RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 CTHP32929 405 aa7.14□□□□□ -1.27
PTCD3-216ENST00000487043 ZNF511Q8NB15 262 aa7.14□□□□□ -1.27
PTCD3-216ENST00000487043 HELBQ8NG08 1087 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-216ENST00000487043 HMX1Q9NP08 348 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-216ENST00000487043 FAM181BA6NEQ2 426 aa7.13□□□□□ -1.27
PTCD3-216ENST00000487043 VEGFBP49765 207 aa7.13□□□□□ -1.27
PTCD3-216ENST00000487043 NNTQ13423 1086 aa7.13□□□□□ -1.27
PTCD3-216ENST00000487043 LRRN4Q8WUT4 740 aa7.13□□□□□ -1.27
PTCD3-216ENST00000487043 IRF7Q92985 503 aa7.13□□□□□ -1.27
PTCD3-216ENST00000487043 ZFP42Q96MM3 310 aa7.13□□□□□ -1.27
PTCD3-216ENST00000487043 CFAP99D6REC4 459 aa7.12□□□□□ -1.27
PTCD3-216ENST00000487043 GMPRP36959 345 aa7.12□□□□□ -1.27
PTCD3-216ENST00000487043 IRF5Q13568 498 aa7.12□□□□□ -1.27
PTCD3-216ENST00000487043 SCARF1Q14162 830 aa7.12□□□□□ -1.27
PTCD3-216ENST00000487043 HDGFL1Q5TGJ6 251 aa7.12□□□□□ -1.27
PTCD3-216ENST00000487043 DESI1Q6ICB0 168 aa7.12□□□□□ -1.27
PTCD3-216ENST00000487043 RETREG2Q8NC44 543 aa7.12□□□□□ -1.27
PTCD3-216ENST00000487043 TRAIPQ9BWF2 469 aa7.12□□□□□ -1.27
PTCD3-216ENST00000487043 NPAS3Q8IXF0 933 aa7.11□□□□□ -1.27
PTCD3-216ENST00000487043 TRIM34Q9BYJ4 488 aa7.11□□□□□ -1.27
PTCD3-216ENST00000487043 ACIN1Q9UKV3 1341 aaKnown RBP7.1□□□□□ -1.27
PTCD3-216ENST00000487043 WDR4P57081 412 aaKnown RBP7.1□□□□□ -1.27
PTCD3-216ENST00000487043 VAC14Q08AM6 782 aa7.1□□□□□ -1.27
PTCD3-216ENST00000487043 ARID5BQ14865 1188 aa7.1□□□□□ -1.27
PTCD3-216ENST00000487043 WASHC4Q2M389 1173 aa7.1□□□□□ -1.27
PTCD3-216ENST00000487043 AEBP1Q8IUX7 1158 aa7.1□□□□□ -1.27
PTCD3-216ENST00000487043 FAM174AQ8TBP5 190 aa7.1□□□□□ -1.27
PTCD3-216ENST00000487043 PPP1R15AO75807 674 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-216ENST00000487043 ADH1CP00326 375 aa7.09□□□□□ -1.27
PTCD3-216ENST00000487043 MRPL14Q6P1L8 145 aaKnown RBP7.09□□□□□ -1.27
PTCD3-216ENST00000487043 ZSCAN1Q8NBB4 408 aa7.09□□□□□ -1.27
PTCD3-216ENST00000487043 ADAMTS19Q8TE59 1207 aa7.09□□□□□ -1.27
PTCD3-216ENST00000487043 EPS8L1Q8TE68 723 aa7.09□□□□□ -1.27
PTCD3-216ENST00000487043 PURBQ96QR8 312 aaKnown RBP7.09□□□□□ -1.27
PTCD3-216ENST00000487043 H3BM21 787 aa7.08□□□□□ -1.28
PTCD3-216ENST00000487043 RFX1P22670 979 aa7.08□□□□□ -1.28
PTCD3-216ENST00000487043 AGERQ15109 404 aa7.08□□□□□ -1.28
PTCD3-216ENST00000487043 LYPD8Q6UX82 237 aa7.08□□□□□ -1.28
PTCD3-216ENST00000487043 MPNDQ8N594 471 aa7.08□□□□□ -1.28
PTCD3-216ENST00000487043 GPR37L1O60883 481 aa7.07□□□□□ -1.28
PTCD3-216ENST00000487043 TIMP2P16035 220 aa7.07□□□□□ -1.28
PTCD3-216ENST00000487043 KCTD17Q8N5Z5 321 aa7.07□□□□□ -1.28
PTCD3-216ENST00000487043 F12P00748 615 aaPredicted RBP7.06□□□□□ -1.28
PTCD3-216ENST00000487043 NR6A1Q15406 480 aa7.06□□□□□ -1.28
PTCD3-216ENST00000487043 FOXJ1Q92949 421 aa7.06□□□□□ -1.28
PTCD3-216ENST00000487043 MAP10Q9P2G4 905 aa7.06□□□□□ -1.28
PTCD3-216ENST00000487043 CCDC9Q9Y3X0 531 aaKnown RBP7.06□□□□□ -1.28
PTCD3-216ENST00000487043 ERBB4Q15303 1308 aa7.05□□□□□ -1.28
PTCD3-216ENST00000487043 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.05□□□□□ -1.28
PTCD3-216ENST00000487043 SOBPA7XYQ1 873 aa7.05□□□□□ -1.28
PTCD3-216ENST00000487043 PER1O15534 1290 aaPredicted RBP7.05□□□□□ -1.28
PTCD3-216ENST00000487043 RANGAP1P46060 587 aaPredicted RBP7.05□□□□□ -1.28
PTCD3-216ENST00000487043 MAN1A2O60476 641 aa7.04□□□□□ -1.28
PTCD3-216ENST00000487043 ZIC2O95409 532 aaPredicted RBP7.04□□□□□ -1.28
PTCD3-216ENST00000487043 CFAP70Q5T0N1 1121 aa7.04□□□□□ -1.28
PTCD3-216ENST00000487043 C6orf118Q5T5N4 469 aa7.04□□□□□ -1.28
PTCD3-216ENST00000487043 PBXIP1Q96AQ6 731 aa7.04□□□□□ -1.28
PTCD3-216ENST00000487043 ALG2Q9H553 416 aa7.04□□□□□ -1.28
PTCD3-216ENST00000487043 NPM2Q86SE8 214 aaKnown RBP7.03□□□□□ -1.28
PTCD3-216ENST00000487043 CDK15Q96Q40 435 aa7.03□□□□□ -1.28
PTCD3-216ENST00000487043 PPP1R12CQ9BZL4 782 aa7.03□□□□□ -1.28
PTCD3-216ENST00000487043 ZFAND3Q9H8U3 227 aa7.03□□□□□ -1.28
PTCD3-216ENST00000487043 UPP2O95045 317 aa7.02□□□□□ -1.29
PTCD3-216ENST00000487043 PDE4CQ08493 712 aa7.02□□□□□ -1.29
PTCD3-216ENST00000487043 NR5A1Q13285 461 aa7.02□□□□□ -1.29
PTCD3-216ENST00000487043 BPHLQ86WA6 291 aaPredicted RBP7.02□□□□□ -1.29
PTCD3-216ENST00000487043 ITPKCQ96DU7 683 aa7.02□□□□□ -1.29
PTCD3-216ENST00000487043 KLF16Q9BXK1 252 aaPredicted RBP7.02□□□□□ -1.29
PTCD3-216ENST00000487043 PALM3A6NDB9 673 aaPredicted RBP7.01□□□□□ -1.29
PTCD3-216ENST00000487043 BMP2P12643 396 aa7.01□□□□□ -1.29
PTCD3-216ENST00000487043 LMOD1P29536 600 aaPredicted RBP7.01□□□□□ -1.29
PTCD3-216ENST00000487043 SEMA3FQ13275 785 aa7.01□□□□□ -1.29
PTCD3-216ENST00000487043 PNMA1Q8ND90 353 aa7.01□□□□□ -1.29
PTCD3-216ENST00000487043 TFIP11Q9UBB9 837 aaKnown RBP7.01□□□□□ -1.29
PTCD3-216ENST00000487043 NR3C2P08235 984 aa7□□□□□ -1.29
PTCD3-216ENST00000487043 CSB-PGBD3P0DP91 1061 aa7□□□□□ -1.29
PTCD3-216ENST00000487043 LORP23490 312 aaPredicted RBP7□□□□□ -1.29
PTCD3-216ENST00000487043 C4orf48Q5BLP8 95 aa7□□□□□ -1.29
PTCD3-216ENST00000487043 SOX11P35716 441 aa6.99□□□□□ -1.29
PTCD3-216ENST00000487043 SRPK2P78362 688 aaKnown RBP6.99□□□□□ -1.29
PTCD3-216ENST00000487043 CDCA8Q53HL2 280 aa6.99□□□□□ -1.29
PTCD3-216ENST00000487043 ARMC2Q8NEN0 867 aa6.99□□□□□ -1.29
PTCD3-216ENST00000487043 UCN2Q96RP3 112 aa6.99□□□□□ -1.29
PTCD3-216ENST00000487043 FSHRP23945 695 aa6.98□□□□□ -1.29
PTCD3-216ENST00000487043 GRM5P41594 1212 aa6.98□□□□□ -1.29
PTCD3-216ENST00000487043 EIF4G2P78344 907 aaKnown RBP eCLIP6.98□□□□□ -1.29
PTCD3-216ENST00000487043 LINC00528Q8N1L1 170 aa6.98□□□□□ -1.29
PTCD3-216ENST00000487043 GZF1Q9H116 711 aaPredicted RBP6.98□□□□□ -1.29
PTCD3-216ENST00000487043 MAGEB6P1A0A0J9YX57 407 aa6.97□□□□□ -1.29
PTCD3-216ENST00000487043 CARNS1A5YM72 827 aa6.97□□□□□ -1.29
PTCD3-216ENST00000487043 NBPF14Q5TI25 921 aa6.97□□□□□ -1.29
PTCD3-216ENST00000487043 VASH1Q7L8A9 365 aaPredicted RBP6.97□□□□□ -1.29
PTCD3-216ENST00000487043 VSIG8P0DPA2 414 aa6.96□□□□□ -1.3
PTCD3-216ENST00000487043 NR1H3Q13133 447 aa6.96□□□□□ -1.3
PTCD3-216ENST00000487043 TBC1D9Q6ZT07 1266 aa6.96□□□□□ -1.3
PTCD3-216ENST00000487043 MEIOBQ8N635 442 aa6.96□□□□□ -1.3
PTCD3-216ENST00000487043 USTQ9Y2C2 406 aa6.96□□□□□ -1.3
PTCD3-216ENST00000487043 PPFIA3O75145 1194 aa6.95□□□□□ -1.3
PTCD3-216ENST00000487043 TMCO4Q5TGY1 634 aa6.95□□□□□ -1.3
PTCD3-216ENST00000487043 SH3RF1Q7Z6J0 888 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms