RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 PIK3C2AO00443 1686 aa13.79□□□□□ -0.2
NEDD9-214ENST00000513989 CHRNA2Q15822 529 aa13.78□□□□□ -0.2
NEDD9-214ENST00000513989 AMER1Q5JTC6 1135 aaPredicted RBP13.78□□□□□ -0.2
NEDD9-214ENST00000513989 CC2D1BQ5T0F9 858 aaKnown RBP13.78□□□□□ -0.2
NEDD9-214ENST00000513989 FAM182BQ5T319 152 aa13.78□□□□□ -0.2
NEDD9-214ENST00000513989 PRDM11Q9NQV5 511 aa13.78□□□□□ -0.2
NEDD9-214ENST00000513989 CD163L1Q9NR16 1453 aa13.78□□□□□ -0.2
NEDD9-214ENST00000513989 COL18A1P39060 1754 aa13.78□□□□□ -0.2
NEDD9-214ENST00000513989 RGPD5Q99666 1765 aa13.78□□□□□ -0.2
NEDD9-214ENST00000513989 WNK3Q9BYP7 1800 aa13.78□□□□□ -0.2
NEDD9-214ENST00000513989 NSD2O96028 1365 aa13.77□□□□□ -0.21
NEDD9-214ENST00000513989 CNGB1Q14028 1251 aaPredicted RBP13.77□□□□□ -0.21
NEDD9-214ENST00000513989 SPATA31A1Q5TZJ5 1347 aa13.77□□□□□ -0.21
NEDD9-214ENST00000513989 NME9Q86XW9 330 aa13.77□□□□□ -0.21
NEDD9-214ENST00000513989 GGNBP2Q9H3C7 697 aa13.77□□□□□ -0.21
NEDD9-214ENST00000513989 PARP4Q9UKK3 1724 aaKnown RBP13.76□□□□□ -0.21
NEDD9-214ENST00000513989 RREB1Q92766 1687 aa13.76□□□□□ -0.21
NEDD9-214ENST00000513989 NPC1L1Q9UHC9 1359 aa13.76□□□□□ -0.21
NEDD9-214ENST00000513989 USP19O94966 1318 aa13.76□□□□□ -0.21
NEDD9-214ENST00000513989 RALBP1Q15311 655 aa13.76□□□□□ -0.21
NEDD9-214ENST00000513989 KCNH5Q8NCM2 988 aa13.76□□□□□ -0.21
NEDD9-214ENST00000513989 SBF2Q86WG5 1849 aa13.76□□□□□ -0.21
NEDD9-214ENST00000513989 DISP2A7MBM2 1401 aa13.75□□□□□ -0.21
NEDD9-214ENST00000513989 SSH2Q76I76 1423 aa13.75□□□□□ -0.21
NEDD9-214ENST00000513989 ZC3H6P61129 1189 aaKnown RBP13.75□□□□□ -0.21
NEDD9-214ENST00000513989 CPDO75976 1380 aa13.74□□□□□ -0.21
NEDD9-214ENST00000513989 NUP188Q5SRE5 1749 aa13.74□□□□□ -0.21
NEDD9-214ENST00000513989 A0A0G2JS52 829 aa13.74□□□□□ -0.21
NEDD9-214ENST00000513989 MYT1Q01538 1121 aa13.74□□□□□ -0.21
NEDD9-214ENST00000513989 SLIT3O75094 1523 aa13.74□□□□□ -0.21
NEDD9-214ENST00000513989 PEAK1Q9H792 1746 aa13.73□□□□□ -0.21
NEDD9-214ENST00000513989 USP31Q70CQ4 1352 aa13.73□□□□□ -0.21
NEDD9-214ENST00000513989 SF3B2Q13435 895 aaKnown RBP13.73□□□□□ -0.21
NEDD9-214ENST00000513989 COL5A2P05997 1499 aaPredicted RBP13.72□□□□□ -0.21
NEDD9-214ENST00000513989 LRRC37A3O60309 1634 aa13.72□□□□□ -0.21
NEDD9-214ENST00000513989 MON2Q7Z3U7 1717 aa13.71□□□□□ -0.21
NEDD9-214ENST00000513989 GCP02774 474 aa13.71□□□□□ -0.21
NEDD9-214ENST00000513989 TNNT2P45379 298 aaPredicted RBP13.71□□□□□ -0.21
NEDD9-214ENST00000513989 EN1Q05925 392 aaPredicted RBP13.71□□□□□ -0.21
NEDD9-214ENST00000513989 STRN4Q9NRL3 753 aa13.71□□□□□ -0.21
NEDD9-214ENST00000513989 SOX12O15370 315 aa13.7□□□□□ -0.22
NEDD9-214ENST00000513989 BAG6P46379 1132 aa13.7□□□□□ -0.22
NEDD9-214ENST00000513989 LARP1Q6PKG0 1096 aaKnown RBP13.7□□□□□ -0.22
NEDD9-214ENST00000513989 PRKRIP1Q9H875 184 aaPredicted RBP13.7□□□□□ -0.22
NEDD9-214ENST00000513989 PSDA5PKW4 1024 aaPredicted RBP13.69□□□□□ -0.22
NEDD9-214ENST00000513989 BARGINQ6ZT62 677 aa13.69□□□□□ -0.22
NEDD9-214ENST00000513989 USP54Q70EL1 1684 aa13.69□□□□□ -0.22
NEDD9-214ENST00000513989 USP35Q9P2H5 1018 aa13.68□□□□□ -0.22
NEDD9-214ENST00000513989 PPM1GO15355 546 aaPredicted RBP13.67□□□□□ -0.22
NEDD9-214ENST00000513989 AMPHP49418 695 aa13.67□□□□□ -0.22
NEDD9-214ENST00000513989 RGPD3A6NKT7 1758 aaPredicted RBP13.67□□□□□ -0.22
NEDD9-214ENST00000513989 RGPD4Q7Z3J3 1758 aa13.67□□□□□ -0.22
NEDD9-214ENST00000513989 NFAT5O94916 1531 aa13.66□□□□□ -0.22
NEDD9-214ENST00000513989 TRIM37O94972 964 aa13.66□□□□□ -0.22
NEDD9-214ENST00000513989 EZH2Q15910 746 aaKnown RBP13.66□□□□□ -0.22
NEDD9-214ENST00000513989 CFAP53Q96M91 514 aa13.66□□□□□ -0.22
NEDD9-214ENST00000513989 CAMKK2Q96RR4 588 aa13.66□□□□□ -0.22
NEDD9-214ENST00000513989 MYOM1P52179 1685 aa13.66□□□□□ -0.22
NEDD9-214ENST00000513989 LTN1O94822 1766 aa13.66□□□□□ -0.22
NEDD9-214ENST00000513989 MYBBP1AQ9BQG0 1328 aaKnown RBP13.65□□□□□ -0.22
NEDD9-214ENST00000513989 ZBTB7CA1YPR0 619 aa13.65□□□□□ -0.22
NEDD9-214ENST00000513989 PPP2R1AP30153 589 aa13.65□□□□□ -0.22
NEDD9-214ENST00000513989 MTHFSP49914 203 aa13.65□□□□□ -0.22
NEDD9-214ENST00000513989 FAM196AQ6ZSG2 479 aa13.65□□□□□ -0.22
NEDD9-214ENST00000513989 TCP11L2Q8N4U5 519 aa13.65□□□□□ -0.22
NEDD9-214ENST00000513989 AATKQ6ZMQ8 1374 aa13.65□□□□□ -0.22
NEDD9-214ENST00000513989 CRB1P82279 1406 aa13.64□□□□□ -0.23
NEDD9-214ENST00000513989 PARD3Q8TEW0 1356 aa13.64□□□□□ -0.23
NEDD9-214ENST00000513989 EVA1CP58658 441 aa13.64□□□□□ -0.23
NEDD9-214ENST00000513989 ARHGEF25Q86VW2 580 aa13.64□□□□□ -0.23
NEDD9-214ENST00000513989 POLKQ9UBT6 870 aa13.64□□□□□ -0.23
NEDD9-214ENST00000513989 RRS1Q15050 365 aaKnown RBP13.63□□□□□ -0.23
NEDD9-214ENST00000513989 OVOS2A0A0J9YW53 1432 aa13.63□□□□□ -0.23
NEDD9-214ENST00000513989 OVOS2Q6IE36 1432 aa13.63□□□□□ -0.23
NEDD9-214ENST00000513989 FBLN1P23142 703 aa13.62□□□□□ -0.23
NEDD9-214ENST00000513989 R3HDM1Q15032 1099 aaKnown RBP13.62□□□□□ -0.23
NEDD9-214ENST00000513989 IP6K1Q92551 441 aa13.62□□□□□ -0.23
NEDD9-214ENST00000513989 AXIN2Q9Y2T1 843 aa13.62□□□□□ -0.23
NEDD9-214ENST00000513989 THRAP3Q9Y2W1 955 aaKnown RBP13.62□□□□□ -0.23
NEDD9-214ENST00000513989 KIF24Q5T7B8 1368 aa13.61□□□□□ -0.23
NEDD9-214ENST00000513989 NUDCQ9Y266 331 aa13.61□□□□□ -0.23
NEDD9-214ENST00000513989 MAP3K19Q56UN5 1328 aa13.61□□□□□ -0.23
NEDD9-214ENST00000513989 APBA3O96018 575 aa13.6□□□□□ -0.23
NEDD9-214ENST00000513989 PDE3BQ13370 1112 aa13.6□□□□□ -0.23
NEDD9-214ENST00000513989 EMILIN1Q9Y6C2 1016 aa13.6□□□□□ -0.23
NEDD9-214ENST00000513989 ABCC6O95255 1503 aa13.59□□□□□ -0.23
NEDD9-214ENST00000513989 CASZ1Q86V15 1759 aa13.59□□□□□ -0.23
NEDD9-214ENST00000513989 CCER2I3L3R5 266 aa13.59□□□□□ -0.23
NEDD9-214ENST00000513989 MIER1Q8N108 512 aa13.59□□□□□ -0.23
NEDD9-214ENST00000513989 OVOS2A0A0G2JMS6 1433 aa13.58□□□□□ -0.24
NEDD9-214ENST00000513989 DIAPH1O60610 1272 aaKnown RBP13.58□□□□□ -0.24
NEDD9-214ENST00000513989 HOXC9P31274 260 aa13.58□□□□□ -0.24
NEDD9-214ENST00000513989 WDR17Q8IZU2 1322 aa13.58□□□□□ -0.24
NEDD9-214ENST00000513989 FLT4P35916 1363 aa13.58□□□□□ -0.24
NEDD9-214ENST00000513989 CSB-PGBD3P0DP91 1061 aa13.57□□□□□ -0.24
NEDD9-214ENST00000513989 HSP90AB2PQ58FF8 381 aa13.57□□□□□ -0.24
NEDD9-214ENST00000513989 PTF1AQ7RTS3 328 aa13.57□□□□□ -0.24
NEDD9-214ENST00000513989 MRS2Q9HD23 443 aa13.57□□□□□ -0.24
NEDD9-214ENST00000513989 KAT6BQ8WYB5 2073 aa13.56□□□□□ -0.24
NEDD9-214ENST00000513989 RTL1A6NKG5 1358 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms