RNA–Protein interactions for RNA: ENST00000493660.5

SMARCE1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-211ENST00000493660 BCL11BQ9C0K0 894 aaPredicted RBP9.47□□□□□ -0.89
SMARCE1-211ENST00000493660 USP35Q9P2H5 1018 aa9.47□□□□□ -0.89
SMARCE1-211ENST00000493660 ZBED9Q6R2W3 1325 aa9.46□□□□□ -0.89
SMARCE1-211ENST00000493660 NPHP3Q7Z494 1330 aa9.46□□□□□ -0.89
SMARCE1-211ENST00000493660 NFAT5O94916 1531 aa9.46□□□□□ -0.89
SMARCE1-211ENST00000493660 KLHL34Q8N239 644 aa9.46□□□□□ -0.9
SMARCE1-211ENST00000493660 POLKQ9UBT6 870 aa9.46□□□□□ -0.9
SMARCE1-211ENST00000493660 ZRANB1Q9UGI0 708 aa9.46□□□□□ -0.9
SMARCE1-211ENST00000493660 IQSEC2Q5JU85 1478 aa9.46□□□□□ -0.9
SMARCE1-211ENST00000493660 KRT28Q7Z3Y7 464 aa9.45□□□□□ -0.9
SMARCE1-211ENST00000493660 NUDCQ9Y266 331 aa9.45□□□□□ -0.9
SMARCE1-211ENST00000493660 RGPD1P0DJD0 1748 aa9.45□□□□□ -0.9
SMARCE1-211ENST00000493660 NLRP6P59044 892 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 ABTB2Q8N961 1025 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 ADAMTS8Q9UP79 889 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 RTL1A6NKG5 1358 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 TNS3Q68CZ2 1445 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 FOXO3O43524 673 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 NGEFQ8N5V2 710 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 SLAIN2Q9P270 581 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 USP19O94966 1318 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 ABCC6O95255 1503 aa9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 AHDC1Q5TGY3 1603 aaPredicted RBP9.44□□□□□ -0.9
SMARCE1-211ENST00000493660 RRP9O43818 475 aaKnown RBP9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 DIAPH1O60610 1272 aaKnown RBP9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 PAK3O75914 559 aaPredicted RBP9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 BRINP3Q76B58 766 aa9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 FAM43AQ8N2R8 423 aa9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 KCNH5Q8NCM2 988 aa9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 ROBO1Q9Y6N7 1651 aa9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 ABCA3Q99758 1704 aa9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 ARHGEF10O15013 1369 aa9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 FLT4P35916 1363 aa9.43□□□□□ -0.9
SMARCE1-211ENST00000493660 EMILIN1Q9Y6C2 1016 aa9.42□□□□□ -0.9
SMARCE1-211ENST00000493660 PNNQ9H307 717 aaKnown RBP9.42□□□□□ -0.9
SMARCE1-211ENST00000493660 SOS2Q07890 1332 aaPredicted RBP9.41□□□□□ -0.9
SMARCE1-211ENST00000493660 MAP3K19Q56UN5 1328 aa9.41□□□□□ -0.9
SMARCE1-211ENST00000493660 SPATA31A3Q5VYP0 1347 aa9.41□□□□□ -0.9
SMARCE1-211ENST00000493660 MAPK8IP2Q13387 824 aaPredicted RBP9.4□□□□□ -0.9
SMARCE1-211ENST00000493660 RRS1Q15050 365 aaKnown RBP9.4□□□□□ -0.9
SMARCE1-211ENST00000493660 FAM208AQ9UK61 1670 aaKnown RBP9.4□□□□□ -0.9
SMARCE1-211ENST00000493660 IL13P35225 146 aa9.4□□□□□ -0.9
SMARCE1-211ENST00000493660 RUNDC1Q96C34 613 aa9.4□□□□□ -0.9
SMARCE1-211ENST00000493660 COL22A1Q8NFW1 1626 aaPredicted RBP9.4□□□□□ -0.91
SMARCE1-211ENST00000493660 CAMTA1Q9Y6Y1 1673 aa9.39□□□□□ -0.91
SMARCE1-211ENST00000493660 PDE3BQ13370 1112 aa9.39□□□□□ -0.91
SMARCE1-211ENST00000493660 COL18A1P39060 1754 aa9.39□□□□□ -0.91
SMARCE1-211ENST00000493660 PPM1GO15355 546 aaPredicted RBP9.39□□□□□ -0.91
SMARCE1-211ENST00000493660 U2AF1L5P0DN76 240 aaPredicted RBP9.39□□□□□ -0.91
SMARCE1-211ENST00000493660 FBLN1P23142 703 aa9.39□□□□□ -0.91
SMARCE1-211ENST00000493660 U2AF1Q01081 240 aaKnown RBP eCLIP9.39□□□□□ -0.91
SMARCE1-211ENST00000493660 XPCQ01831 940 aaPredicted RBP9.39□□□□□ -0.91
SMARCE1-211ENST00000493660 FCHSD2O94868 740 aa9.38□□□□□ -0.91
SMARCE1-211ENST00000493660 NUTM2GQ5VZR2 741 aa9.38□□□□□ -0.91
SMARCE1-211ENST00000493660 PHLPP1O60346 1717 aa9.38□□□□□ -0.91
SMARCE1-211ENST00000493660 U2SURPO15042 1029 aaKnown RBP9.38□□□□□ -0.91
SMARCE1-211ENST00000493660 AMPHP49418 695 aa9.38□□□□□ -0.91
SMARCE1-211ENST00000493660 IPO9Q96P70 1041 aaKnown RBP9.38□□□□□ -0.91
SMARCE1-211ENST00000493660 RGPD5Q99666 1765 aa9.38□□□□□ -0.91
SMARCE1-211ENST00000493660 GCP02774 474 aa9.37□□□□□ -0.91
SMARCE1-211ENST00000493660 HOXC9P31274 260 aa9.37□□□□□ -0.91
SMARCE1-211ENST00000493660 EIF4A2Q14240 407 aaKnown RBP9.37□□□□□ -0.91
SMARCE1-211ENST00000493660 HSP90AA2PQ14568 343 aaPredicted RBP9.37□□□□□ -0.91
SMARCE1-211ENST00000493660 IP6K1Q92551 441 aa9.37□□□□□ -0.91
SMARCE1-211ENST00000493660 RNF39Q9H2S5 420 aa9.37□□□□□ -0.91
SMARCE1-211ENST00000493660 DLG5Q8TDM6 1919 aa9.37□□□□□ -0.91
SMARCE1-211ENST00000493660 PLEKHF1Q96S99 279 aa9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 BRPF3Q9ULD4 1205 aa9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 CPDO75976 1380 aa9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 COL16A1Q07092 1604 aaPredicted RBP9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 CCDC27Q2M243 656 aa9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 ARHGEF25Q86VW2 580 aa9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 CCDC146Q8IYE0 955 aa9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 DDX17Q92841 729 aaKnown RBP9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 ZNF521Q96K83 1311 aa9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 LMO7Q8WWI1 1683 aa9.36□□□□□ -0.91
SMARCE1-211ENST00000493660 APAF1O14727 1248 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 HSP90AB2PQ58FF8 381 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 LMOD2Q6P5Q4 547 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 ZBTB47Q9UFB7 747 aaPredicted RBP9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 RGPD2P0DJD1 1756 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 MAPK8IP3Q9UPT6 1336 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 KDRP35968 1356 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 SOX12O15370 315 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 TOM1O60784 492 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 NEFMP07197 916 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 ANP32AP39687 249 aaKnown RBP9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 NCAPD2Q15021 1401 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 IGSF1Q8N6C5 1336 aa9.35□□□□□ -0.91
SMARCE1-211ENST00000493660 TCP11L2Q8N4U5 519 aa9.34□□□□□ -0.91
SMARCE1-211ENST00000493660 SOCS7O14512 581 aa9.33□□□□□ -0.92
SMARCE1-211ENST00000493660 PRKAR2BP31323 418 aa9.33□□□□□ -0.92
SMARCE1-211ENST00000493660 LRRC59Q96AG4 307 aaKnown RBP9.33□□□□□ -0.92
SMARCE1-211ENST00000493660 COL14A1Q05707 1796 aaKnown RBP9.32□□□□□ -0.92
SMARCE1-211ENST00000493660 PLEKHG2Q9H7P9 1386 aa9.32□□□□□ -0.92
SMARCE1-211ENST00000493660 TMPOP42166 694 aaKnown RBP9.31□□□□□ -0.92
SMARCE1-211ENST00000493660 GOLGA2Q08379 1002 aa9.31□□□□□ -0.92
SMARCE1-211ENST00000493660 WDR63Q8IWG1 891 aa9.31□□□□□ -0.92
SMARCE1-211ENST00000493660 HMOX1P09601 288 aa9.31□□□□□ -0.92
SMARCE1-211ENST00000493660 NFE2L2Q16236 605 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms