RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 ZHX3Q9H4I2 956 aa21.58■■□□□ 1.05
SFSWAP-203ENST00000535236 FIBPO43427 364 aa21.58■■□□□ 1.05
SFSWAP-203ENST00000535236 MRE11P49959 708 aa21.58■■□□□ 1.05
SFSWAP-203ENST00000535236 TSR2Q969E8 191 aaKnown RBP21.58■■□□□ 1.05
SFSWAP-203ENST00000535236 TSPY26PQ9H489 355 aa21.58■■□□□ 1.05
SFSWAP-203ENST00000535236 ZNHIT6Q9NWK9 470 aaKnown RBP21.58■■□□□ 1.04
SFSWAP-203ENST00000535236 PRDM11Q9NQV5 511 aa21.57■■□□□ 1.04
SFSWAP-203ENST00000535236 CDCA7LQ96GN5 454 aa21.57■■□□□ 1.04
SFSWAP-203ENST00000535236 NUP133Q8WUM0 1156 aa21.57■■□□□ 1.04
SFSWAP-203ENST00000535236 STK3Q13188 491 aa21.57■■□□□ 1.04
SFSWAP-203ENST00000535236 ZNF428Q96B54 188 aa21.56■■□□□ 1.04
SFSWAP-203ENST00000535236 PRPF40AO75400 957 aaKnown RBP21.56■■□□□ 1.04
SFSWAP-203ENST00000535236 STIM1Q13586 685 aa21.56■■□□□ 1.04
SFSWAP-203ENST00000535236 LRRC9Q6ZRR7 1453 aa21.56■■□□□ 1.04
SFSWAP-203ENST00000535236 ANKLE2Q86XL3 938 aa21.56■■□□□ 1.04
SFSWAP-203ENST00000535236 SLC12A5Q9H2X9 1139 aa21.55■■□□□ 1.04
SFSWAP-203ENST00000535236 NFKBIBQ15653 356 aa21.55■■□□□ 1.04
SFSWAP-203ENST00000535236 SKIDA1Q1XH10 827 aa21.55■■□□□ 1.04
SFSWAP-203ENST00000535236 NOM1Q5C9Z4 860 aaKnown RBP21.55■■□□□ 1.04
SFSWAP-203ENST00000535236 AEBP1Q8IUX7 1158 aa21.55■■□□□ 1.04
SFSWAP-203ENST00000535236 ZSCAN29Q8IWY8 852 aaPredicted RBP21.55■■□□□ 1.04
SFSWAP-203ENST00000535236 RTEL1-TNFRSF6BF6WH68 1400 aa21.55■■□□□ 1.04
SFSWAP-203ENST00000535236 FKBP4Q02790 459 aaKnown RBP eCLIP21.54■■□□□ 1.04
SFSWAP-203ENST00000535236 DACH1Q9UI36 760 aa21.54■■□□□ 1.04
SFSWAP-203ENST00000535236 NOL7Q9UMY1 257 aaKnown RBP21.54■■□□□ 1.04
SFSWAP-203ENST00000535236 PDE3AQ14432 1141 aa21.54■■□□□ 1.04
SFSWAP-203ENST00000535236 HFM1A2PYH4 1435 aa21.53■■□□□ 1.04
SFSWAP-203ENST00000535236 CASKIN1Q8WXD9 1431 aa21.53■■□□□ 1.04
SFSWAP-203ENST00000535236 MAP4K4O95819 1239 aaPredicted RBP21.53■■□□□ 1.04
SFSWAP-203ENST00000535236 TRAK2O60296 914 aa21.53■■□□□ 1.04
SFSWAP-203ENST00000535236 SERPINC1P01008 464 aa21.53■■□□□ 1.04
SFSWAP-203ENST00000535236 VSIG10Q8N0Z9 540 aa21.53■■□□□ 1.04
SFSWAP-203ENST00000535236 TANGO6Q9C0B7 1094 aa21.53■■□□□ 1.04
SFSWAP-203ENST00000535236 PRG4Q92954 1404 aaPredicted RBP21.52■■□□□ 1.04
SFSWAP-203ENST00000535236 AACSQ86V21 672 aa21.52■■□□□ 1.04
SFSWAP-203ENST00000535236 LUC7LQ9NQ29 371 aaKnown RBP21.52■■□□□ 1.04
SFSWAP-203ENST00000535236 SLC52A1Q9NWF4 448 aa21.52■■□□□ 1.03
SFSWAP-203ENST00000535236 BTBD11A6QL63 1104 aa21.51■■□□□ 1.03
SFSWAP-203ENST00000535236 PIP4K2BP78356 416 aa21.51■■□□□ 1.03
SFSWAP-203ENST00000535236 RAI14Q9P0K7 980 aa21.51■■□□□ 1.03
SFSWAP-203ENST00000535236 MPHOSPH10O00566 681 aaKnown RBP21.51■■□□□ 1.03
SFSWAP-203ENST00000535236 ME1P48163 572 aa21.51■■□□□ 1.03
SFSWAP-203ENST00000535236 TDO2P48775 406 aa21.51■■□□□ 1.03
SFSWAP-203ENST00000535236 CEP126Q9P2H0 1117 aa21.51■■□□□ 1.03
SFSWAP-203ENST00000535236 NBPF1Q3BBV0 1214 aa21.51■■□□□ 1.03
SFSWAP-203ENST00000535236 DEF6Q9H4E7 631 aa21.5■■□□□ 1.03
SFSWAP-203ENST00000535236 ERLIN2O94905 339 aa21.5■■□□□ 1.03
SFSWAP-203ENST00000535236 GRIN2BQ13224 1484 aa21.5■■□□□ 1.03
SFSWAP-203ENST00000535236 PPFIBP1Q86W92 1011 aa21.5■■□□□ 1.03
SFSWAP-203ENST00000535236 UBAC1Q9BSL1 405 aa21.5■■□□□ 1.03
SFSWAP-203ENST00000535236 CDKL5O76039 1030 aa21.5■■□□□ 1.03
SFSWAP-203ENST00000535236 BICDL1Q6ZP65 573 aa21.49■■□□□ 1.03
SFSWAP-203ENST00000535236 CCDC191Q8NCU4 936 aa21.49■■□□□ 1.03
SFSWAP-203ENST00000535236 CTNNA3Q9UI47 895 aa21.49■■□□□ 1.03
SFSWAP-203ENST00000535236 NEFHP12036 1026 aa21.49■■□□□ 1.03
SFSWAP-203ENST00000535236 SLC26A8Q96RN1 970 aa21.49■■□□□ 1.03
SFSWAP-203ENST00000535236 IGHMBP2P38935 993 aaKnown RBP21.48■■□□□ 1.03
SFSWAP-203ENST00000535236 CT47B1P0C2W7 299 aaPredicted RBP21.48■■□□□ 1.03
SFSWAP-203ENST00000535236 BMP2KQ9NSY1 1161 aaPredicted RBP21.48■■□□□ 1.03
SFSWAP-203ENST00000535236 SRGAP3O43295 1099 aa21.48■■□□□ 1.03
SFSWAP-203ENST00000535236 MAP7D2Q96T17 732 aa21.48■■□□□ 1.03
SFSWAP-203ENST00000535236 TXLNBQ8N3L3 684 aa21.47■■□□□ 1.03
SFSWAP-203ENST00000535236 H0YHG0 523 aa21.47■■□□□ 1.03
SFSWAP-203ENST00000535236 WDR63Q8IWG1 891 aa21.47■■□□□ 1.03
SFSWAP-203ENST00000535236 PLEKHH2Q8IVE3 1493 aa21.47■■□□□ 1.03
SFSWAP-203ENST00000535236 LRP2BPQ9P2M1 347 aa21.47■■□□□ 1.03
SFSWAP-203ENST00000535236 BCAR3O75815 825 aa21.47■■□□□ 1.03
SFSWAP-203ENST00000535236 SSBP05455 408 aaKnown RBP eCLIP21.47■■□□□ 1.03
SFSWAP-203ENST00000535236 TNMDQ9H2S6 317 aa21.47■■□□□ 1.03
SFSWAP-203ENST00000535236 HMGB2P26583 209 aaKnown RBP21.46■■□□□ 1.03
SFSWAP-203ENST00000535236 ZNF76P36508 570 aa21.46■■□□□ 1.03
SFSWAP-203ENST00000535236 DHX8Q14562 1220 aaKnown RBP21.46■■□□□ 1.03
SFSWAP-203ENST00000535236 WDR33Q9C0J8 1336 aaKnown RBP21.46■■□□□ 1.03
SFSWAP-203ENST00000535236 CCDC192P0DO97 292 aa21.46■■□□□ 1.03
SFSWAP-203ENST00000535236 BLOC1S2Q6QNY1 142 aa21.46■■□□□ 1.03
SFSWAP-203ENST00000535236 KRT85P78386 507 aa21.45■■□□□ 1.03
SFSWAP-203ENST00000535236 LARP1BQ659C4 914 aaKnown RBP21.45■■□□□ 1.03
SFSWAP-203ENST00000535236 TMOD2Q9NZR1 351 aa21.45■■□□□ 1.02
SFSWAP-203ENST00000535236 ATF7IPQ6VMQ6 1270 aa21.45■■□□□ 1.02
SFSWAP-203ENST00000535236 ZRSR2Q15696 482 aaKnown RBP21.45■■□□□ 1.02
SFSWAP-203ENST00000535236 POGZQ7Z3K3 1410 aa21.44■■□□□ 1.02
SFSWAP-203ENST00000535236 RRS1Q15050 365 aaKnown RBP21.44■■□□□ 1.02
SFSWAP-203ENST00000535236 SPC24Q8NBT2 197 aa21.44■■□□□ 1.02
SFSWAP-203ENST00000535236 XPCQ01831 940 aaPredicted RBP21.44■■□□□ 1.02
SFSWAP-203ENST00000535236 CCDC181Q5TID7 509 aa21.44■■□□□ 1.02
SFSWAP-203ENST00000535236 C9orf84Q5VXU9 1444 aa21.44■■□□□ 1.02
SFSWAP-203ENST00000535236 AXDND1Q5T1B0 1012 aaPredicted RBP21.44■■□□□ 1.02
SFSWAP-203ENST00000535236 STARD3NLO95772 234 aa21.43■■□□□ 1.02
SFSWAP-203ENST00000535236 PDRG1Q9NUG6 133 aa21.43■■□□□ 1.02
SFSWAP-203ENST00000535236 MATR3P43243 847 aaKnown RBP eCLIP21.43■■□□□ 1.023e-6■■■■□ 20.4
SFSWAP-203ENST00000535236 CWC15Q9P013 229 aaKnown RBP21.43■■□□□ 1.02
SFSWAP-203ENST00000535236 KIF21BO75037 1637 aa21.43■■□□□ 1.02
SFSWAP-203ENST00000535236 SPINK5Q9NQ38 1064 aaPredicted RBP21.43■■□□□ 1.02
SFSWAP-203ENST00000535236 ANKRD18AQ8IVF6 992 aa21.42■■□□□ 1.02
SFSWAP-203ENST00000535236 ZC3H6P61129 1189 aaKnown RBP21.42■■□□□ 1.02
SFSWAP-203ENST00000535236 SEPT7Q16181 437 aaKnown RBP21.42■■□□□ 1.02
SFSWAP-203ENST00000535236 IDH1O75874 414 aaKnown RBP21.42■■□□□ 1.02
SFSWAP-203ENST00000535236 ATAD2Q6PL18 1390 aa21.41■■□□□ 1.02
SFSWAP-203ENST00000535236 SEPT11Q9NVA2 429 aaKnown RBP21.41■■□□□ 1.02
SFSWAP-203ENST00000535236 CBFA2T2O43439 604 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms