RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 COL5A2P05997 1499 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-215ENST00000519474 COL18A1P39060 1754 aa13.07□□□□□ -0.32
HDAC3-215ENST00000519474 EDC4Q6P2E9 1401 aaKnown RBP13.07□□□□□ -0.32
HDAC3-215ENST00000519474 FYB1O15117 783 aa13.07□□□□□ -0.32
HDAC3-215ENST00000519474 PDE3BQ13370 1112 aa13.07□□□□□ -0.32
HDAC3-215ENST00000519474 SF3B2Q13435 895 aaKnown RBP13.07□□□□□ -0.32
HDAC3-215ENST00000519474 FAM196AQ6ZSG2 479 aa13.07□□□□□ -0.32
HDAC3-215ENST00000519474 WDR17Q8IZU2 1322 aa13.07□□□□□ -0.32
HDAC3-215ENST00000519474 CRB1P82279 1406 aa13.06□□□□□ -0.32
HDAC3-215ENST00000519474 CDCA8Q53HL2 280 aa13.06□□□□□ -0.32
HDAC3-215ENST00000519474 CARD10Q9BWT7 1032 aa13.06□□□□□ -0.32
HDAC3-215ENST00000519474 NINLQ9Y2I6 1382 aa13.06□□□□□ -0.32
HDAC3-215ENST00000519474 TRIM37O94972 964 aa13.05□□□□□ -0.32
HDAC3-215ENST00000519474 CARD14Q9BXL6 1004 aa13.05□□□□□ -0.32
HDAC3-215ENST00000519474 MON2Q7Z3U7 1717 aa13.05□□□□□ -0.32
HDAC3-215ENST00000519474 CSB-PGBD3P0DP91 1061 aa13.04□□□□□ -0.32
HDAC3-215ENST00000519474 EN1Q05925 392 aaPredicted RBP13.04□□□□□ -0.32
HDAC3-215ENST00000519474 IP6K1Q92551 441 aa13.04□□□□□ -0.32
HDAC3-215ENST00000519474 COG3Q96JB2 828 aa13.04□□□□□ -0.32
HDAC3-215ENST00000519474 THSD7AQ9UPZ6 1657 aa13.04□□□□□ -0.32
HDAC3-215ENST00000519474 ANKRD36BQ8N2N9 1353 aa13.04□□□□□ -0.32
HDAC3-215ENST00000519474 HSPA5P11021 654 aaKnown RBP13.03□□□□□ -0.32
HDAC3-215ENST00000519474 BAG6P46379 1132 aa13.03□□□□□ -0.32
HDAC3-215ENST00000519474 GGNBP2Q9H3C7 697 aa13.03□□□□□ -0.32
HDAC3-215ENST00000519474 NFAT5O94916 1531 aa13.03□□□□□ -0.32
HDAC3-215ENST00000519474 EIF4G2P78344 907 aaKnown RBP eCLIP13.02□□□□□ -0.33
HDAC3-215ENST00000519474 RGPD5Q99666 1765 aa13.02□□□□□ -0.33
HDAC3-215ENST00000519474 EXOC5O00471 708 aa13.01□□□□□ -0.33
HDAC3-215ENST00000519474 DDB1Q16531 1140 aa13.01□□□□□ -0.33
HDAC3-215ENST00000519474 ANKRD24Q8TF21 1146 aa13.01□□□□□ -0.33
HDAC3-215ENST00000519474 CAMKK2Q96RR4 588 aa13.01□□□□□ -0.33
HDAC3-215ENST00000519474 CDCA7Q9BWT1 371 aaPredicted RBP13.01□□□□□ -0.33
HDAC3-215ENST00000519474 OVOS2A0A0J9YW53 1432 aa13.01□□□□□ -0.33
HDAC3-215ENST00000519474 OVOS2Q6IE36 1432 aa13.01□□□□□ -0.33
HDAC3-215ENST00000519474 C11orf95C9JLR9 678 aaPredicted RBP13□□□□□ -0.33
HDAC3-215ENST00000519474 APBA3O96018 575 aa13□□□□□ -0.33
HDAC3-215ENST00000519474 EZH2Q15910 746 aaKnown RBP13□□□□□ -0.33
HDAC3-215ENST00000519474 MARCH10Q8NA82 808 aaPredicted RBP13□□□□□ -0.33
HDAC3-215ENST00000519474 NLRP2Q9NX02 1062 aa13□□□□□ -0.33
HDAC3-215ENST00000519474 ERBB3P21860 1342 aa12.99□□□□□ -0.33
HDAC3-215ENST00000519474 MAP3K19Q56UN5 1328 aa12.99□□□□□ -0.33
HDAC3-215ENST00000519474 HOXC9P31274 260 aa12.98□□□□□ -0.33
HDAC3-215ENST00000519474 AMPHP49418 695 aa12.98□□□□□ -0.33
HDAC3-215ENST00000519474 RRS1Q15050 365 aaKnown RBP12.98□□□□□ -0.33
HDAC3-215ENST00000519474 PTF1AQ7RTS3 328 aa12.98□□□□□ -0.33
HDAC3-215ENST00000519474 CCDC7Q96M83 1385 aa12.97□□□□□ -0.33
HDAC3-215ENST00000519474 USP54Q70EL1 1684 aa12.97□□□□□ -0.33
HDAC3-215ENST00000519474 LTV1Q96GA3 475 aaPredicted RBP12.97□□□□□ -0.33
HDAC3-215ENST00000519474 POLR3GLQ9BT43 218 aa12.97□□□□□ -0.33
HDAC3-215ENST00000519474 DISP2A7MBM2 1401 aa12.96□□□□□ -0.33
HDAC3-215ENST00000519474 IL2RBP14784 551 aa12.95□□□□□ -0.34
HDAC3-215ENST00000519474 BCL11BQ9C0K0 894 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-215ENST00000519474 EP400Q96L91 3159 aa12.94□□□□□ -0.34
HDAC3-215ENST00000519474 PLSCR1O15162 318 aa12.94□□□□□ -0.34
HDAC3-215ENST00000519474 PANK3Q9H999 370 aa12.94□□□□□ -0.34
HDAC3-215ENST00000519474 PARP4Q9UKK3 1724 aaKnown RBP12.93□□□□□ -0.34
HDAC3-215ENST00000519474 ABCC6O95255 1503 aa12.93□□□□□ -0.34
HDAC3-215ENST00000519474 PSDA5PKW4 1024 aaPredicted RBP12.93□□□□□ -0.34
HDAC3-215ENST00000519474 KCNQ2O43526 872 aa12.93□□□□□ -0.34
HDAC3-215ENST00000519474 HSP90AB2PQ58FF8 381 aa12.93□□□□□ -0.34
HDAC3-215ENST00000519474 NBPF6Q5VWK0 638 aa12.93□□□□□ -0.34
HDAC3-215ENST00000519474 PROM2Q8N271 834 aa12.93□□□□□ -0.34
HDAC3-215ENST00000519474 NBPF4Q96M43 638 aa12.93□□□□□ -0.34
HDAC3-215ENST00000519474 LTN1O94822 1766 aa12.92□□□□□ -0.34
HDAC3-215ENST00000519474 OVOS2A0A0G2JMS6 1433 aa12.91□□□□□ -0.34
HDAC3-215ENST00000519474 BCL9O00512 1426 aa12.91□□□□□ -0.34
HDAC3-215ENST00000519474 NSD3Q9BZ95 1437 aa12.91□□□□□ -0.34
HDAC3-215ENST00000519474 R3HDM1Q15032 1099 aaKnown RBP12.91□□□□□ -0.34
HDAC3-215ENST00000519474 EMILIN1Q9Y6C2 1016 aa12.91□□□□□ -0.34
HDAC3-215ENST00000519474 RGPD1P0DJD0 1748 aa12.91□□□□□ -0.34
HDAC3-215ENST00000519474 DDX54Q8TDD1 881 aaKnown RBP12.9□□□□□ -0.34
HDAC3-215ENST00000519474 ACSBG1Q96GR2 724 aa12.9□□□□□ -0.34
HDAC3-215ENST00000519474 POLKQ9UBT6 870 aa12.9□□□□□ -0.34
HDAC3-215ENST00000519474 PEAK1Q9H792 1746 aa12.9□□□□□ -0.34
HDAC3-215ENST00000519474 CGNL1Q0VF96 1302 aa12.89□□□□□ -0.35
HDAC3-215ENST00000519474 PRKCSHP14314 528 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-215ENST00000519474 LRRC37A3O60309 1634 aa12.88□□□□□ -0.35
HDAC3-215ENST00000519474 TNS1Q9HBL0 1735 aaKnown RBP12.88□□□□□ -0.35
HDAC3-215ENST00000519474 USHBP1Q8N6Y0 703 aa12.88□□□□□ -0.35
HDAC3-215ENST00000519474 ZCRB1Q8TBF4 217 aaKnown RBP12.88□□□□□ -0.35
HDAC3-215ENST00000519474 INSRP06213 1382 aa12.88□□□□□ -0.35
HDAC3-215ENST00000519474 PARD3Q8TEW0 1356 aa12.88□□□□□ -0.35
HDAC3-215ENST00000519474 MYOM1P52179 1685 aa12.87□□□□□ -0.35
HDAC3-215ENST00000519474 PPM1GO15355 546 aaPredicted RBP12.87□□□□□ -0.35
HDAC3-215ENST00000519474 NBPF14Q5TI25 921 aa12.87□□□□□ -0.35
HDAC3-215ENST00000519474 WASHC2AQ641Q2 1341 aa12.87□□□□□ -0.35
HDAC3-215ENST00000519474 SBF2Q86WG5 1849 aa12.86□□□□□ -0.35
HDAC3-215ENST00000519474 RTL1A6NKG5 1358 aa12.86□□□□□ -0.35
HDAC3-215ENST00000519474 KIF24Q5T7B8 1368 aa12.86□□□□□ -0.35
HDAC3-215ENST00000519474 TNNT2P45379 298 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-215ENST00000519474 TNS2Q63HR2 1409 aa12.86□□□□□ -0.35
HDAC3-215ENST00000519474 FLT4P35916 1363 aa12.85□□□□□ -0.35
HDAC3-215ENST00000519474 PER1O15534 1290 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-215ENST00000519474 TXNRD1Q16881 649 aa12.85□□□□□ -0.35
HDAC3-215ENST00000519474 KIF7Q2M1P5 1343 aa12.85□□□□□ -0.35
HDAC3-215ENST00000519474 PRIM1P49642 420 aaKnown RBP12.84□□□□□ -0.35
HDAC3-215ENST00000519474 EYA1Q99502 592 aa12.84□□□□□ -0.35
HDAC3-215ENST00000519474 RGPD2P0DJD1 1756 aa12.84□□□□□ -0.35
HDAC3-215ENST00000519474 WNK3Q9BYP7 1800 aa12.83□□□□□ -0.35
HDAC3-215ENST00000519474 TATP17735 454 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms