RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 CDCA7Q9BWT1 371 aaPredicted RBP24.91■■□□□ 1.58
VIM-204ENST00000478746 AXIN2Q9Y2T1 843 aa24.91■■□□□ 1.58
VIM-204ENST00000478746 KIAA1210Q9ULL0 1709 aa24.91■■□□□ 1.58
VIM-204ENST00000478746 ATF5Q9Y2D1 282 aaPredicted RBP24.9■■□□□ 1.58
VIM-204ENST00000478746 WDR17Q8IZU2 1322 aa24.89■■□□□ 1.58
VIM-204ENST00000478746 LRRC37A3O60309 1634 aa24.89■■□□□ 1.57
VIM-204ENST00000478746 USP6P35125 1406 aa24.88■■□□□ 1.57
VIM-204ENST00000478746 STK32BQ9NY57 414 aa24.88■■□□□ 1.57
VIM-204ENST00000478746 CASZ1Q86V15 1759 aa24.88■■□□□ 1.57
VIM-204ENST00000478746 PTGER2P43116 358 aa24.87■■□□□ 1.57
VIM-204ENST00000478746 SLIT3O75094 1523 aa24.86■■□□□ 1.57
VIM-204ENST00000478746 TXNRD1Q16881 649 aa24.86■■□□□ 1.57
VIM-204ENST00000478746 BCL9O00512 1426 aa24.86■■□□□ 1.57
VIM-204ENST00000478746 EXOC5O00471 708 aa24.85■■□□□ 1.57
VIM-204ENST00000478746 CSB-PGBD3P0DP91 1061 aa24.84■■□□□ 1.57
VIM-204ENST00000478746 SLC15A2Q16348 729 aa24.84■■□□□ 1.57
VIM-204ENST00000478746 ARHGEF25Q86VW2 580 aa24.84■■□□□ 1.57
VIM-204ENST00000478746 ZNF784Q8NCA9 323 aaPredicted RBP24.84■■□□□ 1.57
VIM-204ENST00000478746 CARD10Q9BWT7 1032 aa24.84■■□□□ 1.57
VIM-204ENST00000478746 COL18A1P39060 1754 aa24.84■■□□□ 1.57
VIM-204ENST00000478746 KCNH5Q8NCM2 988 aa24.83■■□□□ 1.57
VIM-204ENST00000478746 SYT17Q9BSW7 474 aa24.82■■□□□ 1.56
VIM-204ENST00000478746 FHDC1Q9C0D6 1143 aaPredicted RBP24.82■■□□□ 1.56
VIM-204ENST00000478746 SOX12O15370 315 aa24.8■■□□□ 1.56
VIM-204ENST00000478746 ZNF692Q9BU19 519 aaPredicted RBP24.8■■□□□ 1.56
VIM-204ENST00000478746 AKAP12Q02952 1782 aa24.8■■□□□ 1.56
VIM-204ENST00000478746 CPSF1Q10570 1443 aaKnown RBP24.79■■□□□ 1.56
VIM-204ENST00000478746 MYOM1P52179 1685 aa24.79■■□□□ 1.56
VIM-204ENST00000478746 MTFR1LQ9H019 292 aa24.79■■□□□ 1.56
VIM-204ENST00000478746 TTC21BQ7Z4L5 1316 aa24.78■■□□□ 1.56
VIM-204ENST00000478746 EVC2Q86UK5 1308 aa24.78■■□□□ 1.56
VIM-204ENST00000478746 WNK3Q9BYP7 1800 aa24.77■■□□□ 1.56
VIM-204ENST00000478746 PIK3C2AO00443 1686 aa24.77■■□□□ 1.56
VIM-204ENST00000478746 QRICH2Q9H0J4 1663 aa24.77■■□□□ 1.56
VIM-204ENST00000478746 RGPD5Q99666 1765 aa24.76■■□□□ 1.55
VIM-204ENST00000478746 SGIP1Q9BQI5 828 aa24.74■■□□□ 1.55
VIM-204ENST00000478746 CCDC7Q96M83 1385 aa24.74■■□□□ 1.55
VIM-204ENST00000478746 UTRNP46939 3433 aa24.73■■□□□ 1.55
VIM-204ENST00000478746 TTC21AQ8NDW8 1320 aa24.72■■□□□ 1.55
VIM-204ENST00000478746 ACSBG1Q96GR2 724 aa24.72■■□□□ 1.55
VIM-204ENST00000478746 ARXQ96QS3 562 aa24.72■■□□□ 1.55
VIM-204ENST00000478746 CHD4Q14839 1912 aa24.69■■□□□ 1.54
VIM-204ENST00000478746 TNS2Q63HR2 1409 aa24.68■■□□□ 1.54
VIM-204ENST00000478746 SENP3-EIF4A1A0A087X0R7 540 aa24.67■■□□□ 1.54
VIM-204ENST00000478746 C1QTNF8P60827 252 aa24.66■■□□□ 1.54
VIM-204ENST00000478746 NLRP2Q9NX02 1062 aa24.66■■□□□ 1.54
VIM-204ENST00000478746 KTN1Q86UP2 1357 aaKnown RBP24.66■■□□□ 1.54
VIM-204ENST00000478746 TRPM1Q7Z4N2 1603 aa24.65■■□□□ 1.54
VIM-204ENST00000478746 KAT6BQ8WYB5 2073 aa24.65■■□□□ 1.54
VIM-204ENST00000478746 L3MBTL2Q969R5 705 aa24.64■■□□□ 1.54
VIM-204ENST00000478746 NFAT5O94916 1531 aa24.64■■□□□ 1.53
VIM-204ENST00000478746 NHSQ6T4R5 1651 aa24.63■■□□□ 1.53
VIM-204ENST00000478746 IL2RBP14784 551 aa24.63■■□□□ 1.53
VIM-204ENST00000478746 GPR162Q16538 588 aa24.63■■□□□ 1.53
VIM-204ENST00000478746 MAP3K5Q99683 1374 aa24.62■■□□□ 1.53
VIM-204ENST00000478746 ZNF827Q17R98 1081 aa24.61■■□□□ 1.53
VIM-204ENST00000478746 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.61■■□□□ 1.53
VIM-204ENST00000478746 ABCC6O95255 1503 aa24.61■■□□□ 1.53
VIM-204ENST00000478746 ERBB3P21860 1342 aa24.61■■□□□ 1.53
VIM-204ENST00000478746 LRRC4BQ9NT99 713 aa24.6■■□□□ 1.53
VIM-204ENST00000478746 SLC16A10Q8TF71 515 aa24.58■■□□□ 1.53
VIM-204ENST00000478746 USP31Q70CQ4 1352 aa24.57■■□□□ 1.52
VIM-204ENST00000478746 KLHL34Q8N239 644 aa24.57■■□□□ 1.52
VIM-204ENST00000478746 ANKRD24Q8TF21 1146 aa24.57■■□□□ 1.52
VIM-204ENST00000478746 PAPPAQ13219 1627 aa24.57■■□□□ 1.52
VIM-204ENST00000478746 BTAF1O14981 1849 aa24.56■■□□□ 1.52
VIM-204ENST00000478746 ROCK2O75116 1388 aaKnown RBP24.56■■□□□ 1.52
VIM-204ENST00000478746 POLD1P28340 1107 aa24.56■■□□□ 1.52
VIM-204ENST00000478746 NME9Q86XW9 330 aa24.55■■□□□ 1.52
VIM-204ENST00000478746 AKT1S1Q96B36 256 aa24.55■■□□□ 1.52
VIM-204ENST00000478746 SLC27A3Q5K4L6 730 aa24.54■■□□□ 1.52
VIM-204ENST00000478746 PELP1Q8IZL8 1130 aaKnown RBP24.53■■□□□ 1.52
VIM-204ENST00000478746 DDX54Q8TDD1 881 aaKnown RBP24.52■■□□□ 1.52
VIM-204ENST00000478746 GIGYF1O75420 1035 aaPredicted RBP24.51■■□□□ 1.51
VIM-204ENST00000478746 TFCP2L1Q9NZI6 479 aa24.51■■□□□ 1.51
VIM-204ENST00000478746 TMC1Q8TDI8 760 aa24.5■■□□□ 1.51
VIM-204ENST00000478746 SIN3AQ96ST3 1273 aa24.5■■□□□ 1.51
VIM-204ENST00000478746 MON2Q7Z3U7 1717 aa24.49■■□□□ 1.51
VIM-204ENST00000478746 HDGFL2Q7Z4V5 671 aaPredicted RBP24.49■■□□□ 1.51
VIM-204ENST00000478746 PNPLA7Q6ZV29 1317 aa24.49■■□□□ 1.51
VIM-204ENST00000478746 LTN1O94822 1766 aa24.48■■□□□ 1.51
VIM-204ENST00000478746 SBNO2Q9Y2G9 1366 aa24.48■■□□□ 1.51
VIM-204ENST00000478746 NEUROD1Q13562 356 aa24.47■■□□□ 1.51
VIM-204ENST00000478746 SYTL4Q96C24 671 aaPredicted RBP24.47■■□□□ 1.51
VIM-204ENST00000478746 KCNQ4P56696 695 aa24.46■■□□□ 1.51
VIM-204ENST00000478746 PRIM1P49642 420 aaKnown RBP24.45■■□□□ 1.5
VIM-204ENST00000478746 NLGN2Q8NFZ4 835 aa24.45■■□□□ 1.5
VIM-204ENST00000478746 IP6K1Q92551 441 aa24.45■■□□□ 1.5
VIM-204ENST00000478746 LTV1Q96GA3 475 aaPredicted RBP24.45■■□□□ 1.5
VIM-204ENST00000478746 SLC12A5Q9H2X9 1139 aa24.45■■□□□ 1.5
VIM-204ENST00000478746 USP54Q70EL1 1684 aa24.44■■□□□ 1.5
VIM-204ENST00000478746 CD163L1Q9NR16 1453 aa24.44■■□□□ 1.5
VIM-204ENST00000478746 QSER1Q2KHR3 1735 aa24.44■■□□□ 1.5
VIM-204ENST00000478746 GOLGB1Q14789 3259 aaKnown RBP24.43■■□□□ 1.5
VIM-204ENST00000478746 TERF2IPQ9NYB0 399 aa24.42■■□□□ 1.5
VIM-204ENST00000478746 GRIN3BO60391 1043 aa24.41■■□□□ 1.5
VIM-204ENST00000478746 EDC4Q6P2E9 1401 aaKnown RBP24.41■■□□□ 1.5
VIM-204ENST00000478746 COL24A1Q17RW2 1714 aa24.41■■□□□ 1.5
VIM-204ENST00000478746 MSH5O43196 834 aa24.4■■□□□ 1.5
VIM-204ENST00000478746 IFFO2Q5TF58 517 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 160.8 ms