RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 AATKQ6ZMQ8 1374 aa11.69□□□□□ -0.54
NEDD8-207ENST00000533242 YTHDC1Q96MU7 727 aaKnown RBP11.68□□□□□ -0.54
NEDD8-207ENST00000533242 PIK3C2AO00443 1686 aa11.68□□□□□ -0.54
NEDD8-207ENST00000533242 MYOM1P52179 1685 aa11.68□□□□□ -0.54
NEDD8-207ENST00000533242 RGPD5Q99666 1765 aa11.68□□□□□ -0.54
NEDD8-207ENST00000533242 BCL9O00512 1426 aa11.68□□□□□ -0.54
NEDD8-207ENST00000533242 USP6P35125 1406 aa11.67□□□□□ -0.54
NEDD8-207ENST00000533242 SRPK2P78362 688 aaKnown RBP11.67□□□□□ -0.54
NEDD8-207ENST00000533242 DDB1Q16531 1140 aa11.67□□□□□ -0.54
NEDD8-207ENST00000533242 BCL11BQ9C0K0 894 aaPredicted RBP11.67□□□□□ -0.54
NEDD8-207ENST00000533242 CDCA7Q9BWT1 371 aaPredicted RBP11.66□□□□□ -0.54
NEDD8-207ENST00000533242 CENPJQ9HC77 1338 aaPredicted RBP11.66□□□□□ -0.54
NEDD8-207ENST00000533242 ANO8Q9HCE9 1232 aaPredicted RBP11.65□□□□□ -0.54
NEDD8-207ENST00000533242 ZBTB7CA1YPR0 619 aa11.65□□□□□ -0.54
NEDD8-207ENST00000533242 NLRP6P59044 892 aa11.65□□□□□ -0.54
NEDD8-207ENST00000533242 TOM1L2Q6ZVM7 507 aa11.65□□□□□ -0.54
NEDD8-207ENST00000533242 CABP2Q9NPB3 220 aa11.65□□□□□ -0.54
NEDD8-207ENST00000533242 GTF3C3Q9Y5Q9 886 aa11.65□□□□□ -0.54
NEDD8-207ENST00000533242 NBPF1Q3BBV0 1214 aa11.64□□□□□ -0.55
NEDD8-207ENST00000533242 WDR17Q8IZU2 1322 aa11.64□□□□□ -0.55
NEDD8-207ENST00000533242 TRPM1Q7Z4N2 1603 aa11.64□□□□□ -0.55
NEDD8-207ENST00000533242 CPSF1Q10570 1443 aaKnown RBP11.64□□□□□ -0.55
NEDD8-207ENST00000533242 CHD4Q14839 1912 aa11.64□□□□□ -0.55
NEDD8-207ENST00000533242 CENPBP07199 599 aaPredicted RBP11.63□□□□□ -0.55
NEDD8-207ENST00000533242 MARCH10Q8NA82 808 aaPredicted RBP11.63□□□□□ -0.55
NEDD8-207ENST00000533242 NHSQ6T4R5 1651 aa11.63□□□□□ -0.55
NEDD8-207ENST00000533242 ABCC6O95255 1503 aa11.63□□□□□ -0.55
NEDD8-207ENST00000533242 PTF1AQ7RTS3 328 aa11.63□□□□□ -0.55
NEDD8-207ENST00000533242 PROM2Q8N271 834 aa11.62□□□□□ -0.55
NEDD8-207ENST00000533242 STK32BQ9NY57 414 aa11.62□□□□□ -0.55
NEDD8-207ENST00000533242 CABP1Q9NZU7 370 aa11.62□□□□□ -0.55
NEDD8-207ENST00000533242 PTGER2P43116 358 aa11.61□□□□□ -0.55
NEDD8-207ENST00000533242 ZBTB7AO95365 584 aa11.61□□□□□ -0.55
NEDD8-207ENST00000533242 SIN3AQ96ST3 1273 aa11.61□□□□□ -0.55
NEDD8-207ENST00000533242 CARD10Q9BWT7 1032 aa11.61□□□□□ -0.55
NEDD8-207ENST00000533242 PDGFDQ9GZP0 370 aaPredicted RBP11.6□□□□□ -0.55
NEDD8-207ENST00000533242 AXIN2Q9Y2T1 843 aa11.6□□□□□ -0.55
NEDD8-207ENST00000533242 NFAT5O94916 1531 aa11.6□□□□□ -0.55
NEDD8-207ENST00000533242 TXNRD1Q16881 649 aa11.6□□□□□ -0.55
NEDD8-207ENST00000533242 ARHGEF25Q86VW2 580 aa11.6□□□□□ -0.55
NEDD8-207ENST00000533242 KCNH5Q8NCM2 988 aa11.6□□□□□ -0.55
NEDD8-207ENST00000533242 USP54Q70EL1 1684 aa11.6□□□□□ -0.55
NEDD8-207ENST00000533242 PAPPAQ13219 1627 aa11.6□□□□□ -0.55
NEDD8-207ENST00000533242 CCDC7Q96M83 1385 aa11.59□□□□□ -0.55
NEDD8-207ENST00000533242 SLC15A2Q16348 729 aa11.59□□□□□ -0.55
NEDD8-207ENST00000533242 TNS2Q63HR2 1409 aa11.59□□□□□ -0.55
NEDD8-207ENST00000533242 MON2Q7Z3U7 1717 aa11.59□□□□□ -0.55
NEDD8-207ENST00000533242 EVC2Q86UK5 1308 aa11.59□□□□□ -0.55
NEDD8-207ENST00000533242 ATF5Q9Y2D1 282 aaPredicted RBP11.59□□□□□ -0.55
NEDD8-207ENST00000533242 TTC21BQ7Z4L5 1316 aa11.58□□□□□ -0.56
NEDD8-207ENST00000533242 TTC21AQ8NDW8 1320 aa11.58□□□□□ -0.56
NEDD8-207ENST00000533242 EXOC5O00471 708 aa11.58□□□□□ -0.56
NEDD8-207ENST00000533242 CSB-PGBD3P0DP91 1061 aa11.58□□□□□ -0.56
NEDD8-207ENST00000533242 ZNF692Q9BU19 519 aaPredicted RBP11.58□□□□□ -0.56
NEDD8-207ENST00000533242 QSER1Q2KHR3 1735 aa11.58□□□□□ -0.56
NEDD8-207ENST00000533242 BTAF1O14981 1849 aa11.58□□□□□ -0.56
NEDD8-207ENST00000533242 ZNF784Q8NCA9 323 aaPredicted RBP11.58□□□□□ -0.56
NEDD8-207ENST00000533242 MTFR1LQ9H019 292 aa11.58□□□□□ -0.56
NEDD8-207ENST00000533242 SGIP1Q9BQI5 828 aa11.57□□□□□ -0.56
NEDD8-207ENST00000533242 SYT17Q9BSW7 474 aa11.57□□□□□ -0.56
NEDD8-207ENST00000533242 FHDC1Q9C0D6 1143 aaPredicted RBP11.57□□□□□ -0.56
NEDD8-207ENST00000533242 LTN1O94822 1766 aa11.57□□□□□ -0.56
NEDD8-207ENST00000533242 COL24A1Q17RW2 1714 aa11.56□□□□□ -0.56
NEDD8-207ENST00000533242 MAP3K5Q99683 1374 aa11.56□□□□□ -0.56
NEDD8-207ENST00000533242 ARXQ96QS3 562 aa11.53□□□□□ -0.56
NEDD8-207ENST00000533242 USP31Q70CQ4 1352 aa11.53□□□□□ -0.56
NEDD8-207ENST00000533242 KTN1Q86UP2 1357 aaKnown RBP11.53□□□□□ -0.56
NEDD8-207ENST00000533242 SOX12O15370 315 aa11.53□□□□□ -0.56
NEDD8-207ENST00000533242 FAM208AQ9UK61 1670 aaKnown RBP11.52□□□□□ -0.57
NEDD8-207ENST00000533242 TUBGCP6Q96RT7 1819 aa11.52□□□□□ -0.57
NEDD8-207ENST00000533242 ACSBG1Q96GR2 724 aa11.51□□□□□ -0.57
NEDD8-207ENST00000533242 ERBB3P21860 1342 aa11.5□□□□□ -0.57
NEDD8-207ENST00000533242 KAT6BQ8WYB5 2073 aa11.5□□□□□ -0.57
NEDD8-207ENST00000533242 IL2RBP14784 551 aa11.5□□□□□ -0.57
NEDD8-207ENST00000533242 C1QTNF8P60827 252 aa11.5□□□□□ -0.57
NEDD8-207ENST00000533242 L3MBTL2Q969R5 705 aa11.5□□□□□ -0.57
NEDD8-207ENST00000533242 SENP3-EIF4A1A0A087X0R7 540 aa11.49□□□□□ -0.57
NEDD8-207ENST00000533242 NLRP2Q9NX02 1062 aa11.49□□□□□ -0.57
NEDD8-207ENST00000533242 ZNF827Q17R98 1081 aa11.49□□□□□ -0.57
NEDD8-207ENST00000533242 SLC16A10Q8TF71 515 aa11.49□□□□□ -0.57
NEDD8-207ENST00000533242 ROCK2O75116 1388 aaKnown RBP11.49□□□□□ -0.57
NEDD8-207ENST00000533242 LY75O60449 1722 aa11.49□□□□□ -0.57
NEDD8-207ENST00000533242 AKT1S1Q96B36 256 aa11.48□□□□□ -0.57
NEDD8-207ENST00000533242 SBNO2Q9Y2G9 1366 aa11.48□□□□□ -0.57
NEDD8-207ENST00000533242 CD163L1Q9NR16 1453 aa11.48□□□□□ -0.57
NEDD8-207ENST00000533242 SLC27A3Q5K4L6 730 aa11.47□□□□□ -0.57
NEDD8-207ENST00000533242 ANKRD24Q8TF21 1146 aa11.47□□□□□ -0.57
NEDD8-207ENST00000533242 DOT1LQ8TEK3 1739 aa11.47□□□□□ -0.57
NEDD8-207ENST00000533242 GPR162Q16538 588 aa11.47□□□□□ -0.57
NEDD8-207ENST00000533242 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.47□□□□□ -0.57
NEDD8-207ENST00000533242 LRRC4BQ9NT99 713 aa11.47□□□□□ -0.57
NEDD8-207ENST00000533242 NME9Q86XW9 330 aa11.46□□□□□ -0.57
NEDD8-207ENST00000533242 POLD1P28340 1107 aa11.46□□□□□ -0.58
NEDD8-207ENST00000533242 SHANK3Q9BYB0 1731 aa11.45□□□□□ -0.58
NEDD8-207ENST00000533242 EDC4Q6P2E9 1401 aaKnown RBP11.45□□□□□ -0.58
NEDD8-207ENST00000533242 HDGFL2Q7Z4V5 671 aaPredicted RBP11.44□□□□□ -0.58
NEDD8-207ENST00000533242 PNPLA7Q6ZV29 1317 aa11.44□□□□□ -0.58
NEDD8-207ENST00000533242 RGPD2P0DJD1 1756 aa11.44□□□□□ -0.58
NEDD8-207ENST00000533242 GIGYF1O75420 1035 aaPredicted RBP11.43□□□□□ -0.58
NEDD8-207ENST00000533242 ANKRD36BQ8N2N9 1353 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms