RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 CEP350Q5VT06 3117 aa17.76■□□□□ 0.43
YBX3-207ENST00000539204 USP19O94966 1318 aa17.75■□□□□ 0.43
YBX3-207ENST00000539204 CDCA7Q9BWT1 371 aaPredicted RBP17.75■□□□□ 0.43
YBX3-207ENST00000539204 COL5A2P05997 1499 aaPredicted RBP17.75■□□□□ 0.43
YBX3-207ENST00000539204 PEAK1Q9H792 1746 aa17.73■□□□□ 0.43
YBX3-207ENST00000539204 DCAF11Q8TEB1 546 aa17.73■□□□□ 0.43
YBX3-207ENST00000539204 LMO7Q8WWI1 1683 aa17.73■□□□□ 0.43
YBX3-207ENST00000539204 SBF2Q86WG5 1849 aa17.72■□□□□ 0.43
YBX3-207ENST00000539204 EXOC5O00471 708 aa17.71■□□□□ 0.43
YBX3-207ENST00000539204 STAC3Q96MF2 364 aa17.71■□□□□ 0.43
YBX3-207ENST00000539204 ITSN1Q15811 1721 aa17.71■□□□□ 0.43
YBX3-207ENST00000539204 BCL9O00512 1426 aa17.71■□□□□ 0.43
YBX3-207ENST00000539204 AATKQ6ZMQ8 1374 aa17.7■□□□□ 0.42
YBX3-207ENST00000539204 MAP3K5Q99683 1374 aa17.7■□□□□ 0.42
YBX3-207ENST00000539204 NLRP6P59044 892 aa17.69■□□□□ 0.42
YBX3-207ENST00000539204 PELP1Q8IZL8 1130 aaKnown RBP17.69■□□□□ 0.42
YBX3-207ENST00000539204 AXIN2Q9Y2T1 843 aa17.67■□□□□ 0.42
YBX3-207ENST00000539204 WDR17Q8IZU2 1322 aa17.67■□□□□ 0.42
YBX3-207ENST00000539204 GOLGB1Q14789 3259 aaKnown RBP17.67■□□□□ 0.42
YBX3-207ENST00000539204 KLHL34Q8N239 644 aa17.66■□□□□ 0.42
YBX3-207ENST00000539204 LRRC37A3O60309 1634 aa17.65■□□□□ 0.42
YBX3-207ENST00000539204 CSB-PGBD3P0DP91 1061 aa17.65■□□□□ 0.42
YBX3-207ENST00000539204 CARD10Q9BWT7 1032 aa17.65■□□□□ 0.42
YBX3-207ENST00000539204 POLD1P28340 1107 aa17.64■□□□□ 0.41
YBX3-207ENST00000539204 SRPK2P78362 688 aaKnown RBP17.64■□□□□ 0.41
YBX3-207ENST00000539204 BRD4O60885 1362 aaPredicted RBP17.64■□□□□ 0.41
YBX3-207ENST00000539204 SLC16A10Q8TF71 515 aa17.63■□□□□ 0.41
YBX3-207ENST00000539204 ACSBG1Q96GR2 724 aa17.62■□□□□ 0.41
YBX3-207ENST00000539204 GRIN3BO60391 1043 aa17.61■□□□□ 0.41
YBX3-207ENST00000539204 PPIP5K1Q6PFW1 1433 aa17.6■□□□□ 0.41
YBX3-207ENST00000539204 ZNF827Q17R98 1081 aa17.59■□□□□ 0.41
YBX3-207ENST00000539204 CABP2Q9NPB3 220 aa17.59■□□□□ 0.41
YBX3-207ENST00000539204 CABP1Q9NZU7 370 aa17.59■□□□□ 0.41
YBX3-207ENST00000539204 ARHGEF25Q86VW2 580 aa17.58■□□□□ 0.4
YBX3-207ENST00000539204 KCNH5Q8NCM2 988 aa17.58■□□□□ 0.4
YBX3-207ENST00000539204 ARHGEF28Q8N1W1 1705 aaKnown RBP17.58■□□□□ 0.4
YBX3-207ENST00000539204 TOPAZ1Q8N9V7 1692 aa17.58■□□□□ 0.4
YBX3-207ENST00000539204 AKAP12Q02952 1782 aa17.56■□□□□ 0.4
YBX3-207ENST00000539204 NLGN2Q8NFZ4 835 aa17.56■□□□□ 0.4
YBX3-207ENST00000539204 LRRC4BQ9NT99 713 aa17.56■□□□□ 0.4
YBX3-207ENST00000539204 CCDC7Q96M83 1385 aa17.55■□□□□ 0.4
YBX3-207ENST00000539204 HSPA6P17066 643 aa17.55■□□□□ 0.4
YBX3-207ENST00000539204 AKT1S1Q96B36 256 aa17.55■□□□□ 0.4
YBX3-207ENST00000539204 GPBP1L1Q9HC44 474 aaPredicted RBP17.55■□□□□ 0.4
YBX3-207ENST00000539204 SOX12O15370 315 aa17.54■□□□□ 0.4
YBX3-207ENST00000539204 USP6P35125 1406 aa17.54■□□□□ 0.4
YBX3-207ENST00000539204 SLIT3O75094 1523 aa17.53■□□□□ 0.4
YBX3-207ENST00000539204 YBX3P16989 372 aaKnown RBP eCLIP17.53■□□□□ 0.41e-7■■□□□ 14.3
YBX3-207ENST00000539204 SLC27A3Q5K4L6 730 aa17.53■□□□□ 0.4
YBX3-207ENST00000539204 TFCP2L1Q9NZI6 479 aa17.53■□□□□ 0.4
YBX3-207ENST00000539204 CPSF1Q10570 1443 aaKnown RBP17.53■□□□□ 0.4
YBX3-207ENST00000539204 COL18A1P39060 1754 aa17.53■□□□□ 0.4
YBX3-207ENST00000539204 SHANK3Q9BYB0 1731 aa17.52■□□□□ 0.4
YBX3-207ENST00000539204 ZNF692Q9BU19 519 aaPredicted RBP17.51■□□□□ 0.39
YBX3-207ENST00000539204 PNPLA7Q6ZV29 1317 aa17.5■□□□□ 0.39
YBX3-207ENST00000539204 TNS2Q63HR2 1409 aa17.5■□□□□ 0.39
YBX3-207ENST00000539204 ATP10DQ9P241 1426 aa17.5■□□□□ 0.39
YBX3-207ENST00000539204 CENPJQ9HC77 1338 aaPredicted RBP17.49■□□□□ 0.39
YBX3-207ENST00000539204 IL2RBP14784 551 aa17.49■□□□□ 0.39
YBX3-207ENST00000539204 NLRP2Q9NX02 1062 aa17.49■□□□□ 0.39
YBX3-207ENST00000539204 WNK3Q9BYP7 1800 aa17.49■□□□□ 0.39
YBX3-207ENST00000539204 KAT6BQ8WYB5 2073 aa17.48■□□□□ 0.39
YBX3-207ENST00000539204 PAPPAQ13219 1627 aa17.48■□□□□ 0.39
YBX3-207ENST00000539204 NBPF1Q3BBV0 1214 aa17.48■□□□□ 0.39
YBX3-207ENST00000539204 NHSQ6T4R5 1651 aa17.48■□□□□ 0.39
YBX3-207ENST00000539204 TTC21BQ7Z4L5 1316 aa17.47■□□□□ 0.39
YBX3-207ENST00000539204 ZNF526Q8TF50 670 aaPredicted RBP17.46■□□□□ 0.39
YBX3-207ENST00000539204 MSH5O43196 834 aa17.45■□□□□ 0.38
YBX3-207ENST00000539204 RGPD5Q99666 1765 aa17.44■□□□□ 0.38
YBX3-207ENST00000539204 KCNQ4P56696 695 aa17.44■□□□□ 0.38
YBX3-207ENST00000539204 RAB3GAP2Q9H2M9 1393 aa17.43■□□□□ 0.38
YBX3-207ENST00000539204 DDX54Q8TDD1 881 aaKnown RBP17.43■□□□□ 0.38
YBX3-207ENST00000539204 TTC21AQ8NDW8 1320 aa17.43■□□□□ 0.38
YBX3-207ENST00000539204 TRPM1Q7Z4N2 1603 aa17.43■□□□□ 0.38
YBX3-207ENST00000539204 BTAF1O14981 1849 aa17.42■□□□□ 0.38
YBX3-207ENST00000539204 SYTL4Q96C24 671 aaPredicted RBP17.42■□□□□ 0.38
YBX3-207ENST00000539204 ERBB3P21860 1342 aa17.42■□□□□ 0.38
YBX3-207ENST00000539204 PIK3C2AO00443 1686 aa17.42■□□□□ 0.38
YBX3-207ENST00000539204 ABCC6O95255 1503 aa17.42■□□□□ 0.38
YBX3-207ENST00000539204 CD2APQ9Y5K6 639 aa17.41■□□□□ 0.38
YBX3-207ENST00000539204 EVC2Q86UK5 1308 aa17.41■□□□□ 0.38
YBX3-207ENST00000539204 COL23A1Q86Y22 540 aaPredicted RBP17.4■□□□□ 0.38
YBX3-207ENST00000539204 COL24A1Q17RW2 1714 aa17.39■□□□□ 0.37
YBX3-207ENST00000539204 PRIM1P49642 420 aaKnown RBP17.39■□□□□ 0.37
YBX3-207ENST00000539204 APLP1P51693 650 aa17.39■□□□□ 0.37
YBX3-207ENST00000539204 ANKRD24Q8TF21 1146 aa17.39■□□□□ 0.37
YBX3-207ENST00000539204 QSER1Q2KHR3 1735 aa17.38■□□□□ 0.37
YBX3-207ENST00000539204 MSL1Q68DK7 614 aa17.37■□□□□ 0.37
YBX3-207ENST00000539204 CCNL1Q9UK58 526 aaPredicted RBP17.37■□□□□ 0.37
YBX3-207ENST00000539204 ADCY9O60503 1353 aa17.37■□□□□ 0.37
YBX3-207ENST00000539204 KIAA1210Q9ULL0 1709 aa17.35■□□□□ 0.37
YBX3-207ENST00000539204 KIF3CO14782 793 aa17.35■□□□□ 0.37
YBX3-207ENST00000539204 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.35■□□□□ 0.37
YBX3-207ENST00000539204 DNAJC5GQ8N7S2 189 aa17.35■□□□□ 0.37
YBX3-207ENST00000539204 KTN1Q86UP2 1357 aaKnown RBP17.35■□□□□ 0.37
YBX3-207ENST00000539204 NFAT5O94916 1531 aa17.35■□□□□ 0.37
YBX3-207ENST00000539204 QRICH2Q9H0J4 1663 aa17.34■□□□□ 0.37
YBX3-207ENST00000539204 HMGB2P26583 209 aaKnown RBP17.33■□□□□ 0.36
YBX3-207ENST00000539204 FLAD1Q8NFF5 587 aa17.33■□□□□ 0.36
YBX3-207ENST00000539204 ANKRD36BQ8N2N9 1353 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms