RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 TBC1D2BQ9UPU7 963 aa6.55□□□□□ -1.36
USP28-210ENST00000542033 FSHRP23945 695 aa6.54□□□□□ -1.36
USP28-210ENST00000542033 ABL2P42684 1182 aa6.54□□□□□ -1.36
USP28-210ENST00000542033 DHX9Q08211 1270 aaKnown RBP6.54□□□□□ -1.36
USP28-210ENST00000542033 HPS1Q92902 700 aa6.54□□□□□ -1.36
USP28-210ENST00000542033 KCTD15Q96SI1 283 aaPredicted RBP6.54□□□□□ -1.36
USP28-210ENST00000542033 OCSTAMPQ9BR26 566 aa6.54□□□□□ -1.36
USP28-210ENST00000542033 COG6Q9Y2V7 657 aa6.54□□□□□ -1.36
USP28-210ENST00000542033 WASHC4Q2M389 1173 aa6.53□□□□□ -1.36
USP28-210ENST00000542033 POM121Q96HA1 1249 aa6.53□□□□□ -1.36
USP28-210ENST00000542033 PCDHB9Q9Y5E1 797 aa6.53□□□□□ -1.36
USP28-210ENST00000542033 GRM5P41594 1212 aa6.52□□□□□ -1.37
USP28-210ENST00000542033 WDR4P57081 412 aaKnown RBP6.52□□□□□ -1.37
USP28-210ENST00000542033 EIF4G2P78344 907 aaKnown RBP eCLIP6.52□□□□□ -1.37
USP28-210ENST00000542033 CCDC125Q86Z20 511 aa6.52□□□□□ -1.37
USP28-210ENST00000542033 CCDC116Q8IYX3 515 aa6.52□□□□□ -1.37
USP28-210ENST00000542033 CLUAP1Q96AJ1 413 aa6.52□□□□□ -1.37
USP28-210ENST00000542033 AAASQ9NRG9 546 aa6.52□□□□□ -1.37
USP28-210ENST00000542033 EMILIN1Q9Y6C2 1016 aa6.52□□□□□ -1.37
USP28-210ENST00000542033 CAPN5O15484 640 aaPredicted RBP6.51□□□□□ -1.37
USP28-210ENST00000542033 GPR37L1O60883 481 aa6.51□□□□□ -1.37
USP28-210ENST00000542033 SEPT12Q8IYM1 358 aa6.51□□□□□ -1.37
USP28-210ENST00000542033 PGPEP1Q9NXJ5 209 aa6.51□□□□□ -1.37
USP28-210ENST00000542033 A6NJR5 290 aa6.5□□□□□ -1.37
USP28-210ENST00000542033 ST8SIA5O15466 376 aa6.5□□□□□ -1.37
USP28-210ENST00000542033 RNF20Q5VTR2 975 aa6.5□□□□□ -1.37
USP28-210ENST00000542033 PROSER2Q86WR7 435 aaPredicted RBP6.5□□□□□ -1.37
USP28-210ENST00000542033 ZMYND15Q9H091 742 aa6.5□□□□□ -1.37
USP28-210ENST00000542033 ZIC2O95409 532 aaPredicted RBP6.49□□□□□ -1.37
USP28-210ENST00000542033 NR3C2P08235 984 aa6.49□□□□□ -1.37
USP28-210ENST00000542033 TIMP2P16035 220 aa6.49□□□□□ -1.37
USP28-210ENST00000542033 SOX11P35716 441 aa6.49□□□□□ -1.37
USP28-210ENST00000542033 INTS6LQ5JSJ4 861 aaKnown RBP6.49□□□□□ -1.37
USP28-210ENST00000542033 ZNF775Q96BV0 537 aaPredicted RBP6.49□□□□□ -1.37
USP28-210ENST00000542033 IRF5Q13568 498 aa6.48□□□□□ -1.37
USP28-210ENST00000542033 PPP1R26Q5T8A7 1209 aaPredicted RBP6.48□□□□□ -1.37
USP28-210ENST00000542033 ESPNB1AK53 854 aa6.47□□□□□ -1.37
USP28-210ENST00000542033 UPP2O95045 317 aa6.47□□□□□ -1.37
USP28-210ENST00000542033 RAB15P59190 212 aa6.47□□□□□ -1.37
USP28-210ENST00000542033 ITPKCQ96DU7 683 aa6.47□□□□□ -1.37
USP28-210ENST00000542033 KLF16Q9BXK1 252 aaPredicted RBP6.47□□□□□ -1.37
USP28-210ENST00000542033 SENP2Q9HC62 589 aa6.47□□□□□ -1.37
USP28-210ENST00000542033 ATP13A2Q9NQ11 1180 aa6.47□□□□□ -1.37
USP28-210ENST00000542033 TIMELESSQ9UNS1 1208 aa6.47□□□□□ -1.37
USP28-210ENST00000542033 VAC14Q08AM6 782 aa6.46□□□□□ -1.38
USP28-210ENST00000542033 SCARF1Q14162 830 aa6.46□□□□□ -1.38
USP28-210ENST00000542033 KIFC2Q96AC6 838 aa6.46□□□□□ -1.38
USP28-210ENST00000542033 ZFAND3Q9H8U3 227 aa6.46□□□□□ -1.38
USP28-210ENST00000542033 GIGYF1O75420 1035 aaPredicted RBP6.45□□□□□ -1.38
USP28-210ENST00000542033 SEMA3FQ13275 785 aa6.45□□□□□ -1.38
USP28-210ENST00000542033 ERVH48-1M5A8F1 160 aa6.44□□□□□ -1.38
USP28-210ENST00000542033 TRAK2O60296 914 aa6.44□□□□□ -1.38
USP28-210ENST00000542033 MRPL14Q6P1L8 145 aaKnown RBP6.44□□□□□ -1.38
USP28-210ENST00000542033 FNBP4Q8N3X1 1017 aaPredicted RBP6.44□□□□□ -1.38
USP28-210ENST00000542033 MEIOBQ8N635 442 aa6.44□□□□□ -1.38
USP28-210ENST00000542033 ESF1Q9H501 851 aaKnown RBP6.44□□□□□ -1.38
USP28-210ENST00000542033 CEP126Q9P2H0 1117 aa6.44□□□□□ -1.38
USP28-210ENST00000542033 DACH1Q9UI36 760 aa6.44□□□□□ -1.38
USP28-210ENST00000542033 SLFNL1Q499Z3 407 aa6.43□□□□□ -1.38
USP28-210ENST00000542033 TSEN34Q9BSV6 310 aaKnown RBP6.43□□□□□ -1.38
USP28-210ENST00000542033 C11orf95C9JLR9 678 aaPredicted RBP6.42□□□□□ -1.38
USP28-210ENST00000542033 BMP1P13497 986 aa6.42□□□□□ -1.38
USP28-210ENST00000542033 Q6ZVU0 165 aa6.42□□□□□ -1.38
USP28-210ENST00000542033 LINC00528Q8N1L1 170 aa6.42□□□□□ -1.38
USP28-210ENST00000542033 ZNF784Q8NCA9 323 aaPredicted RBP6.42□□□□□ -1.38
USP28-210ENST00000542033 TMPRSS4Q9NRS4 437 aa6.42□□□□□ -1.38
USP28-210ENST00000542033 GMPR2Q9P2T1 348 aaKnown RBP6.42□□□□□ -1.38
USP28-210ENST00000542033 BMP2P12643 396 aa6.41□□□□□ -1.38
USP28-210ENST00000542033 TRIM46Q7Z4K8 759 aa6.41□□□□□ -1.38
USP28-210ENST00000542033 RNF135Q8IUD6 432 aa6.41□□□□□ -1.38
USP28-210ENST00000542033 TRIM47Q96LD4 638 aa6.41□□□□□ -1.38
USP28-210ENST00000542033 ZNF777Q9ULD5 760 aaPredicted RBP6.41□□□□□ -1.38
USP28-210ENST00000542033 PCDHB11Q9Y5F2 797 aa6.41□□□□□ -1.38
USP28-210ENST00000542033 POM121CA8CG34 1229 aa6.4□□□□□ -1.38
USP28-210ENST00000542033 MYCP01106 439 aaPredicted RBP6.4□□□□□ -1.38
USP28-210ENST00000542033 ADH1AP07327 375 aa6.4□□□□□ -1.38
USP28-210ENST00000542033 CBLBQ13191 982 aa6.4□□□□□ -1.38
USP28-210ENST00000542033 C6orf118Q5T5N4 469 aa6.4□□□□□ -1.38
USP28-210ENST00000542033 CC2D2BQ6DHV5 1058 aa6.4□□□□□ -1.38
USP28-210ENST00000542033 ZFP42Q96MM3 310 aa6.4□□□□□ -1.38
USP28-210ENST00000542033 PURBQ96QR8 312 aaKnown RBP6.4□□□□□ -1.38
USP28-210ENST00000542033 CYLDQ9NQC7 956 aa6.4□□□□□ -1.38
USP28-210ENST00000542033 ERVK-9P63128 1117 aa6.39□□□□□ -1.39
USP28-210ENST00000542033 HDGFL1Q5TGJ6 251 aa6.39□□□□□ -1.39
USP28-210ENST00000542033 SIRT1Q96EB6 747 aa6.39□□□□□ -1.39
USP28-210ENST00000542033 CALR3Q96L12 384 aaKnown RBP6.39□□□□□ -1.39
USP28-210ENST00000542033 DOLKQ9UPQ8 538 aa6.39□□□□□ -1.39
USP28-210ENST00000542033 LILRA1O75019 489 aa6.38□□□□□ -1.39
USP28-210ENST00000542033 MAP7D1Q3KQU3 841 aa6.38□□□□□ -1.39
USP28-210ENST00000542033 CYP2U1Q7Z449 544 aa6.38□□□□□ -1.39
USP28-210ENST00000542033 GLMNQ92990 594 aa6.38□□□□□ -1.39
USP28-210ENST00000542033 ALG2Q9H553 416 aa6.38□□□□□ -1.39
USP28-210ENST00000542033 POTECB2RU33 542 aa6.37□□□□□ -1.39
USP28-210ENST00000542033 ATP5J2-PTCD1G3V325 749 aa6.37□□□□□ -1.39
USP28-210ENST00000542033 USP4Q13107 963 aa6.37□□□□□ -1.39
USP28-210ENST00000542033 PHTF2Q8N3S3 785 aa6.37□□□□□ -1.39
USP28-210ENST00000542033 SPINT1O43278 529 aa6.36□□□□□ -1.39
USP28-210ENST00000542033 PTGIRP43119 386 aa6.36□□□□□ -1.39
USP28-210ENST00000542033 RELBQ01201 579 aa6.36□□□□□ -1.39
USP28-210ENST00000542033 PLPP7Q8NBV4 271 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms