RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 ANKRD36BQ8N2N9 1353 aa10.4□□□□□ -0.74
CSMD1-213ENST00000523488 XRN1Q8IZH2 1706 aaKnown RBP10.4□□□□□ -0.75
CSMD1-213ENST00000523488 TMEM87AQ8NBN3 555 aa10.4□□□□□ -0.75
CSMD1-213ENST00000523488 ZBTB40Q9NUA8 1239 aa10.39□□□□□ -0.75
CSMD1-213ENST00000523488 ZSCAN23Q3MJ62 389 aa10.39□□□□□ -0.75
CSMD1-213ENST00000523488 PPP4R3BQ5MIZ7 849 aa10.39□□□□□ -0.75
CSMD1-213ENST00000523488 LRSAM1Q6UWE0 723 aa10.39□□□□□ -0.75
CSMD1-213ENST00000523488 SSH2Q76I76 1423 aa10.39□□□□□ -0.75
CSMD1-213ENST00000523488 CAMSAP1Q5T5Y3 1602 aa10.39□□□□□ -0.75
CSMD1-213ENST00000523488 CDK11BP21127 795 aaKnown RBP10.38□□□□□ -0.75
CSMD1-213ENST00000523488 DNTTIP2Q5QJE6 756 aaKnown RBP10.38□□□□□ -0.75
CSMD1-213ENST00000523488 PIBF1Q8WXW3 757 aa10.38□□□□□ -0.75
CSMD1-213ENST00000523488 RBSNQ9H1K0 784 aa10.38□□□□□ -0.75
CSMD1-213ENST00000523488 K7ELQ4 463 aaPredicted RBP10.38□□□□□ -0.75
CSMD1-213ENST00000523488 MFAP1P55081 439 aaKnown RBP10.38□□□□□ -0.75
CSMD1-213ENST00000523488 CCDC39Q9UFE4 941 aa10.38□□□□□ -0.75
CSMD1-213ENST00000523488 AATKQ6ZMQ8 1374 aa10.38□□□□□ -0.75
CSMD1-213ENST00000523488 UVSSAQ2YD98 709 aa10.38□□□□□ -0.75
CSMD1-213ENST00000523488 MED1Q15648 1581 aaPredicted RBP10.37□□□□□ -0.75
CSMD1-213ENST00000523488 FEZ1Q99689 392 aa10.37□□□□□ -0.75
CSMD1-213ENST00000523488 CD163L1Q9NR16 1453 aa10.37□□□□□ -0.75
CSMD1-213ENST00000523488 CD2BP2O95400 341 aaKnown RBP10.37□□□□□ -0.75
CSMD1-213ENST00000523488 KCND1Q9NSA2 647 aa10.37□□□□□ -0.75
CSMD1-213ENST00000523488 CFDP1Q9UEE9 299 aaPredicted RBP10.37□□□□□ -0.75
CSMD1-213ENST00000523488 NALCNQ8IZF0 1738 aa10.37□□□□□ -0.75
CSMD1-213ENST00000523488 DIP2AQ14689 1571 aa10.37□□□□□ -0.75
CSMD1-213ENST00000523488 GABPB1Q06547 395 aaPredicted RBP10.36□□□□□ -0.75
CSMD1-213ENST00000523488 NAP1L2Q9ULW6 460 aaPredicted RBP10.36□□□□□ -0.75
CSMD1-213ENST00000523488 MON2Q7Z3U7 1717 aa10.36□□□□□ -0.75
CSMD1-213ENST00000523488 GPT2Q8TD30 523 aa10.36□□□□□ -0.75
CSMD1-213ENST00000523488 PLEKHF1Q96S99 279 aa10.36□□□□□ -0.75
CSMD1-213ENST00000523488 CWC22Q9HCG8 908 aaKnown RBP10.36□□□□□ -0.75
CSMD1-213ENST00000523488 ZDHHC9Q9Y397 364 aa10.36□□□□□ -0.75
CSMD1-213ENST00000523488 FAM208AQ9UK61 1670 aaKnown RBP10.36□□□□□ -0.75
CSMD1-213ENST00000523488 XPCQ01831 940 aaPredicted RBP10.35□□□□□ -0.75
CSMD1-213ENST00000523488 RTL1A6NKG5 1358 aa10.35□□□□□ -0.75
CSMD1-213ENST00000523488 USP54Q70EL1 1684 aa10.35□□□□□ -0.75
CSMD1-213ENST00000523488 ATP7AQ04656 1500 aa10.35□□□□□ -0.75
CSMD1-213ENST00000523488 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.35□□□□□ -0.75
CSMD1-213ENST00000523488 DDX60Q8IY21 1712 aaKnown RBP10.35□□□□□ -0.75
CSMD1-213ENST00000523488 SIGLEC1Q9BZZ2 1709 aa10.35□□□□□ -0.75
CSMD1-213ENST00000523488 AKAP12Q02952 1782 aa10.35□□□□□ -0.75
CSMD1-213ENST00000523488 ZBTB7CA1YPR0 619 aa10.35□□□□□ -0.75
CSMD1-213ENST00000523488 PANK1Q8TE04 598 aa10.35□□□□□ -0.75
CSMD1-213ENST00000523488 CARD14Q9BXL6 1004 aa10.35□□□□□ -0.75
CSMD1-213ENST00000523488 COG6Q9Y2V7 657 aa10.34□□□□□ -0.75
CSMD1-213ENST00000523488 DDX49Q9Y6V7 483 aaKnown RBP10.34□□□□□ -0.75
CSMD1-213ENST00000523488 ERCC6L2Q5T890 1561 aa10.34□□□□□ -0.75
CSMD1-213ENST00000523488 CACNA1FO60840 1977 aa10.34□□□□□ -0.75
CSMD1-213ENST00000523488 RPAP1Q9BWH6 1393 aaPredicted RBP10.34□□□□□ -0.75
CSMD1-213ENST00000523488 PTMAP06454 111 aaKnown RBP10.34□□□□□ -0.75
CSMD1-213ENST00000523488 RUNDC1Q96C34 613 aa10.34□□□□□ -0.75
CSMD1-213ENST00000523488 ZNF428Q96B54 188 aa10.34□□□□□ -0.75
CSMD1-213ENST00000523488 CHMP4BQ9H444 224 aaKnown RBP10.34□□□□□ -0.75
CSMD1-213ENST00000523488 ARHGEF40Q8TER5 1519 aa10.34□□□□□ -0.75
CSMD1-213ENST00000523488 FUCA2Q9BTY2 467 aa10.33□□□□□ -0.76
CSMD1-213ENST00000523488 ATP10DQ9P241 1426 aa10.33□□□□□ -0.76
CSMD1-213ENST00000523488 KIDINS220Q9ULH0 1771 aa10.33□□□□□ -0.76
CSMD1-213ENST00000523488 ATP2B3Q16720 1220 aa10.33□□□□□ -0.76
CSMD1-213ENST00000523488 RGS12O14924 1447 aa10.33□□□□□ -0.76
CSMD1-213ENST00000523488 FAM135BQ49AJ0 1406 aa10.33□□□□□ -0.76
CSMD1-213ENST00000523488 EPB41L2O43491 1005 aaKnown RBP10.33□□□□□ -0.76
CSMD1-213ENST00000523488 ALDH1L2Q3SY69 923 aa10.33□□□□□ -0.76
CSMD1-213ENST00000523488 MORC2Q9Y6X9 1032 aaPredicted RBP10.33□□□□□ -0.76
CSMD1-213ENST00000523488 CPSF1Q10570 1443 aaKnown RBP10.32□□□□□ -0.76
CSMD1-213ENST00000523488 APAF1O14727 1248 aa10.32□□□□□ -0.76
CSMD1-213ENST00000523488 NUCB2P80303 420 aa10.32□□□□□ -0.76
CSMD1-213ENST00000523488 GAS2L2Q8NHY3 880 aa10.32□□□□□ -0.76
CSMD1-213ENST00000523488 CFAP44Q96MT7 982 aa10.32□□□□□ -0.76
CSMD1-213ENST00000523488 FOXD4L1Q9NU39 408 aa10.32□□□□□ -0.76
CSMD1-213ENST00000523488 CUL4AQ13619 759 aa10.32□□□□□ -0.76
CSMD1-213ENST00000523488 ARHGAP45Q92619 1136 aa10.32□□□□□ -0.76
CSMD1-213ENST00000523488 CBX1P83916 185 aa10.31□□□□□ -0.76
CSMD1-213ENST00000523488 TMEM131LA2VDJ0 1609 aa10.31□□□□□ -0.76
CSMD1-213ENST00000523488 SLFN14P0C7P3 912 aa10.31□□□□□ -0.76
CSMD1-213ENST00000523488 ABCC4O15439 1325 aa10.31□□□□□ -0.76
CSMD1-213ENST00000523488 TCHHQ07283 1943 aa10.3□□□□□ -0.76
CSMD1-213ENST00000523488 DDX19BQ9UMR2 479 aa10.3□□□□□ -0.76
CSMD1-213ENST00000523488 ADGRL3Q9HAR2 1447 aa10.3□□□□□ -0.76
CSMD1-213ENST00000523488 ZFYVE9O95405 1425 aa10.3□□□□□ -0.76
CSMD1-213ENST00000523488 USP25Q9UHP3 1055 aa10.3□□□□□ -0.76
CSMD1-213ENST00000523488 SSFA2P28290 1259 aa10.3□□□□□ -0.76
CSMD1-213ENST00000523488 PRIM1P49642 420 aaKnown RBP10.3□□□□□ -0.76
CSMD1-213ENST00000523488 RIMBP3CA6NJZ7 1639 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 RIMBP3BA6NNM3 1639 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 RIMBP3Q9UFD9 1639 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 FAM184AQ8NB25 1140 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 GCC1Q96CN9 775 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 KNSTRNQ9Y448 316 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 RABEP1Q15276 862 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 C3P01024 1663 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 OGFRQ9NZT2 677 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 TMEM63CQ9P1W3 806 aa10.29□□□□□ -0.76
CSMD1-213ENST00000523488 MMP14P50281 582 aa10.28□□□□□ -0.76
CSMD1-213ENST00000523488 SLFNL1Q499Z3 407 aa10.28□□□□□ -0.76
CSMD1-213ENST00000523488 YY1AP1Q9H869 796 aa10.28□□□□□ -0.76
CSMD1-213ENST00000523488 TNNQ9UQP3 1299 aa10.28□□□□□ -0.76
CSMD1-213ENST00000523488 CEP170BQ9Y4F5 1589 aaPredicted RBP10.28□□□□□ -0.76
CSMD1-213ENST00000523488 ARHGAP5Q13017 1502 aa10.28□□□□□ -0.76
CSMD1-213ENST00000523488 CCDC146Q8IYE0 955 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms