RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 HPS5Q9UPZ3 1129 aa8.72□□□□□ -1.01
PTPN4-210ENST00000485247 MSH6P52701 1360 aa8.72□□□□□ -1.01
PTPN4-210ENST00000485247 UBR1Q8IWV7 1749 aa8.71□□□□□ -1.01
PTPN4-210ENST00000485247 ERVK-7P63135 1459 aa8.71□□□□□ -1.01
PTPN4-210ENST00000485247 NCOA2Q15596 1464 aa8.71□□□□□ -1.01
PTPN4-210ENST00000485247 CDK12Q9NYV4 1490 aaPredicted RBP8.71□□□□□ -1.01
PTPN4-210ENST00000485247 FCHSD2O94868 740 aa8.71□□□□□ -1.02
PTPN4-210ENST00000485247 TSR3Q9UJK0 312 aaKnown RBP8.71□□□□□ -1.02
PTPN4-210ENST00000485247 ARHGAP23Q9P227 1491 aa8.7□□□□□ -1.02
PTPN4-210ENST00000485247 COL16A1Q07092 1604 aaPredicted RBP8.7□□□□□ -1.02
PTPN4-210ENST00000485247 FAM161AQ3B820 660 aa8.7□□□□□ -1.02
PTPN4-210ENST00000485247 SMYD5Q6GMV2 418 aa8.7□□□□□ -1.02
PTPN4-210ENST00000485247 ADGRG1Q9Y653 693 aa8.7□□□□□ -1.02
PTPN4-210ENST00000485247 AFF2P51816 1311 aa8.7□□□□□ -1.02
PTPN4-210ENST00000485247 FGD6Q6ZV73 1430 aa8.7□□□□□ -1.02
PTPN4-210ENST00000485247 SLIT1O75093 1534 aa8.7□□□□□ -1.02
PTPN4-210ENST00000485247 RGS12O14924 1447 aa8.69□□□□□ -1.02
PTPN4-210ENST00000485247 ABCC3O15438 1527 aa8.69□□□□□ -1.02
PTPN4-210ENST00000485247 PRDM15P57071 1507 aaPredicted RBP8.69□□□□□ -1.02
PTPN4-210ENST00000485247 SETBP1Q9Y6X0 1596 aa8.69□□□□□ -1.02
PTPN4-210ENST00000485247 FECHP22830 423 aa8.68□□□□□ -1.02
PTPN4-210ENST00000485247 SWT1Q5T5J6 900 aaKnown RBP8.68□□□□□ -1.02
PTPN4-210ENST00000485247 CFAP65Q6ZU64 1925 aaKnown RBP8.68□□□□□ -1.02
PTPN4-210ENST00000485247 RBM6P78332 1123 aaKnown RBP8.67□□□□□ -1.02
PTPN4-210ENST00000485247 HIC1Q14526 733 aa8.67□□□□□ -1.02
PTPN4-210ENST00000485247 NYAP1Q6ZVC0 841 aa8.67□□□□□ -1.02
PTPN4-210ENST00000485247 QTRT2Q9H974 415 aaKnown RBP8.67□□□□□ -1.02
PTPN4-210ENST00000485247 TMEM2Q9UHN6 1383 aa8.67□□□□□ -1.02
PTPN4-210ENST00000485247 TIAM1Q13009 1591 aa8.66□□□□□ -1.02
PTPN4-210ENST00000485247 CCDC141Q6ZP82 1450 aa8.66□□□□□ -1.02
PTPN4-210ENST00000485247 FYCO1Q9BQS8 1478 aa8.66□□□□□ -1.02
PTPN4-210ENST00000485247 MTUS2Q5JR59 1369 aa8.66□□□□□ -1.02
PTPN4-210ENST00000485247 ITGBL1O95965 494 aaPredicted RBP8.66□□□□□ -1.02
PTPN4-210ENST00000485247 PPP4CP60510 307 aa8.66□□□□□ -1.02
PTPN4-210ENST00000485247 BCANQ96GW7 911 aa8.66□□□□□ -1.02
PTPN4-210ENST00000485247 C8orf37Q96NL8 207 aa8.66□□□□□ -1.02
PTPN4-210ENST00000485247 NKTRP30414 1462 aaKnown RBP8.65□□□□□ -1.02
PTPN4-210ENST00000485247 ATAD2Q6PL18 1390 aa8.65□□□□□ -1.02
PTPN4-210ENST00000485247 RNF40O75150 1001 aa8.65□□□□□ -1.02
PTPN4-210ENST00000485247 IFFO2Q5TF58 517 aa8.65□□□□□ -1.02
PTPN4-210ENST00000485247 C14orf37Q86TY3 774 aa8.65□□□□□ -1.02
PTPN4-210ENST00000485247 GNPATO15228 680 aa8.64□□□□□ -1.03
PTPN4-210ENST00000485247 TSPY4P0CV99 314 aa8.64□□□□□ -1.03
PTPN4-210ENST00000485247 TSPY10P0CW01 314 aa8.64□□□□□ -1.03
PTPN4-210ENST00000485247 RSPH4AQ5TD94 716 aa8.64□□□□□ -1.03
PTPN4-210ENST00000485247 GPIHBP1Q8IV16 184 aa8.64□□□□□ -1.03
PTPN4-210ENST00000485247 RBM46Q8TBY0 533 aaKnown RBP8.64□□□□□ -1.03
PTPN4-210ENST00000485247 SHPRHQ149N8 1683 aa8.64□□□□□ -1.03
PTPN4-210ENST00000485247 TET3O43151 1660 aa8.63□□□□□ -1.03
PTPN4-210ENST00000485247 PIK3C2BO00750 1634 aa8.62□□□□□ -1.03
PTPN4-210ENST00000485247 NWD1Q149M9 1564 aa8.62□□□□□ -1.03
PTPN4-210ENST00000485247 RCCD1A6NED2 376 aa8.62□□□□□ -1.03
PTPN4-210ENST00000485247 DNAJB2P25686 324 aa8.62□□□□□ -1.03
PTPN4-210ENST00000485247 PXYLP1Q8TE99 480 aa8.62□□□□□ -1.03
PTPN4-210ENST00000485247 NGLY1Q96IV0 654 aa8.62□□□□□ -1.03
PTPN4-210ENST00000485247 TMEM134Q9H6X4 195 aa8.62□□□□□ -1.03
PTPN4-210ENST00000485247 CEP152O94986 1710 aa8.62□□□□□ -1.03
PTPN4-210ENST00000485247 KDM5AP29375 1690 aaKnown RBP8.62□□□□□ -1.03
PTPN4-210ENST00000485247 AHDC1Q5TGY3 1603 aaPredicted RBP8.62□□□□□ -1.03
PTPN4-210ENST00000485247 ATF3P18847 181 aa8.61□□□□□ -1.03
PTPN4-210ENST00000485247 APLP1P51693 650 aa8.61□□□□□ -1.03
PTPN4-210ENST00000485247 HDGFP51858 240 aaKnown RBP8.61□□□□□ -1.03
PTPN4-210ENST00000485247 IDI1Q13907 227 aa8.61□□□□□ -1.03
PTPN4-210ENST00000485247 SLF2Q8IX21 1173 aa8.61□□□□□ -1.03
PTPN4-210ENST00000485247 CAMSAP2Q08AD1 1489 aa8.61□□□□□ -1.03
PTPN4-210ENST00000485247 EFCAB6Q5THR3 1501 aa8.6□□□□□ -1.03
PTPN4-210ENST00000485247 BRINP3Q76B58 766 aa8.6□□□□□ -1.03
PTPN4-210ENST00000485247 METTL3Q86U44 580 aaKnown RBP8.6□□□□□ -1.03
PTPN4-210ENST00000485247 MROH1Q8NDA8 1641 aa8.6□□□□□ -1.03
PTPN4-210ENST00000485247 DIP2AQ14689 1571 aa8.6□□□□□ -1.03
PTPN4-210ENST00000485247 A0A0G2JS52 829 aa8.59□□□□□ -1.03
PTPN4-210ENST00000485247 ADAMTS2O95450 1211 aa8.59□□□□□ -1.03
PTPN4-210ENST00000485247 C19orf44Q9H6X5 657 aa8.59□□□□□ -1.03
PTPN4-210ENST00000485247 ARHGAP31Q2M1Z3 1444 aa8.58□□□□□ -1.04
PTPN4-210ENST00000485247 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.58□□□□□ -1.04
PTPN4-210ENST00000485247 TJAP1Q5JTD0 557 aa8.58□□□□□ -1.04
PTPN4-210ENST00000485247 CCDC125Q86Z20 511 aa8.58□□□□□ -1.04
PTPN4-210ENST00000485247 MAST1Q9Y2H9 1570 aa8.57□□□□□ -1.04
PTPN4-210ENST00000485247 CEP162Q5TB80 1403 aa8.57□□□□□ -1.04
PTPN4-210ENST00000485247 NCOA3Q9Y6Q9 1424 aa8.57□□□□□ -1.04
PTPN4-210ENST00000485247 OATP04181 439 aa8.57□□□□□ -1.04
PTPN4-210ENST00000485247 KCNC4Q03721 635 aa8.57□□□□□ -1.04
PTPN4-210ENST00000485247 LRRC59Q96AG4 307 aaKnown RBP8.57□□□□□ -1.04
PTPN4-210ENST00000485247 PHOX2BQ99453 314 aa8.57□□□□□ -1.04
PTPN4-210ENST00000485247 MTRQ99707 1265 aa8.57□□□□□ -1.04
PTPN4-210ENST00000485247 USP21Q9UK80 565 aa8.57□□□□□ -1.04
PTPN4-210ENST00000485247 EIF2AK4Q9P2K8 1649 aaKnown RBP8.57□□□□□ -1.04
PTPN4-210ENST00000485247 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.57□□□□□ -1.04
PTPN4-210ENST00000485247 SETD5Q9C0A6 1442 aa8.56□□□□□ -1.04
PTPN4-210ENST00000485247 EHBP1L1Q8N3D4 1523 aa8.56□□□□□ -1.04
PTPN4-210ENST00000485247 PPP1R15AO75807 674 aaPredicted RBP8.56□□□□□ -1.04
PTPN4-210ENST00000485247 NLRP7Q8WX94 980 aa8.56□□□□□ -1.04
PTPN4-210ENST00000485247 DDX17Q92841 729 aaKnown RBP8.56□□□□□ -1.04
PTPN4-210ENST00000485247 TRPC5Q9UL62 973 aaPredicted RBP8.56□□□□□ -1.04
PTPN4-210ENST00000485247 ARHGEF5Q12774 1597 aa8.56□□□□□ -1.04
PTPN4-210ENST00000485247 CHD2O14647 1828 aaKnown RBP8.55□□□□□ -1.04
PTPN4-210ENST00000485247 SLC10A3P09131 477 aa8.55□□□□□ -1.04
PTPN4-210ENST00000485247 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.55□□□□□ -1.04
PTPN4-210ENST00000485247 PNPLA6Q8IY17 1366 aa8.54□□□□□ -1.04
PTPN4-210ENST00000485247 TULP1O00294 542 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms