RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ESPNB1AK53 854 aa8.83□□□□□ -1
CD44-215ENST00000525241 ALDH1A1P00352 501 aa8.83□□□□□ -1
CD44-215ENST00000525241 CYP4X1Q8N118 509 aa8.83□□□□□ -1
CD44-215ENST00000525241 KCTD15Q96SI1 283 aaPredicted RBP8.83□□□□□ -1
CD44-215ENST00000525241 PDZRN3Q9UPQ7 1066 aa8.83□□□□□ -1
CD44-215ENST00000525241 TTC24A2A3L6 582 aaPredicted RBP8.82□□□□□ -1
CD44-215ENST00000525241 J3QL48 77 aa8.82□□□□□ -1
CD44-215ENST00000525241 SUPT5HO00267 1087 aaKnown RBP8.82□□□□□ -1
CD44-215ENST00000525241 GIGYF1O75420 1035 aaPredicted RBP8.82□□□□□ -1
CD44-215ENST00000525241 NBPF20Q3BBV1 942 aa8.82□□□□□ -1
CD44-215ENST00000525241 C1orf115Q9H7X2 142 aa8.82□□□□□ -1
CD44-215ENST00000525241 ADH1CP00326 375 aa8.81□□□□□ -1
CD44-215ENST00000525241 SMPD1P17405 629 aa8.81□□□□□ -1
CD44-215ENST00000525241 PHTF2Q8N3S3 785 aa8.81□□□□□ -1
CD44-215ENST00000525241 CALR3Q96L12 384 aaKnown RBP8.81□□□□□ -1
CD44-215ENST00000525241 INTS6LQ5JSJ4 861 aaKnown RBP8.8□□□□□ -1
CD44-215ENST00000525241 FSHRP23945 695 aa8.79□□□□□ -1
CD44-215ENST00000525241 NR5A1Q13285 461 aa8.79□□□□□ -1
CD44-215ENST00000525241 UCN2Q96RP3 112 aa8.79□□□□□ -1
CD44-215ENST00000525241 PIK3CDO00329 1044 aa8.78□□□□□ -1
CD44-215ENST00000525241 NR3C2P08235 984 aa8.78□□□□□ -1
CD44-215ENST00000525241 SEPT12Q8IYM1 358 aa8.78□□□□□ -1
CD44-215ENST00000525241 CHIC2Q9UKJ5 165 aa8.78□□□□□ -1
CD44-215ENST00000525241 WASF2Q9Y6W5 498 aa8.78□□□□□ -1
CD44-215ENST00000525241 GFRA3O60609 400 aa8.77□□□□□ -1.01
CD44-215ENST00000525241 SLFNL1Q499Z3 407 aa8.77□□□□□ -1.01
CD44-215ENST00000525241 RAB15P59190 212 aa8.76□□□□□ -1.01
CD44-215ENST00000525241 NNTQ13423 1086 aa8.76□□□□□ -1.01
CD44-215ENST00000525241 TSGA10IPQ3SY00 556 aa8.76□□□□□ -1.01
CD44-215ENST00000525241 RNF20Q5VTR2 975 aa8.76□□□□□ -1.01
CD44-215ENST00000525241 RNF135Q8IUD6 432 aa8.76□□□□□ -1.01
CD44-215ENST00000525241 CCDC85AQ96PX6 553 aaPredicted RBP8.76□□□□□ -1.01
CD44-215ENST00000525241 ERVH48-1M5A8F1 160 aa8.75□□□□□ -1.01
CD44-215ENST00000525241 NRG2O14511 850 aaPredicted RBP8.75□□□□□ -1.01
CD44-215ENST00000525241 CCDC116Q8IYX3 515 aa8.75□□□□□ -1.01
CD44-215ENST00000525241 NFATC2IPQ8NCF5 419 aa8.75□□□□□ -1.01
CD44-215ENST00000525241 PPP1R26Q5T8A7 1209 aaPredicted RBP8.74□□□□□ -1.01
CD44-215ENST00000525241 TBC1D9Q6ZT07 1266 aa8.74□□□□□ -1.01
CD44-215ENST00000525241 CCDC125Q86Z20 511 aa8.74□□□□□ -1.01
CD44-215ENST00000525241 HPS1Q92902 700 aa8.74□□□□□ -1.01
CD44-215ENST00000525241 KLF16Q9BXK1 252 aaPredicted RBP8.74□□□□□ -1.01
CD44-215ENST00000525241 FAM187AA6NFU0 413 aa8.73□□□□□ -1.01
CD44-215ENST00000525241 DHX9Q08211 1270 aaKnown RBP8.73□□□□□ -1.01
CD44-215ENST00000525241 CCDC82Q8N4S0 544 aa8.73□□□□□ -1.01
CD44-215ENST00000525241 PLPP7Q8NBV4 271 aa8.73□□□□□ -1.01
CD44-215ENST00000525241 PPP1R12CQ9BZL4 782 aa8.73□□□□□ -1.01
CD44-215ENST00000525241 TMPRSS4Q9NRS4 437 aa8.73□□□□□ -1.01
CD44-215ENST00000525241 TFIP11Q9UBB9 837 aaKnown RBP8.73□□□□□ -1.01
CD44-215ENST00000525241 PALM3A6NDB9 673 aaPredicted RBP8.72□□□□□ -1.01
CD44-215ENST00000525241 SKIP12755 728 aa8.72□□□□□ -1.01
CD44-215ENST00000525241 LAPTM4AQ15012 233 aa8.72□□□□□ -1.01
CD44-215ENST00000525241 TRAF7Q6Q0C0 670 aa8.72□□□□□ -1.01
CD44-215ENST00000525241 CDCA7Q9BWT1 371 aaPredicted RBP8.72□□□□□ -1.01
CD44-215ENST00000525241 IRX2Q9BZI1 471 aaPredicted RBP8.72□□□□□ -1.01
CD44-215ENST00000525241 PCDHB11Q9Y5F2 797 aa8.72□□□□□ -1.01
CD44-215ENST00000525241 EMILIN1Q9Y6C2 1016 aa8.72□□□□□ -1.01
CD44-215ENST00000525241 ATP9BO43861 1147 aa8.71□□□□□ -1.02
CD44-215ENST00000525241 AVPP01185 164 aa8.71□□□□□ -1.02
CD44-215ENST00000525241 MAP7D1Q3KQU3 841 aa8.71□□□□□ -1.02
CD44-215ENST00000525241 SERPINA10Q9UK55 444 aa8.71□□□□□ -1.02
CD44-215ENST00000525241 DGAT1O75907 488 aa8.7□□□□□ -1.02
CD44-215ENST00000525241 TIMP2P16035 220 aa8.7□□□□□ -1.02
CD44-215ENST00000525241 WDR4P57081 412 aaKnown RBP8.7□□□□□ -1.02
CD44-215ENST00000525241 ZNF784Q8NCA9 323 aaPredicted RBP8.7□□□□□ -1.02
CD44-215ENST00000525241 ITPKCQ96DU7 683 aa8.7□□□□□ -1.02
CD44-215ENST00000525241 CCDC97Q96F63 343 aaPredicted RBP8.7□□□□□ -1.02
CD44-215ENST00000525241 DOLKQ9UPQ8 538 aa8.7□□□□□ -1.02
CD44-215ENST00000525241 MAFBQ9Y5Q3 323 aaPredicted RBP8.7□□□□□ -1.02
CD44-215ENST00000525241 USP17L5A8MUK1 530 aa8.69□□□□□ -1.02
CD44-215ENST00000525241 LILRA1O75019 489 aa8.69□□□□□ -1.02
CD44-215ENST00000525241 CFAP70Q5T0N1 1121 aa8.69□□□□□ -1.02
CD44-215ENST00000525241 ZFAND3Q9H8U3 227 aa8.69□□□□□ -1.02
CD44-215ENST00000525241 PGPEP1Q9NXJ5 209 aa8.69□□□□□ -1.02
CD44-215ENST00000525241 ZIC2O95409 532 aaPredicted RBP8.68□□□□□ -1.02
CD44-215ENST00000525241 SCTRP47872 440 aa8.68□□□□□ -1.02
CD44-215ENST00000525241 ERVK-9P63128 1117 aa8.68□□□□□ -1.02
CD44-215ENST00000525241 PKDCCQ504Y2 493 aa8.68□□□□□ -1.02
CD44-215ENST00000525241 PLEKHM2Q8IWE5 1019 aa8.68□□□□□ -1.02
CD44-215ENST00000525241 DEPDC4Q8N2C3 294 aa8.68□□□□□ -1.02
CD44-215ENST00000525241 CYLDQ9NQC7 956 aa8.68□□□□□ -1.02
CD44-215ENST00000525241 USP17L3A6NCW0 530 aa8.67□□□□□ -1.02
CD44-215ENST00000525241 USP17L4A6NCW7 530 aa8.67□□□□□ -1.02
CD44-215ENST00000525241 LZTS3O60299 673 aaPredicted RBP8.67□□□□□ -1.02
CD44-215ENST00000525241 MYT1Q01538 1121 aa8.67□□□□□ -1.02
CD44-215ENST00000525241 NCOA4Q13772 614 aa8.67□□□□□ -1.02
CD44-215ENST00000525241 OXLD1Q5BKU9 147 aa8.67□□□□□ -1.02
CD44-215ENST00000525241 USP17L2Q6R6M4 530 aa8.67□□□□□ -1.02
CD44-215ENST00000525241 USP17L1Q7RTZ2 530 aa8.67□□□□□ -1.02
CD44-215ENST00000525241 LMOD1P29536 600 aaPredicted RBP8.66□□□□□ -1.02
CD44-215ENST00000525241 ADD1P35611 737 aaKnown RBP8.66□□□□□ -1.02
CD44-215ENST00000525241 CC2D2BQ6DHV5 1058 aa8.66□□□□□ -1.02
CD44-215ENST00000525241 CAPN5O15484 640 aaPredicted RBP8.65□□□□□ -1.02
CD44-215ENST00000525241 SMCPP49901 116 aaPredicted RBP8.65□□□□□ -1.02
CD44-215ENST00000525241 USP4Q13107 963 aa8.65□□□□□ -1.02
CD44-215ENST00000525241 CBLBQ13191 982 aa8.65□□□□□ -1.02
CD44-215ENST00000525241 Q6ZVU0 165 aa8.65□□□□□ -1.02
CD44-215ENST00000525241 EML3Q32P44 896 aa8.64□□□□□ -1.03
CD44-215ENST00000525241 CRIPAKQ8N1N5 446 aa8.64□□□□□ -1.03
CD44-215ENST00000525241 TRIM52Q96A61 297 aa8.64□□□□□ -1.03
CD44-215ENST00000525241 OSBPL3Q9H4L5 887 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms