RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 PANK1Q8TE04 598 aa26.58■■□□□ 1.85
SMPDL3A-203ENST00000539041 CALD1Q05682 793 aaKnown RBP26.58■■□□□ 1.85
SMPDL3A-203ENST00000539041 BCL2L13Q9BXK5 485 aa26.57■■□□□ 1.84
SMPDL3A-203ENST00000539041 LMOD3Q0VAK6 560 aa26.56■■□□□ 1.84
SMPDL3A-203ENST00000539041 COG6Q9Y2V7 657 aa26.56■■□□□ 1.84
SMPDL3A-203ENST00000539041 SBNO1A3KN83 1393 aa26.55■■□□□ 1.84
SMPDL3A-203ENST00000539041 MS4A1P11836 297 aa26.55■■□□□ 1.84
SMPDL3A-203ENST00000539041 LTN1O94822 1766 aa26.54■■□□□ 1.84
SMPDL3A-203ENST00000539041 FLT4P35916 1363 aa26.54■■□□□ 1.84
SMPDL3A-203ENST00000539041 AAMPQ13685 434 aa26.53■■□□□ 1.84
SMPDL3A-203ENST00000539041 MAP3K19Q56UN5 1328 aa26.53■■□□□ 1.84
SMPDL3A-203ENST00000539041 HSP90AB2PQ58FF8 381 aa26.52■■□□□ 1.84
SMPDL3A-203ENST00000539041 ZKSCAN2Q63HK3 967 aa26.52■■□□□ 1.84
SMPDL3A-203ENST00000539041 CLUAP1Q96AJ1 413 aa26.52■■□□□ 1.84
SMPDL3A-203ENST00000539041 SOX12O15370 315 aa26.51■■□□□ 1.83
SMPDL3A-203ENST00000539041 SMC4Q9NTJ3 1288 aa26.51■■□□□ 1.83
SMPDL3A-203ENST00000539041 SULT6B1Q6IMI4 303 aa26.51■■□□□ 1.83
SMPDL3A-203ENST00000539041 PHF8Q9UPP1 1060 aa26.51■■□□□ 1.83
SMPDL3A-203ENST00000539041 TNNQ9UQP3 1299 aa26.51■■□□□ 1.83
SMPDL3A-203ENST00000539041 ARHGEF10O15013 1369 aa26.5■■□□□ 1.83
SMPDL3A-203ENST00000539041 GNAI1P63096 354 aa26.5■■□□□ 1.83
SMPDL3A-203ENST00000539041 IFT57Q9NWB7 429 aa26.5■■□□□ 1.83
SMPDL3A-203ENST00000539041 RLBP1P12271 317 aa26.49■■□□□ 1.83
SMPDL3A-203ENST00000539041 AEBP1Q8IUX7 1158 aa26.49■■□□□ 1.83
SMPDL3A-203ENST00000539041 NLRP6P59044 892 aa26.48■■□□□ 1.83
SMPDL3A-203ENST00000539041 SSH1Q8WYL5 1049 aa26.48■■□□□ 1.83
SMPDL3A-203ENST00000539041 LAS1LQ9Y4W2 734 aaKnown RBP26.48■■□□□ 1.83
SMPDL3A-203ENST00000539041 KIF24Q5T7B8 1368 aa26.48■■□□□ 1.83
SMPDL3A-203ENST00000539041 THUMPD2Q9BTF0 503 aaKnown RBP26.47■■□□□ 1.83
SMPDL3A-203ENST00000539041 ZNF853P0CG23 659 aa26.46■■□□□ 1.83
SMPDL3A-203ENST00000539041 ALDH1L2Q3SY69 923 aa26.46■■□□□ 1.83
SMPDL3A-203ENST00000539041 ZNF428Q96B54 188 aa26.46■■□□□ 1.83
SMPDL3A-203ENST00000539041 AMPHP49418 695 aa26.45■■□□□ 1.82
SMPDL3A-203ENST00000539041 DZIP1LQ8IYY4 767 aaKnown RBP26.45■■□□□ 1.82
SMPDL3A-203ENST00000539041 RBM33Q96EV2 1170 aaKnown RBP26.45■■□□□ 1.82
SMPDL3A-203ENST00000539041 MVPQ14764 893 aaKnown RBP26.43■■□□□ 1.82
SMPDL3A-203ENST00000539041 FTSJ3Q8IY81 847 aaKnown RBP26.43■■□□□ 1.82
SMPDL3A-203ENST00000539041 ABTB2Q8N961 1025 aa26.43■■□□□ 1.82
SMPDL3A-203ENST00000539041 KIF16BQ96L93 1317 aa26.43■■□□□ 1.82
SMPDL3A-203ENST00000539041 PAK3O75914 559 aaPredicted RBP26.42■■□□□ 1.82
SMPDL3A-203ENST00000539041 SKAP1Q86WV1 359 aa26.42■■□□□ 1.82
SMPDL3A-203ENST00000539041 CFAP44Q96MT7 982 aa26.42■■□□□ 1.82
SMPDL3A-203ENST00000539041 VIRMAQ69YN4 1812 aaKnown RBP26.42■■□□□ 1.82
SMPDL3A-203ENST00000539041 PDE4AP27815 886 aa26.41■■□□□ 1.82
SMPDL3A-203ENST00000539041 KDRP35968 1356 aa26.41■■□□□ 1.82
SMPDL3A-203ENST00000539041 KIF1AQ12756 1690 aa26.41■■□□□ 1.82
SMPDL3A-203ENST00000539041 IGHDP01880 384 aa26.41■■□□□ 1.82
SMPDL3A-203ENST00000539041 ATF7IPQ6VMQ6 1270 aa26.41■■□□□ 1.82
SMPDL3A-203ENST00000539041 MBIPQ9NS73 344 aa26.41■■□□□ 1.82
SMPDL3A-203ENST00000539041 FAM83GA6ND36 823 aa26.4■■□□□ 1.82
SMPDL3A-203ENST00000539041 TRIM27P14373 513 aa26.4■■□□□ 1.82
SMPDL3A-203ENST00000539041 NUTM2GQ5VZR2 741 aa26.4■■□□□ 1.82
SMPDL3A-203ENST00000539041 C14orf37Q86TY3 774 aa26.4■■□□□ 1.82
SMPDL3A-203ENST00000539041 BRPF1P55201 1214 aaPredicted RBP26.39■■□□□ 1.82
SMPDL3A-203ENST00000539041 NOB1Q9ULX3 412 aaKnown RBP26.39■■□□□ 1.82
SMPDL3A-203ENST00000539041 IGSF1Q8N6C5 1336 aa26.39■■□□□ 1.82
SMPDL3A-203ENST00000539041 IPO8O15397 1037 aaKnown RBP26.38■■□□□ 1.81
SMPDL3A-203ENST00000539041 BACH2Q9BYV9 841 aa26.38■■□□□ 1.81
SMPDL3A-203ENST00000539041 PHRF1Q9P1Y6 1649 aaKnown RBP26.38■■□□□ 1.81
SMPDL3A-203ENST00000539041 RTL1A6NKG5 1358 aa26.38■■□□□ 1.81
SMPDL3A-203ENST00000539041 NFAT5O94916 1531 aa26.38■■□□□ 1.81
SMPDL3A-203ENST00000539041 ESCO1Q5FWF5 840 aa26.38■■□□□ 1.81
SMPDL3A-203ENST00000539041 TRPM3Q9HCF6 1732 aaPredicted RBP26.37■■□□□ 1.81
SMPDL3A-203ENST00000539041 VAMP4O75379 141 aa26.37■■□□□ 1.81
SMPDL3A-203ENST00000539041 HOXC9P31274 260 aa26.37■■□□□ 1.81
SMPDL3A-203ENST00000539041 DCTN1Q14203 1278 aa26.36■■□□□ 1.81
SMPDL3A-203ENST00000539041 STRCP1A6NGW2 1772 aa26.36■■□□□ 1.81
SMPDL3A-203ENST00000539041 EYA1Q99502 592 aa26.35■■□□□ 1.81
SMPDL3A-203ENST00000539041 PSME1Q06323 249 aa26.34■■□□□ 1.81
SMPDL3A-203ENST00000539041 DDX19BQ9UMR2 479 aa26.34■■□□□ 1.81
SMPDL3A-203ENST00000539041 MSH5O43196 834 aa26.33■■□□□ 1.81
SMPDL3A-203ENST00000539041 PCDHB15Q9Y5E8 787 aa26.33■■□□□ 1.81
SMPDL3A-203ENST00000539041 PROSER2Q86WR7 435 aaPredicted RBP26.33■■□□□ 1.8
SMPDL3A-203ENST00000539041 TSPYL6Q8N831 410 aa26.33■■□□□ 1.8
SMPDL3A-203ENST00000539041 LRRC37A3O60309 1634 aa26.33■■□□□ 1.8
SMPDL3A-203ENST00000539041 TWISTNBQ3B726 338 aaPredicted RBP26.32■■□□□ 1.8
SMPDL3A-203ENST00000539041 RGPD2P0DJD1 1756 aa26.31■■□□□ 1.8
SMPDL3A-203ENST00000539041 MRPL50Q8N5N7 158 aaKnown RBP26.31■■□□□ 1.8
SMPDL3A-203ENST00000539041 ITPRIPQ8IWB1 547 aa26.3■■□□□ 1.8
SMPDL3A-203ENST00000539041 ANP32AP39687 249 aaKnown RBP26.3■■□□□ 1.8
SMPDL3A-203ENST00000539041 TMEM57Q8N5G2 664 aa26.29■■□□□ 1.8
SMPDL3A-203ENST00000539041 C8orf58Q8NAV2 365 aa26.29■■□□□ 1.8
SMPDL3A-203ENST00000539041 RWDD1Q9H446 243 aaPredicted RBP26.29■■□□□ 1.8
SMPDL3A-203ENST00000539041 CRB1P82279 1406 aa26.29■■□□□ 1.8
SMPDL3A-203ENST00000539041 SLIT3O75094 1523 aa26.29■■□□□ 1.8
SMPDL3A-203ENST00000539041 RGS3P49796 1198 aa26.28■■□□□ 1.8
SMPDL3A-203ENST00000539041 MTHFSDQ2M296 383 aaKnown RBP26.28■■□□□ 1.8
SMPDL3A-203ENST00000539041 MCM10Q7L590 875 aa26.28■■□□□ 1.8
SMPDL3A-203ENST00000539041 GAS2L2Q8NHY3 880 aa26.28■■□□□ 1.8
SMPDL3A-203ENST00000539041 ARHGAP45Q92619 1136 aa26.28■■□□□ 1.8
SMPDL3A-203ENST00000539041 CHL1O00533 1208 aa26.27■■□□□ 1.8
SMPDL3A-203ENST00000539041 ORAI2Q96SN7 254 aa26.27■■□□□ 1.8
SMPDL3A-203ENST00000539041 ELL2O00472 640 aaPredicted RBP26.26■■□□□ 1.79
SMPDL3A-203ENST00000539041 KCNH5Q8NCM2 988 aa26.26■■□□□ 1.79
SMPDL3A-203ENST00000539041 C1orf167Q5SNV9 1468 aa26.26■■□□□ 1.79
SMPDL3A-203ENST00000539041 KIAA0232Q92628 1395 aa26.25■■□□□ 1.79
SMPDL3A-203ENST00000539041 IP6K1Q92551 441 aa26.25■■□□□ 1.79
SMPDL3A-203ENST00000539041 ALS2Q96Q42 1657 aa26.25■■□□□ 1.79
SMPDL3A-203ENST00000539041 HAP1P54257 671 aaPredicted RBP26.24■■□□□ 1.79
SMPDL3A-203ENST00000539041 RTF1Q92541 710 aaKnown RBP26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms