RNA–Protein interactions for RNA: ENST00000496050.1

SSR3-208, Transcript of signal sequence receptor subunit 3, humanhuman

TSL 4 BASIC

Gene SSR3, Length 579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-208ENST00000496050 CHIC2Q9UKJ5 165 aa9.73□□□□□ -0.85
SSR3-208ENST00000496050 ITGBL1O95965 494 aaPredicted RBP9.72□□□□□ -0.85
SSR3-208ENST00000496050 ERFEQ4G0M1 354 aa9.72□□□□□ -0.85
SSR3-208ENST00000496050 LARP1Q6PKG0 1096 aaKnown RBP9.72□□□□□ -0.85
SSR3-208ENST00000496050 CDV3Q9UKY7 258 aaKnown RBP9.72□□□□□ -0.85
SSR3-208ENST00000496050 ATP5J2-PTCD1G3V325 749 aa9.71□□□□□ -0.86
SSR3-208ENST00000496050 PPEF1O14829 653 aaPredicted RBP9.71□□□□□ -0.86
SSR3-208ENST00000496050 BRD1O95696 1058 aa9.71□□□□□ -0.86
SSR3-208ENST00000496050 NCOA4Q13772 614 aa9.71□□□□□ -0.86
SSR3-208ENST00000496050 EML3Q32P44 896 aa9.71□□□□□ -0.86
SSR3-208ENST00000496050 CCDC125Q86Z20 511 aa9.71□□□□□ -0.86
SSR3-208ENST00000496050 ANKLE1Q8NAG6 615 aa9.71□□□□□ -0.86
SSR3-208ENST00000496050 RNF166Q96A37 237 aaPredicted RBP9.71□□□□□ -0.86
SSR3-208ENST00000496050 RNF223E7ERA6 249 aa9.7□□□□□ -0.86
SSR3-208ENST00000496050 GIGYF1O75420 1035 aaPredicted RBP9.7□□□□□ -0.86
SSR3-208ENST00000496050 RASA1P20936 1047 aa9.7□□□□□ -0.86
SSR3-208ENST00000496050 SH3BP2P78314 561 aa9.7□□□□□ -0.86
SSR3-208ENST00000496050 SLC10A4Q96EP9 437 aa9.7□□□□□ -0.86
SSR3-208ENST00000496050 FAM196BA6NMK8 535 aa9.69□□□□□ -0.86
SSR3-208ENST00000496050 NBPF20Q3BBV1 942 aa9.69□□□□□ -0.86
SSR3-208ENST00000496050 C4orf48Q5BLP8 95 aa9.69□□□□□ -0.86
SSR3-208ENST00000496050 TRIM50Q86XT4 487 aa9.69□□□□□ -0.86
SSR3-208ENST00000496050 NOD1Q9Y239 953 aa9.69□□□□□ -0.86
SSR3-208ENST00000496050 TSGA10IPQ3SY00 556 aa9.68□□□□□ -0.86
SSR3-208ENST00000496050 DOLKQ9UPQ8 538 aa9.68□□□□□ -0.86
SSR3-208ENST00000496050 CD2BP2O95400 341 aaKnown RBP9.67□□□□□ -0.86
SSR3-208ENST00000496050 VARSP26640 1264 aaKnown RBP9.67□□□□□ -0.86
SSR3-208ENST00000496050 ATP1A2P50993 1020 aa9.67□□□□□ -0.86
SSR3-208ENST00000496050 WNT7BP56706 349 aa9.67□□□□□ -0.86
SSR3-208ENST00000496050 TRIM32Q13049 653 aa9.67□□□□□ -0.86
SSR3-208ENST00000496050 TRAF7Q6Q0C0 670 aa9.67□□□□□ -0.86
SSR3-208ENST00000496050 TRMT44Q8IYL2 757 aaKnown RBP9.67□□□□□ -0.86
SSR3-208ENST00000496050 SEPT12Q8IYM1 358 aa9.67□□□□□ -0.86
SSR3-208ENST00000496050 FAM200AQ8TCP9 573 aa9.67□□□□□ -0.86
SSR3-208ENST00000496050 SIRT1Q96EB6 747 aa9.67□□□□□ -0.86
SSR3-208ENST00000496050 CDCA7Q9BWT1 371 aaPredicted RBP9.67□□□□□ -0.86
SSR3-208ENST00000496050 C1QTNF2Q9BXJ5 285 aa9.67□□□□□ -0.86
SSR3-208ENST00000496050 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.67□□□□□ -0.86
SSR3-208ENST00000496050 NOVA2Q9UNW9 492 aaKnown RBP9.67□□□□□ -0.86
SSR3-208ENST00000496050 TMEM88BA6NKF7 163 aa9.66□□□□□ -0.86
SSR3-208ENST00000496050 RPIAP49247 311 aa9.66□□□□□ -0.86
SSR3-208ENST00000496050 KCNA1Q09470 495 aa9.66□□□□□ -0.86
SSR3-208ENST00000496050 USP4Q13107 963 aa9.66□□□□□ -0.86
SSR3-208ENST00000496050 SPNS2Q8IVW8 549 aa9.66□□□□□ -0.86
SSR3-208ENST00000496050 CCDC85AQ96PX6 553 aaPredicted RBP9.66□□□□□ -0.86
SSR3-208ENST00000496050 CCDC9Q9Y3X0 531 aaKnown RBP9.66□□□□□ -0.86
SSR3-208ENST00000496050 CARNS1A5YM72 827 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L15C9J2P7 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L10C9JJH3 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L13C9JLJ4 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L12C9JPN9 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L11C9JVI0 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L21D6R901 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L18D6R9N7 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L22D6RA61 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L17D6RBQ6 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L19D6RCP7 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L20D6RJB6 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 USP17L24Q0WX57 530 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 PTK7Q13308 1070 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 B4GALNT3Q6L9W6 998 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 PPP1R18Q6NYC8 613 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 OGFOD1Q8N543 542 aa9.65□□□□□ -0.86
SSR3-208ENST00000496050 ESPNB1AK53 854 aa9.64□□□□□ -0.87
SSR3-208ENST00000496050 CRTC2Q53ET0 693 aaPredicted RBP9.64□□□□□ -0.87
SSR3-208ENST00000496050 OXLD1Q5BKU9 147 aa9.64□□□□□ -0.87
SSR3-208ENST00000496050 LARGE2Q8N3Y3 721 aa9.64□□□□□ -0.87
SSR3-208ENST00000496050 DNAAF2Q9NVR5 837 aaKnown RBP9.64□□□□□ -0.87
SSR3-208ENST00000496050 TMEM164Q5U3C3 297 aa9.63□□□□□ -0.87
SSR3-208ENST00000496050 ANKMY2Q8IV38 441 aa9.63□□□□□ -0.87
SSR3-208ENST00000496050 TRIM52Q96A61 297 aa9.63□□□□□ -0.87
SSR3-208ENST00000496050 KCTD15Q96SI1 283 aaPredicted RBP9.63□□□□□ -0.87
SSR3-208ENST00000496050 GZF1Q9H116 711 aaPredicted RBP9.63□□□□□ -0.87
SSR3-208ENST00000496050 ZMIZ1Q9ULJ6 1067 aa9.63□□□□□ -0.87
SSR3-208ENST00000496050 RBM19Q9Y4C8 960 aaKnown RBP9.63□□□□□ -0.87
SSR3-208ENST00000496050 PLA2G2CQ5R387 149 aa9.62□□□□□ -0.87
SSR3-208ENST00000496050 PCDHB11Q9Y5F2 797 aa9.62□□□□□ -0.87
SSR3-208ENST00000496050 VASH1Q7L8A9 365 aaPredicted RBP9.61□□□□□ -0.87
SSR3-208ENST00000496050 STK32AQ8WU08 396 aa9.61□□□□□ -0.87
SSR3-208ENST00000496050 ESF1Q9H501 851 aaKnown RBP9.61□□□□□ -0.87
SSR3-208ENST00000496050 ZBTB7BO15156 539 aaPredicted RBP9.6□□□□□ -0.87
SSR3-208ENST00000496050 SKOR1P84550 965 aa9.6□□□□□ -0.87
SSR3-208ENST00000496050 DPYDQ12882 1025 aa9.6□□□□□ -0.87
SSR3-208ENST00000496050 EHBP1Q8NDI1 1231 aa9.6□□□□□ -0.87
SSR3-208ENST00000496050 MAP4K5Q9Y4K4 846 aa9.6□□□□□ -0.87
SSR3-208ENST00000496050 GTF2IP78347 998 aa9.59□□□□□ -0.87
SSR3-208ENST00000496050 CLDN10P78369 228 aa9.59□□□□□ -0.87
SSR3-208ENST00000496050 RC3H1Q5TC82 1133 aaKnown RBP9.59□□□□□ -0.87
SSR3-208ENST00000496050 ZNF594Q96JF6 807 aaPredicted RBP9.59□□□□□ -0.87
SSR3-208ENST00000496050 MYCP01106 439 aaPredicted RBP9.58□□□□□ -0.88
SSR3-208ENST00000496050 RAB15P59190 212 aa9.58□□□□□ -0.88
SSR3-208ENST00000496050 ARID5BQ14865 1188 aa9.58□□□□□ -0.88
SSR3-208ENST00000496050 SWI5Q1ZZU3 235 aa9.57□□□□□ -0.88
SSR3-208ENST00000496050 TMCO4Q5TGY1 634 aa9.57□□□□□ -0.88
SSR3-208ENST00000496050 CCDC102BQ68D86 513 aa9.57□□□□□ -0.88
SSR3-208ENST00000496050 PCDHGA11Q9Y5H2 935 aa9.57□□□□□ -0.88
SSR3-208ENST00000496050 SEC13P55735 322 aa9.56□□□□□ -0.88
SSR3-208ENST00000496050 PSME1Q06323 249 aa9.56□□□□□ -0.88
SSR3-208ENST00000496050 SIX5Q8N196 739 aa9.56□□□□□ -0.88
SSR3-208ENST00000496050 MPNDQ8N594 471 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms