RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 CDCA7Q9BWT1 371 aaPredicted RBP25.56■■□□□ 1.68
NUP50-218ENST00000493456 BCL11BQ9C0K0 894 aaPredicted RBP25.56■■□□□ 1.68
NUP50-218ENST00000493456 CABP1Q9NZU7 370 aa25.56■■□□□ 1.68
NUP50-218ENST00000493456 COL18A1P39060 1754 aa25.55■■□□□ 1.68
NUP50-218ENST00000493456 CASZ1Q86V15 1759 aa25.55■■□□□ 1.68
NUP50-218ENST00000493456 WDR17Q8IZU2 1322 aa25.55■■□□□ 1.68
NUP50-218ENST00000493456 CPSF1Q10570 1443 aaKnown RBP25.54■■□□□ 1.68
NUP50-218ENST00000493456 ANO8Q9HCE9 1232 aaPredicted RBP25.53■■□□□ 1.68
NUP50-218ENST00000493456 UTRNP46939 3433 aa25.53■■□□□ 1.68
NUP50-218ENST00000493456 AKAP12Q02952 1782 aa25.51■■□□□ 1.67
NUP50-218ENST00000493456 EVC2Q86UK5 1308 aa25.5■■□□□ 1.67
NUP50-218ENST00000493456 TRPM1Q7Z4N2 1603 aa25.49■■□□□ 1.67
NUP50-218ENST00000493456 MARCH10Q8NA82 808 aaPredicted RBP25.49■■□□□ 1.67
NUP50-218ENST00000493456 KCNH5Q8NCM2 988 aa25.49■■□□□ 1.67
NUP50-218ENST00000493456 AXIN2Q9Y2T1 843 aa25.49■■□□□ 1.67
NUP50-218ENST00000493456 ARHGEF25Q86VW2 580 aa25.48■■□□□ 1.67
NUP50-218ENST00000493456 CARD10Q9BWT7 1032 aa25.47■■□□□ 1.67
NUP50-218ENST00000493456 PTF1AQ7RTS3 328 aa25.46■■□□□ 1.67
NUP50-218ENST00000493456 ZNF692Q9BU19 519 aaPredicted RBP25.46■■□□□ 1.67
NUP50-218ENST00000493456 ABCC6O95255 1503 aa25.46■■□□□ 1.67
NUP50-218ENST00000493456 PROM2Q8N271 834 aa25.45■■□□□ 1.66
NUP50-218ENST00000493456 TTC21BQ7Z4L5 1316 aa25.44■■□□□ 1.66
NUP50-218ENST00000493456 TTC21AQ8NDW8 1320 aa25.44■■□□□ 1.66
NUP50-218ENST00000493456 CSB-PGBD3P0DP91 1061 aa25.44■■□□□ 1.66
NUP50-218ENST00000493456 CCDC7Q96M83 1385 aa25.43■■□□□ 1.66
NUP50-218ENST00000493456 MYOM1P52179 1685 aa25.42■■□□□ 1.66
NUP50-218ENST00000493456 STK32BQ9NY57 414 aa25.42■■□□□ 1.66
NUP50-218ENST00000493456 NFAT5O94916 1531 aa25.42■■□□□ 1.66
NUP50-218ENST00000493456 RGPD5Q99666 1765 aa25.41■■□□□ 1.66
NUP50-218ENST00000493456 TNS2Q63HR2 1409 aa25.41■■□□□ 1.66
NUP50-218ENST00000493456 EXOC5O00471 708 aa25.41■■□□□ 1.66
NUP50-218ENST00000493456 ZBTB7AO95365 584 aa25.41■■□□□ 1.66
NUP50-218ENST00000493456 TXNRD1Q16881 649 aa25.41■■□□□ 1.66
NUP50-218ENST00000493456 PDGFDQ9GZP0 370 aaPredicted RBP25.41■■□□□ 1.66
NUP50-218ENST00000493456 PTGER2P43116 358 aa25.4■■□□□ 1.66
NUP50-218ENST00000493456 SOX12O15370 315 aa25.38■■□□□ 1.65
NUP50-218ENST00000493456 SLC15A2Q16348 729 aa25.38■■□□□ 1.65
NUP50-218ENST00000493456 NHSQ6T4R5 1651 aa25.37■■□□□ 1.65
NUP50-218ENST00000493456 L3MBTL2Q969R5 705 aa25.36■■□□□ 1.65
NUP50-218ENST00000493456 KTN1Q86UP2 1357 aaKnown RBP25.35■■□□□ 1.65
NUP50-218ENST00000493456 MTFR1LQ9H019 292 aa25.35■■□□□ 1.65
NUP50-218ENST00000493456 ATF5Q9Y2D1 282 aaPredicted RBP25.35■■□□□ 1.65
NUP50-218ENST00000493456 ROCK2O75116 1388 aaKnown RBP25.34■■□□□ 1.65
NUP50-218ENST00000493456 MON2Q7Z3U7 1717 aa25.32■■□□□ 1.64
NUP50-218ENST00000493456 USP54Q70EL1 1684 aa25.32■■□□□ 1.64
NUP50-218ENST00000493456 FHDC1Q9C0D6 1143 aaPredicted RBP25.31■■□□□ 1.64
NUP50-218ENST00000493456 SYT17Q9BSW7 474 aa25.3■■□□□ 1.64
NUP50-218ENST00000493456 ERBB3P21860 1342 aa25.3■■□□□ 1.64
NUP50-218ENST00000493456 PAPPAQ13219 1627 aa25.3■■□□□ 1.64
NUP50-218ENST00000493456 USP31Q70CQ4 1352 aa25.3■■□□□ 1.64
NUP50-218ENST00000493456 SGIP1Q9BQI5 828 aa25.29■■□□□ 1.64
NUP50-218ENST00000493456 ZNF784Q8NCA9 323 aaPredicted RBP25.28■■□□□ 1.64
NUP50-218ENST00000493456 SBNO2Q9Y2G9 1366 aa25.27■■□□□ 1.64
NUP50-218ENST00000493456 IL2RBP14784 551 aa25.26■■□□□ 1.63
NUP50-218ENST00000493456 GOLGB1Q14789 3259 aaKnown RBP25.25■■□□□ 1.63
NUP50-218ENST00000493456 ACSBG1Q96GR2 724 aa25.25■■□□□ 1.63
NUP50-218ENST00000493456 NLRP2Q9NX02 1062 aa25.25■■□□□ 1.63
NUP50-218ENST00000493456 MAP3K5Q99683 1374 aa25.25■■□□□ 1.63
NUP50-218ENST00000493456 LTN1O94822 1766 aa25.24■■□□□ 1.63
NUP50-218ENST00000493456 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.23■■□□□ 1.63
NUP50-218ENST00000493456 ARXQ96QS3 562 aa25.23■■□□□ 1.63
NUP50-218ENST00000493456 BTAF1O14981 1849 aa25.23■■□□□ 1.63
NUP50-218ENST00000493456 CD163L1Q9NR16 1453 aa25.21■■□□□ 1.63
NUP50-218ENST00000493456 CHD4Q14839 1912 aa25.21■■□□□ 1.63
NUP50-218ENST00000493456 ANKRD24Q8TF21 1146 aa25.2■■□□□ 1.62
NUP50-218ENST00000493456 NME9Q86XW9 330 aa25.19■■□□□ 1.62
NUP50-218ENST00000493456 HDGFL2Q7Z4V5 671 aaPredicted RBP25.18■■□□□ 1.62
NUP50-218ENST00000493456 SIN3AQ96ST3 1273 aa25.18■■□□□ 1.62
NUP50-218ENST00000493456 EDC4Q6P2E9 1401 aaKnown RBP25.18■■□□□ 1.62
NUP50-218ENST00000493456 ZNF827Q17R98 1081 aa25.17■■□□□ 1.62
NUP50-218ENST00000493456 QSER1Q2KHR3 1735 aa25.16■■□□□ 1.62
NUP50-218ENST00000493456 LRRC4BQ9NT99 713 aa25.15■■□□□ 1.62
NUP50-218ENST00000493456 FAM208AQ9UK61 1670 aaKnown RBP25.15■■□□□ 1.62
NUP50-218ENST00000493456 NEUROD1Q13562 356 aa25.14■■□□□ 1.62
NUP50-218ENST00000493456 SLC27A3Q5K4L6 730 aa25.14■■□□□ 1.62
NUP50-218ENST00000493456 TMC1Q8TDI8 760 aa25.14■■□□□ 1.62
NUP50-218ENST00000493456 SLC16A10Q8TF71 515 aa25.14■■□□□ 1.62
NUP50-218ENST00000493456 AKT1S1Q96B36 256 aa25.12■■□□□ 1.61
NUP50-218ENST00000493456 TERF2IPQ9NYB0 399 aa25.11■■□□□ 1.61
NUP50-218ENST00000493456 A0A1W2PP64 1363 aa25.1■■□□□ 1.61
NUP50-218ENST00000493456 COL24A1Q17RW2 1714 aa25.1■■□□□ 1.61
NUP50-218ENST00000493456 POLD1P28340 1107 aa25.1■■□□□ 1.61
NUP50-218ENST00000493456 CARD11Q9BXL7 1154 aa25.1■■□□□ 1.61
NUP50-218ENST00000493456 C1QTNF8P60827 252 aa25.09■■□□□ 1.61
NUP50-218ENST00000493456 GPR162Q16538 588 aa25.09■■□□□ 1.61
NUP50-218ENST00000493456 IP6K1Q92551 441 aa25.09■■□□□ 1.61
NUP50-218ENST00000493456 SLC12A5Q9H2X9 1139 aa25.09■■□□□ 1.61
NUP50-218ENST00000493456 PUS7Q96PZ0 661 aaKnown RBP25.08■■□□□ 1.61
NUP50-218ENST00000493456 KAT6BQ8WYB5 2073 aa25.08■■□□□ 1.6
NUP50-218ENST00000493456 SENP3-EIF4A1A0A087X0R7 540 aa25.07■■□□□ 1.6
NUP50-218ENST00000493456 DDX54Q8TDD1 881 aaKnown RBP25.07■■□□□ 1.6
NUP50-218ENST00000493456 PNPLA7Q6ZV29 1317 aa25.06■■□□□ 1.6
NUP50-218ENST00000493456 ANKRD36BQ8N2N9 1353 aa25.05■■□□□ 1.6
NUP50-218ENST00000493456 TFCP2L1Q9NZI6 479 aa25.04■■□□□ 1.6
NUP50-218ENST00000493456 DOT1LQ8TEK3 1739 aa25.03■■□□□ 1.6
NUP50-218ENST00000493456 KLHL34Q8N239 644 aa25.03■■□□□ 1.6
NUP50-218ENST00000493456 LY75O60449 1722 aa25.03■■□□□ 1.6
NUP50-218ENST00000493456 TUBGCP6Q96RT7 1819 aa25.02■■□□□ 1.6
NUP50-218ENST00000493456 SYTL4Q96C24 671 aaPredicted RBP25.02■■□□□ 1.6
NUP50-218ENST00000493456 LTV1Q96GA3 475 aaPredicted RBP25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms