ8N137 903 aa18.2■□□□□ 0.5
CUX1-214ENST00000550008 CABP4P57796 275 aa18.2■□□□□ 0.5
CUX1-214ENST00000550008 NUCB2P80303 420 aa18.2■□□□□ 0.5
CUX1-214ENST00000550008 RNF214Q8ND24 703 aa18.2■□□□□ 0.5
CUX1-214ENST00000550008 UGGT1Q9NYU2 1555 aa18.19■□□□□ 0.5
CUX1-214ENST00000550008 SKOR2Q2VWA4 1001 aaPredicted RBP18.19■□□□□ 0.5
CUX1-214ENST00000550008 TBC1D2Q9BYX2 928 aa18.19■□□□□ 0.5
CUX1-214ENST00000550008 UPF3BQ9BZI7 483 aaKnown RBP18.19■□□□□ 0.5
CUX1-214ENST00000550008 MEIS3Q99687 375 aa18.19■□□□□ 0.5
CUX1-214ENST00000550008 PPP6R1Q9UPN7 881 aa18.19■□□□□ 0.5
CUX1-214ENST00000550008 SF3A1Q15459 793 aaKnown RBP18.19■□□□□ 0.5
CUX1-214ENST00000550008 LRRFIP2Q9Y608 721 aaKnown RBP18.19■□□□□ 0.5
CUX1-214ENST00000550008 RABEP1Q15276 862 aa18.18■□□□□ 0.5
CUX1-214ENST00000550008 EIF2AK4Q9P2K8 1649 aaKnown RBP18.18■□□□□ 0.5
CUX1-214ENST00000550008 NPATQ14207 1427 aa18.18■□□□□ 0.5
CUX1-214ENST00000550008 FLIIQ13045 1269 aa18.18■□□□□ 0.5
CUX1-214ENST00000550008 YTHDC2Q9H6S0 1430 aaKnown RBP18.17■□□□□ 0.5
CUX1-214ENST00000550008 SEC24BO95487 1268 aa18.17■□□□□ 0.5
CUX1-214ENST00000550008 WASHC4Q2M389 1173 aa18.17■□□□□ 0.5
CUX1-214ENST00000550008 CAVIN1Q6NZI2 390 aaKnown RBP18.17■□□□□ 0.5
CUX1-214ENST00000550008 CWC27Q6UX04 472 aaKnown RBP18.17■□□□□ 0.5
CUX1-214ENST00000550008 MAGI2Q86UL8 1455 aa18.17■□□□□ 0.5
CUX1-214ENST00000550008 TTC37Q6PGP7 1564 aa18.17■□□□□ 0.5
CUX1-214ENST00000550008 PLA2R1Q13018 1463 aa18.17■□□□□ 0.5
CUX1-214ENST00000550008 KDM4AO75164 1064 aa18.17■□□□□ 0.5
CUX1-214ENST00000550008 PRPF40AO75400 957 aaKnown RBP18.17■□□□□ 0.5
CUX1-214ENST00000550008 KIAA2012Q0VF49 1180 aa18.17■□□□□ 0.5
CUX1-214ENST00000550008 CHRNA2Q15822 529 aa18.17■□□□□ 0.5
CUX1-214ENST00000550008 C8orf34Q49A92 452 aa18.16■□□□□ 0.5
CUX1-214ENST00000550008 K7ELQ4 463 aaPredicted RBP18.16■□□□□ 0.5
CUX1-214ENST00000550008 ZMYM3Q14202 1370 aa18.16■□□□□ 0.5
CUX1-214ENST00000550008 RNF20Q5VTR2 975 aa18.16■□□□□ 0.5
CUX1-214ENST00000550008 AACSQ86V21 672 aa18.16■□□□□ 0.5
CUX1-214ENST00000550008 ANO8Q9HCE9 1232 aaPredicted RBP18.16■□□□□ 0.5
CUX1-214ENST00000550008 ATP10AO60312 1499 aa18.15■□□□□ 0.5
CUX1-214ENST00000550008 HTATSF1O43719 755 aaKnown RBP18.15■□□□□ 0.5
CUX1-214ENST00000550008 KCNH5Q8NCM2 988 aa18.15■□□□□ 0.5
CUX1-214ENST00000550008 KCNA6P17658 529 aa18.15■□□□□ 0.5
CUX1-214ENST00000550008 VAMP4O75379 141 aa18.14■□□□□ 0.5
CUX1-214ENST00000550008 YEATS2Q9ULM3 1422 aa18.14■□□□□ 0.49
CUX1-214ENST00000550008 JARID2Q92833 1246 aaPredicted RBP18.14■□□□□ 0.49
CUX1-214ENST00000550008 PTPRTO14522 1441 aa18.14■□□□□ 0.49
CUX1-214ENST00000550008 C16orf71Q8IYS4 520 aaPredicted RBP18.14■□□□□ 0.49
CUX1-214ENST00000550008 ATP6V1DQ9Y5K8 247 aa18.14■□□□□ 0.49
CUX1-214ENST00000550008 MTHFSDQ2M296 383 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms