RNA–Protein interactions for RNA: ENST00000494815.1

TSPAN4-212, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 2,187 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-212ENST00000494815 HMOX1P09601 288 aa24.05■■□□□ 1.44
TSPAN4-212ENST00000494815 RIPK4P57078 832 aa24.05■■□□□ 1.44
TSPAN4-212ENST00000494815 MARF1Q9Y4F3 1742 aaKnown RBP24.04■■□□□ 1.44
TSPAN4-212ENST00000494815 PAK3O75914 559 aaPredicted RBP24.03■■□□□ 1.44
TSPAN4-212ENST00000494815 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.03■■□□□ 1.44
TSPAN4-212ENST00000494815 TMEM94Q12767 1356 aa24.03■■□□□ 1.44
TSPAN4-212ENST00000494815 PSME1Q06323 249 aa24.03■■□□□ 1.44
TSPAN4-212ENST00000494815 STRCP1A6NGW2 1772 aa24.02■■□□□ 1.44
TSPAN4-212ENST00000494815 SOX12O15370 315 aa24.02■■□□□ 1.44
TSPAN4-212ENST00000494815 NFE2L2Q16236 605 aa24.02■■□□□ 1.44
TSPAN4-212ENST00000494815 HSP90AB2PQ58FF8 381 aa24.02■■□□□ 1.44
TSPAN4-212ENST00000494815 C1orf167Q5SNV9 1468 aa24.01■■□□□ 1.43
TSPAN4-212ENST00000494815 KIF1AQ12756 1690 aa24■■□□□ 1.43
TSPAN4-212ENST00000494815 CCDC136Q96JN2 1154 aa24■■□□□ 1.43
TSPAN4-212ENST00000494815 ORAI2Q96SN7 254 aa24■■□□□ 1.43
TSPAN4-212ENST00000494815 RGPD1P0DJD0 1748 aa24■■□□□ 1.43
TSPAN4-212ENST00000494815 PLIN1O60240 522 aa23.99■■□□□ 1.43
TSPAN4-212ENST00000494815 DEKP35659 375 aaKnown RBP23.99■■□□□ 1.43
TSPAN4-212ENST00000494815 PHACTR3Q96KR7 559 aa23.99■■□□□ 1.43
TSPAN4-212ENST00000494815 AMPHP49418 695 aa23.98■■□□□ 1.43
TSPAN4-212ENST00000494815 ARHGEF10O15013 1369 aa23.98■■□□□ 1.43
TSPAN4-212ENST00000494815 ATF3P18847 181 aa23.97■■□□□ 1.43
TSPAN4-212ENST00000494815 NUTM2GQ5VZR2 741 aa23.97■■□□□ 1.43
TSPAN4-212ENST00000494815 EXOC6Q8TAG9 804 aa23.97■■□□□ 1.43
TSPAN4-212ENST00000494815 CT47B1P0C2W7 299 aaPredicted RBP23.96■■□□□ 1.43
TSPAN4-212ENST00000494815 STRCQ7RTU9 1775 aa23.96■■□□□ 1.43
TSPAN4-212ENST00000494815 RTL1A6NKG5 1358 aa23.96■■□□□ 1.43
TSPAN4-212ENST00000494815 MST1RQ04912 1400 aa23.95■■□□□ 1.43
TSPAN4-212ENST00000494815 FOXO3O43524 673 aa23.95■■□□□ 1.42
TSPAN4-212ENST00000494815 CALD1Q05682 793 aaKnown RBP23.95■■□□□ 1.42
TSPAN4-212ENST00000494815 LMOD3Q0VAK6 560 aa23.95■■□□□ 1.42
TSPAN4-212ENST00000494815 SULT6B1Q6IMI4 303 aa23.95■■□□□ 1.42
TSPAN4-212ENST00000494815 KCNH5Q8NCM2 988 aa23.93■■□□□ 1.42
TSPAN4-212ENST00000494815 HOXC9P31274 260 aa23.92■■□□□ 1.42
TSPAN4-212ENST00000494815 ANP32AP39687 249 aaKnown RBP23.92■■□□□ 1.42
TSPAN4-212ENST00000494815 CADPS2Q86UW7 1296 aa23.92■■□□□ 1.42
TSPAN4-212ENST00000494815 AEBP1Q8IUX7 1158 aa23.92■■□□□ 1.42
TSPAN4-212ENST00000494815 NFAT5O94916 1531 aa23.92■■□□□ 1.42
TSPAN4-212ENST00000494815 BCAR3O75815 825 aa23.92■■□□□ 1.42
TSPAN4-212ENST00000494815 KDRP35968 1356 aa23.91■■□□□ 1.42
TSPAN4-212ENST00000494815 TRPM3Q9HCF6 1732 aaPredicted RBP23.91■■□□□ 1.42
TSPAN4-212ENST00000494815 MSH6P52701 1360 aa23.91■■□□□ 1.42
TSPAN4-212ENST00000494815 RARSP54136 660 aaKnown RBP23.91■■□□□ 1.42
TSPAN4-212ENST00000494815 IPO9Q96P70 1041 aaKnown RBP23.91■■□□□ 1.42
TSPAN4-212ENST00000494815 IGSF1Q8N6C5 1336 aa23.9■■□□□ 1.42
TSPAN4-212ENST00000494815 CRBNQ96SW2 442 aa23.9■■□□□ 1.42
TSPAN4-212ENST00000494815 C20orf194Q5TEA3 1177 aa23.89■■□□□ 1.41
TSPAN4-212ENST00000494815 KRT28Q7Z3Y7 464 aa23.89■■□□□ 1.41
TSPAN4-212ENST00000494815 TSR2Q969E8 191 aaKnown RBP23.89■■□□□ 1.41
TSPAN4-212ENST00000494815 SLIT3O75094 1523 aa23.88■■□□□ 1.41
TSPAN4-212ENST00000494815 PHRF1Q9P1Y6 1649 aaKnown RBP23.87■■□□□ 1.41
TSPAN4-212ENST00000494815 EYA1Q99502 592 aa23.86■■□□□ 1.41
TSPAN4-212ENST00000494815 DLG5Q8TDM6 1919 aa23.86■■□□□ 1.41
TSPAN4-212ENST00000494815 XPCQ01831 940 aaPredicted RBP23.86■■□□□ 1.41
TSPAN4-212ENST00000494815 PDE3AQ14432 1141 aa23.86■■□□□ 1.41
TSPAN4-212ENST00000494815 LTN1O94822 1766 aa23.86■■□□□ 1.41
TSPAN4-212ENST00000494815 USP19O94966 1318 aa23.86■■□□□ 1.41
TSPAN4-212ENST00000494815 EXOSC9Q06265 439 aaKnown RBP23.85■■□□□ 1.41
TSPAN4-212ENST00000494815 NBR1Q14596 966 aa23.85■■□□□ 1.41
TSPAN4-212ENST00000494815 IP6K1Q92551 441 aa23.85■■□□□ 1.41
TSPAN4-212ENST00000494815 ANO8Q9HCE9 1232 aaPredicted RBP23.85■■□□□ 1.41
TSPAN4-212ENST00000494815 IFT57Q9NWB7 429 aa23.85■■□□□ 1.41
TSPAN4-212ENST00000494815 GNAI1P63096 354 aa23.84■■□□□ 1.41
TSPAN4-212ENST00000494815 XIRP1Q702N8 1843 aaKnown RBP23.83■■□□□ 1.41
TSPAN4-212ENST00000494815 GCP02774 474 aa23.82■■□□□ 1.4
TSPAN4-212ENST00000494815 ZNF853P0CG23 659 aa23.82■■□□□ 1.4
TSPAN4-212ENST00000494815 NPHP3Q7Z494 1330 aa23.82■■□□□ 1.4
TSPAN4-212ENST00000494815 CANXP27824 592 aaKnown RBP23.81■■□□□ 1.4
TSPAN4-212ENST00000494815 ALS2Q96Q42 1657 aa23.81■■□□□ 1.4
TSPAN4-212ENST00000494815 THUMPD2Q9BTF0 503 aaKnown RBP23.81■■□□□ 1.4
TSPAN4-212ENST00000494815 ZBTB47Q9UFB7 747 aaPredicted RBP23.81■■□□□ 1.4
TSPAN4-212ENST00000494815 CFAP44Q96MT7 982 aa23.8■■□□□ 1.4
TSPAN4-212ENST00000494815 ZNF428Q96B54 188 aa23.79■■□□□ 1.4
TSPAN4-212ENST00000494815 LMOD2Q6P5Q4 547 aa23.79■■□□□ 1.4
TSPAN4-212ENST00000494815 ARHGEF25Q86VW2 580 aa23.79■■□□□ 1.4
TSPAN4-212ENST00000494815 ZNF335Q9H4Z2 1342 aaPredicted RBP23.79■■□□□ 1.4
TSPAN4-212ENST00000494815 GAS2L2Q8NHY3 880 aa23.77■■□□□ 1.4
TSPAN4-212ENST00000494815 LAS1LQ9Y4W2 734 aaKnown RBP23.77■■□□□ 1.4
TSPAN4-212ENST00000494815 FAM83GA6ND36 823 aa23.76■■□□□ 1.39
TSPAN4-212ENST00000494815 FRAT1Q92837 279 aaPredicted RBP23.76■■□□□ 1.39
TSPAN4-212ENST00000494815 MTHFSDQ2M296 383 aaKnown RBP23.75■■□□□ 1.39
TSPAN4-212ENST00000494815 ALDH1L2Q3SY69 923 aa23.75■■□□□ 1.39
TSPAN4-212ENST00000494815 LTV1Q96GA3 475 aaPredicted RBP23.75■■□□□ 1.39
TSPAN4-212ENST00000494815 BCL2L13Q9BXK5 485 aa23.75■■□□□ 1.39
TSPAN4-212ENST00000494815 MBIPQ9NS73 344 aa23.75■■□□□ 1.39
TSPAN4-212ENST00000494815 SMC4Q9NTJ3 1288 aa23.75■■□□□ 1.39
TSPAN4-212ENST00000494815 PXDNQ92626 1479 aa23.73■■□□□ 1.39
TSPAN4-212ENST00000494815 TNS3Q68CZ2 1445 aa23.73■■□□□ 1.39
TSPAN4-212ENST00000494815 DCTN1Q14203 1278 aa23.73■■□□□ 1.39
TSPAN4-212ENST00000494815 RTL5Q5HYW3 569 aaPredicted RBP23.73■■□□□ 1.39
TSPAN4-212ENST00000494815 SSH1Q8WYL5 1049 aa23.73■■□□□ 1.39
TSPAN4-212ENST00000494815 HTATSF1O43719 755 aaKnown RBP23.72■■□□□ 1.39
TSPAN4-212ENST00000494815 MS4A1P11836 297 aa23.72■■□□□ 1.39
TSPAN4-212ENST00000494815 MED1Q15648 1581 aaPredicted RBP23.72■■□□□ 1.39
TSPAN4-212ENST00000494815 ZKSCAN2Q63HK3 967 aa23.72■■□□□ 1.39
TSPAN4-212ENST00000494815 TCERG1O14776 1098 aaKnown RBP23.71■■□□□ 1.39
TSPAN4-212ENST00000494815 AAMPQ13685 434 aa23.71■■□□□ 1.39
TSPAN4-212ENST00000494815 AEBP2Q6ZN18 517 aaPredicted RBP23.71■■□□□ 1.39
TSPAN4-212ENST00000494815 BRINP3Q76B58 766 aa23.71■■□□□ 1.39
TSPAN4-212ENST00000494815 RTF1Q92541 710 aaKnown RBP23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms