RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 PTPRKQ15262 1439 aa13.32□□□□□ -0.28
CLSTN3-207ENST00000537408 RGS22Q8NE09 1264 aa13.31□□□□□ -0.28
CLSTN3-207ENST00000537408 PDLIM2Q96JY6 352 aa13.31□□□□□ -0.28
CLSTN3-207ENST00000537408 CDC42BPBQ9Y5S2 1711 aa13.31□□□□□ -0.28
CLSTN3-207ENST00000537408 LTKP29376 864 aa13.31□□□□□ -0.28
CLSTN3-207ENST00000537408 ERVK-7P63135 1459 aa13.31□□□□□ -0.28
CLSTN3-207ENST00000537408 OGFRQ9NZT2 677 aa13.31□□□□□ -0.28
CLSTN3-207ENST00000537408 BLMP54132 1417 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-207ENST00000537408 CHRM1P11229 460 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-207ENST00000537408 SMC5Q8IY18 1101 aa13.3□□□□□ -0.28
CLSTN3-207ENST00000537408 CFAP53Q96M91 514 aa13.3□□□□□ -0.28
CLSTN3-207ENST00000537408 LRRC59Q96AG4 307 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-207ENST00000537408 RWDD1Q9H446 243 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-207ENST00000537408 GTF2F1P35269 517 aaKnown RBP eCLIP13.29□□□□□ -0.282e-7■■■■■ 29.2
CLSTN3-207ENST00000537408 NPHP3Q7Z494 1330 aa13.29□□□□□ -0.28
CLSTN3-207ENST00000537408 CLGNO14967 610 aa13.29□□□□□ -0.28
CLSTN3-207ENST00000537408 IGSF3O75054 1194 aa13.29□□□□□ -0.28
CLSTN3-207ENST00000537408 PDE3AQ14432 1141 aa13.29□□□□□ -0.28
CLSTN3-207ENST00000537408 DUSP27Q5VZP5 1158 aa13.29□□□□□ -0.28
CLSTN3-207ENST00000537408 CAVIN1Q6NZI2 390 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-207ENST00000537408 DHX37Q8IY37 1157 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-207ENST00000537408 SLAIN2Q9P270 581 aa13.29□□□□□ -0.28
CLSTN3-207ENST00000537408 EFCAB6Q5THR3 1501 aa13.28□□□□□ -0.28
CLSTN3-207ENST00000537408 SNX21Q969T3 373 aa13.28□□□□□ -0.28
CLSTN3-207ENST00000537408 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-207ENST00000537408 ARHGAP31Q2M1Z3 1444 aa13.28□□□□□ -0.28
CLSTN3-207ENST00000537408 ADAMTS2O95450 1211 aa13.27□□□□□ -0.28
CLSTN3-207ENST00000537408 ZNF692Q9BU19 519 aaPredicted RBP13.27□□□□□ -0.28
CLSTN3-207ENST00000537408 ZNF710Q8N1W2 664 aa13.27□□□□□ -0.29
CLSTN3-207ENST00000537408 NOS1P29475 1434 aa13.27□□□□□ -0.29
CLSTN3-207ENST00000537408 ZSCAN23Q3MJ62 389 aa13.27□□□□□ -0.29
CLSTN3-207ENST00000537408 TRIM6-TRIM34B2RNG4 842 aa13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 AXDND1Q5T1B0 1012 aaPredicted RBP13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 TRIM34Q9BYJ4 488 aa13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 BCCIPQ9P287 314 aaKnown RBP eCLIP13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 PDZRN3Q9UPQ7 1066 aa13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 TMEM94Q12767 1356 aa13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 PARD3Q8TEW0 1356 aa13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 ABCC3O15438 1527 aa13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 PHF8Q9UPP1 1060 aa13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 FOXO3O43524 673 aa13.26□□□□□ -0.29
CLSTN3-207ENST00000537408 DISP3Q9P2K9 1392 aa13.25□□□□□ -0.29
CLSTN3-207ENST00000537408 ABCA6Q8N139 1617 aa13.25□□□□□ -0.29
CLSTN3-207ENST00000537408 RBSNQ9H1K0 784 aa13.25□□□□□ -0.29
CLSTN3-207ENST00000537408 BCL2L12Q9HB09 334 aa13.25□□□□□ -0.29
CLSTN3-207ENST00000537408 CFAP65Q6ZU64 1925 aaKnown RBP13.25□□□□□ -0.29
CLSTN3-207ENST00000537408 FER1L4A9Z1Z3 1794 aa13.25□□□□□ -0.29
CLSTN3-207ENST00000537408 U2AF2P26368 475 aaKnown RBP eCLIP13.25□□□□□ -0.29
CLSTN3-207ENST00000537408 PRDM11Q9NQV5 511 aa13.24□□□□□ -0.29
CLSTN3-207ENST00000537408 TSC1Q92574 1164 aa13.24□□□□□ -0.29
CLSTN3-207ENST00000537408 PTPRTO14522 1441 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 MCTP1Q6DN14 999 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 MORC1Q86VD1 984 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 PLEKHG1Q9ULL1 1385 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 MAST1Q9Y2H9 1570 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 NCOA3Q9Y6Q9 1424 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 WAPLQ7Z5K2 1190 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 HDAC5Q9UQL6 1122 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 COG6Q9Y2V7 657 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 NOLC1Q14978 699 aaKnown RBP eCLIP13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 ABTB2Q8N961 1025 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 FOXD4L1Q9NU39 408 aa13.23□□□□□ -0.29
CLSTN3-207ENST00000537408 BAG4O95429 457 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 AMPHP49418 695 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 NUCB2P80303 420 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 CERS3Q8IU89 383 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 PIBF1Q8WXW3 757 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 PLXNC1O60486 1568 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 RICTORQ6R327 1708 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 ADGRF5Q8IZF2 1346 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 DDIT3P35638 169 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 NLRP6P59044 892 aa13.22□□□□□ -0.29
CLSTN3-207ENST00000537408 SSFA2P28290 1259 aa13.21□□□□□ -0.29
CLSTN3-207ENST00000537408 SLFN5Q08AF3 891 aa13.21□□□□□ -0.29
CLSTN3-207ENST00000537408 YY1AP1Q9H869 796 aa13.21□□□□□ -0.29
CLSTN3-207ENST00000537408 CAMSAP1Q5T5Y3 1602 aa13.21□□□□□ -0.29
CLSTN3-207ENST00000537408 INO80Q9ULG1 1556 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-207ENST00000537408 PIK3R4Q99570 1358 aa13.21□□□□□ -0.3
CLSTN3-207ENST00000537408 KIDINS220Q9ULH0 1771 aa13.21□□□□□ -0.3
CLSTN3-207ENST00000537408 KRT28Q7Z3Y7 464 aa13.21□□□□□ -0.3
CLSTN3-207ENST00000537408 PRIM1P49642 420 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 C14orf93Q9H972 538 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 EFCC1Q9HA90 598 aa13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 CCDC61Q9Y6R9 512 aa13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 BCORL1Q5H9F3 1711 aa13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 K7ELQ4 463 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 LRSAM1Q6UWE0 723 aa13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 FAM193AP78312 1265 aa13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 NEUROD2Q15784 382 aa13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 CREBRFQ8IUR6 639 aa13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 CLTCQ00610 1675 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-207ENST00000537408 NKTRP30414 1462 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 BCAR3O75815 825 aa13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 SYAP1Q96A49 352 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 COG3Q96JB2 828 aa13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 C8orf37Q96NL8 207 aa13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 U2SURPO15042 1029 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-207ENST00000537408 ZNF622Q969S3 477 aaKnown RBP eCLIP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms