RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 PEAK1Q9H792 1746 aa20.48■□□□□ 0.87
VARS-228ENST00000495010 ZNF692Q9BU19 519 aaPredicted RBP20.48■□□□□ 0.87
VARS-228ENST00000495010 SOX12O15370 315 aa20.47■□□□□ 0.87
VARS-228ENST00000495010 AXIN2Q9Y2T1 843 aa20.47■□□□□ 0.87
VARS-228ENST00000495010 RGPD3A6NKT7 1758 aaPredicted RBP20.46■□□□□ 0.87
VARS-228ENST00000495010 RGPD4Q7Z3J3 1758 aa20.46■□□□□ 0.87
VARS-228ENST00000495010 MARCH10Q8NA82 808 aaPredicted RBP20.46■□□□□ 0.87
VARS-228ENST00000495010 SBF2Q86WG5 1849 aa20.46■□□□□ 0.87
VARS-228ENST00000495010 CPSF1Q10570 1443 aaKnown RBP20.45■□□□□ 0.86
VARS-228ENST00000495010 TTC21BQ7Z4L5 1316 aa20.45■□□□□ 0.86
VARS-228ENST00000495010 PIK3C2AO00443 1686 aa20.45■□□□□ 0.86
VARS-228ENST00000495010 EXOC5O00471 708 aa20.44■□□□□ 0.86
VARS-228ENST00000495010 ARHGEF25Q86VW2 580 aa20.44■□□□□ 0.86
VARS-228ENST00000495010 CARD10Q9BWT7 1032 aa20.44■□□□□ 0.86
VARS-228ENST00000495010 ANO8Q9HCE9 1232 aaPredicted RBP20.44■□□□□ 0.86
VARS-228ENST00000495010 PTF1AQ7RTS3 328 aa20.43■□□□□ 0.86
VARS-228ENST00000495010 L3MBTL2Q969R5 705 aa20.43■□□□□ 0.86
VARS-228ENST00000495010 STK32BQ9NY57 414 aa20.43■□□□□ 0.86
VARS-228ENST00000495010 TTC21AQ8NDW8 1320 aa20.43■□□□□ 0.86
VARS-228ENST00000495010 COL18A1P39060 1754 aa20.43■□□□□ 0.86
VARS-228ENST00000495010 AKAP12Q02952 1782 aa20.41■□□□□ 0.86
VARS-228ENST00000495010 WNK3Q9BYP7 1800 aa20.41■□□□□ 0.86
VARS-228ENST00000495010 ZBTB7AO95365 584 aa20.41■□□□□ 0.86
VARS-228ENST00000495010 BCL9O00512 1426 aa20.41■□□□□ 0.86
VARS-228ENST00000495010 TRPM1Q7Z4N2 1603 aa20.41■□□□□ 0.86
VARS-228ENST00000495010 TXNRD1Q16881 649 aa20.4■□□□□ 0.86
VARS-228ENST00000495010 PROM2Q8N271 834 aa20.4■□□□□ 0.86
VARS-228ENST00000495010 ROCK2O75116 1388 aaKnown RBP20.39■□□□□ 0.85
VARS-228ENST00000495010 CCDC7Q96M83 1385 aa20.39■□□□□ 0.85
VARS-228ENST00000495010 KTN1Q86UP2 1357 aaKnown RBP20.38■□□□□ 0.85
VARS-228ENST00000495010 PDGFDQ9GZP0 370 aaPredicted RBP20.38■□□□□ 0.85
VARS-228ENST00000495010 ATF5Q9Y2D1 282 aaPredicted RBP20.38■□□□□ 0.85
VARS-228ENST00000495010 CASZ1Q86V15 1759 aa20.38■□□□□ 0.85
VARS-228ENST00000495010 RGPD5Q99666 1765 aa20.37■□□□□ 0.85
VARS-228ENST00000495010 SLC15A2Q16348 729 aa20.36■□□□□ 0.85
VARS-228ENST00000495010 NEUROD1Q13562 356 aa20.34■□□□□ 0.85
VARS-228ENST00000495010 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.34■□□□□ 0.85
VARS-228ENST00000495010 NLRP2Q9NX02 1062 aa20.34■□□□□ 0.85
VARS-228ENST00000495010 PTGER2P43116 358 aa20.33■□□□□ 0.85
VARS-228ENST00000495010 ACSBG1Q96GR2 724 aa20.33■□□□□ 0.85
VARS-228ENST00000495010 SIN3AQ96ST3 1273 aa20.33■□□□□ 0.85
VARS-228ENST00000495010 TNS2Q63HR2 1409 aa20.33■□□□□ 0.84
VARS-228ENST00000495010 MTFR1LQ9H019 292 aa20.32■□□□□ 0.84
VARS-228ENST00000495010 NFAT5O94916 1531 aa20.32■□□□□ 0.84
VARS-228ENST00000495010 ABCC6O95255 1503 aa20.32■□□□□ 0.84
VARS-228ENST00000495010 MYOM1P52179 1685 aa20.31■□□□□ 0.84
VARS-228ENST00000495010 FHDC1Q9C0D6 1143 aaPredicted RBP20.3■□□□□ 0.84
VARS-228ENST00000495010 IL2RBP14784 551 aa20.29■□□□□ 0.84
VARS-228ENST00000495010 TMC1Q8TDI8 760 aa20.29■□□□□ 0.84
VARS-228ENST00000495010 SYT17Q9BSW7 474 aa20.29■□□□□ 0.84
VARS-228ENST00000495010 HDGFL2Q7Z4V5 671 aaPredicted RBP20.28■□□□□ 0.84
VARS-228ENST00000495010 ERBB3P21860 1342 aa20.27■□□□□ 0.84
VARS-228ENST00000495010 NHSQ6T4R5 1651 aa20.27■□□□□ 0.84
VARS-228ENST00000495010 USP31Q70CQ4 1352 aa20.27■□□□□ 0.84
VARS-228ENST00000495010 NME9Q86XW9 330 aa20.27■□□□□ 0.84
VARS-228ENST00000495010 ANKRD24Q8TF21 1146 aa20.26■□□□□ 0.83
VARS-228ENST00000495010 MON2Q7Z3U7 1717 aa20.26■□□□□ 0.83
VARS-228ENST00000495010 ARXQ96QS3 562 aa20.25■□□□□ 0.83
VARS-228ENST00000495010 ZNF784Q8NCA9 323 aaPredicted RBP20.24■□□□□ 0.83
VARS-228ENST00000495010 CARD11Q9BXL7 1154 aa20.24■□□□□ 0.83
VARS-228ENST00000495010 SBNO2Q9Y2G9 1366 aa20.22■□□□□ 0.83
VARS-228ENST00000495010 LTN1O94822 1766 aa20.22■□□□□ 0.83
VARS-228ENST00000495010 SGIP1Q9BQI5 828 aa20.22■□□□□ 0.83
VARS-228ENST00000495010 TERF2IPQ9NYB0 399 aa20.22■□□□□ 0.83
VARS-228ENST00000495010 KAT6BQ8WYB5 2073 aa20.2■□□□□ 0.82
VARS-228ENST00000495010 DDX54Q8TDD1 881 aaKnown RBP20.2■□□□□ 0.82
VARS-228ENST00000495010 SLC12A5Q9H2X9 1139 aa20.2■□□□□ 0.82
VARS-228ENST00000495010 USP54Q70EL1 1684 aa20.19■□□□□ 0.82
VARS-228ENST00000495010 EDC4Q6P2E9 1401 aaKnown RBP20.19■□□□□ 0.82
VARS-228ENST00000495010 BTAF1O14981 1849 aa20.19■□□□□ 0.82
VARS-228ENST00000495010 CD163L1Q9NR16 1453 aa20.18■□□□□ 0.82
VARS-228ENST00000495010 ZNF827Q17R98 1081 aa20.18■□□□□ 0.82
VARS-228ENST00000495010 KLHL34Q8N239 644 aa20.18■□□□□ 0.82
VARS-228ENST00000495010 LTV1Q96GA3 475 aaPredicted RBP20.18■□□□□ 0.82
VARS-228ENST00000495010 POLD1P28340 1107 aa20.17■□□□□ 0.82
VARS-228ENST00000495010 GPR162Q16538 588 aa20.17■□□□□ 0.82
VARS-228ENST00000495010 SLC27A3Q5K4L6 730 aa20.17■□□□□ 0.82
VARS-228ENST00000495010 LRRC4BQ9NT99 713 aa20.17■□□□□ 0.82
VARS-228ENST00000495010 PAPPAQ13219 1627 aa20.16■□□□□ 0.82
VARS-228ENST00000495010 SLC16A10Q8TF71 515 aa20.16■□□□□ 0.82
VARS-228ENST00000495010 IP6K1Q92551 441 aa20.16■□□□□ 0.82
VARS-228ENST00000495010 SYTL4Q96C24 671 aaPredicted RBP20.16■□□□□ 0.82
VARS-228ENST00000495010 MAP3K5Q99683 1374 aa20.15■□□□□ 0.82
VARS-228ENST00000495010 CHD4Q14839 1912 aa20.14■□□□□ 0.81
VARS-228ENST00000495010 A0A1W2PP64 1363 aa20.14■□□□□ 0.81
VARS-228ENST00000495010 AKT1S1Q96B36 256 aa20.14■□□□□ 0.81
VARS-228ENST00000495010 TFCP2L1Q9NZI6 479 aa20.14■□□□□ 0.81
VARS-228ENST00000495010 PELP1Q8IZL8 1130 aaKnown RBP20.13■□□□□ 0.81
VARS-228ENST00000495010 COG3Q96JB2 828 aa20.13■□□□□ 0.81
VARS-228ENST00000495010 AMPHP49418 695 aa20.12■□□□□ 0.81
VARS-228ENST00000495010 PUS7Q96PZ0 661 aaKnown RBP20.12■□□□□ 0.81
VARS-228ENST00000495010 SENP3-EIF4A1A0A087X0R7 540 aa20.11■□□□□ 0.81
VARS-228ENST00000495010 PRIM1P49642 420 aaKnown RBP20.11■□□□□ 0.81
VARS-228ENST00000495010 FAM208AQ9UK61 1670 aaKnown RBP20.1■□□□□ 0.81
VARS-228ENST00000495010 TONSLQ96HA7 1378 aa20.09■□□□□ 0.81
VARS-228ENST00000495010 PNPLA7Q6ZV29 1317 aa20.09■□□□□ 0.81
VARS-228ENST00000495010 C1QTNF8P60827 252 aa20.09■□□□□ 0.81
VARS-228ENST00000495010 MSH5O43196 834 aa20.08■□□□□ 0.81
VARS-228ENST00000495010 HOXC9P31274 260 aa20.08■□□□□ 0.81
VARS-228ENST00000495010 KCNQ4P56696 695 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms