RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 LRRCC1Q9C099 1032 aa17.81■□□□□ 0.44
HDAC6-220ENST00000477528 YTHDC2Q9H6S0 1430 aaKnown RBP17.81■□□□□ 0.44
HDAC6-220ENST00000477528 PCDHB15Q9Y5E8 787 aa17.81■□□□□ 0.44
HDAC6-220ENST00000477528 TTC21BQ7Z4L5 1316 aa17.81■□□□□ 0.44
HDAC6-220ENST00000477528 SBNO2Q9Y2G9 1366 aa17.81■□□□□ 0.44
HDAC6-220ENST00000477528 PTPRTO14522 1441 aa17.81■□□□□ 0.44
HDAC6-220ENST00000477528 NRDCO43847 1150 aa17.81■□□□□ 0.44
HDAC6-220ENST00000477528 DRC7Q8IY82 874 aa17.81■□□□□ 0.44
HDAC6-220ENST00000477528 CLASRPQ8N2M8 674 aaKnown RBP17.81■□□□□ 0.44
HDAC6-220ENST00000477528 KIF3AQ9Y496 699 aa17.81■□□□□ 0.44
HDAC6-220ENST00000477528 HDAC1Q13547 482 aaPredicted RBP17.8■□□□□ 0.44
HDAC6-220ENST00000477528 SRCIN1Q9C0H9 1055 aa17.8■□□□□ 0.44
HDAC6-220ENST00000477528 ZNF530Q6P9A1 599 aaPredicted RBP17.8■□□□□ 0.44
HDAC6-220ENST00000477528 MBIPQ9NS73 344 aa17.8■□□□□ 0.44
HDAC6-220ENST00000477528 AIMP1Q12904 312 aaKnown RBP17.8■□□□□ 0.44
HDAC6-220ENST00000477528 PROSER2Q86WR7 435 aaPredicted RBP17.8■□□□□ 0.44
HDAC6-220ENST00000477528 CNTROBQ8N137 903 aa17.8■□□□□ 0.44
HDAC6-220ENST00000477528 MAGI2Q86UL8 1455 aa17.8■□□□□ 0.44
HDAC6-220ENST00000477528 PLXNC1O60486 1568 aa17.8■□□□□ 0.44
HDAC6-220ENST00000477528 PPIP5K1Q6PFW1 1433 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 ZCCHC11Q5TAX3 1644 aaKnown RBP17.79■□□□□ 0.44
HDAC6-220ENST00000477528 K7ELQ4 463 aaPredicted RBP17.79■□□□□ 0.44
HDAC6-220ENST00000477528 CHAF1AQ13111 956 aaPredicted RBP17.79■□□□□ 0.44
HDAC6-220ENST00000477528 GNL2Q13823 731 aaKnown RBP17.79■□□□□ 0.44
HDAC6-220ENST00000477528 ARHGAP45Q92619 1136 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 CROCC2H7BZ55 1655 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 ZFYVE9O95405 1425 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 MCM2P49736 904 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 PRDM15P57071 1507 aaPredicted RBP17.79■□□□□ 0.44
HDAC6-220ENST00000477528 NPATQ14207 1427 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 RNF20Q5VTR2 975 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 POLKQ9UBT6 870 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 FBLN1P23142 703 aa17.79■□□□□ 0.44
HDAC6-220ENST00000477528 MCTP1Q6DN14 999 aa17.78■□□□□ 0.44
HDAC6-220ENST00000477528 KDM5AP29375 1690 aaKnown RBP17.78■□□□□ 0.44
HDAC6-220ENST00000477528 ACEP12821 1306 aa17.78■□□□□ 0.44
HDAC6-220ENST00000477528 EVA1CP58658 441 aa17.78■□□□□ 0.44
HDAC6-220ENST00000477528 MIS18AQ9NYP9 233 aa17.78■□□□□ 0.44
HDAC6-220ENST00000477528 FOXD4L6Q3SYB3 417 aaPredicted RBP17.78■□□□□ 0.44
HDAC6-220ENST00000477528 FOXD4L3Q6VB84 417 aaPredicted RBP17.78■□□□□ 0.44
HDAC6-220ENST00000477528 NEO1Q92859 1461 aa17.77■□□□□ 0.44
HDAC6-220ENST00000477528 MRE11P49959 708 aa17.77■□□□□ 0.44
HDAC6-220ENST00000477528 NEK4P51957 841 aa17.77■□□□□ 0.44
HDAC6-220ENST00000477528 CIZ1Q9ULV3 898 aaPredicted RBP17.77■□□□□ 0.44
HDAC6-220ENST00000477528 C8orf34Q49A92 452 aa17.77■□□□□ 0.43
HDAC6-220ENST00000477528 CEBPAP49715 358 aaPredicted RBP17.76■□□□□ 0.43
HDAC6-220ENST00000477528 IQGAP3Q86VI3 1631 aa17.76■□□□□ 0.43
HDAC6-220ENST00000477528 CHMP4CQ96CF2 233 aa17.76■□□□□ 0.43
HDAC6-220ENST00000477528 KCNH5Q8NCM2 988 aa17.76■□□□□ 0.43
HDAC6-220ENST00000477528 CCDC9Q9Y3X0 531 aaKnown RBP17.76■□□□□ 0.43
HDAC6-220ENST00000477528 MYOM2P54296 1465 aa17.76■□□□□ 0.43
HDAC6-220ENST00000477528 PTPRCP08575 1304 aa17.75■□□□□ 0.43
HDAC6-220ENST00000477528 LRRFIP1Q32MZ4 808 aaKnown RBP17.75■□□□□ 0.43
HDAC6-220ENST00000477528 ERC1Q8IUD2 1116 aa17.75■□□□□ 0.43
HDAC6-220ENST00000477528 SYNMO15061 1565 aa17.75■□□□□ 0.43
HDAC6-220ENST00000477528 RLBP1P12271 317 aa17.74■□□□□ 0.43
HDAC6-220ENST00000477528 SMC3Q9UQE7 1217 aa17.74■□□□□ 0.43
HDAC6-220ENST00000477528 FAM83GA6ND36 823 aa17.74■□□□□ 0.43
HDAC6-220ENST00000477528 MCM4P33991 863 aa17.74■□□□□ 0.43
HDAC6-220ENST00000477528 TBC1D32Q96NH3 1257 aa17.74■□□□□ 0.43
HDAC6-220ENST00000477528 CFAP74Q9C0B2 1584 aa17.74■□□□□ 0.43
HDAC6-220ENST00000477528 NCBP3Q53F19 620 aaKnown RBP17.73■□□□□ 0.43
HDAC6-220ENST00000477528 CWC22Q9HCG8 908 aaKnown RBP17.73■□□□□ 0.43
HDAC6-220ENST00000477528 BMP2KLQ5H9B9 411 aa17.73■□□□□ 0.43
HDAC6-220ENST00000477528 H3BQV1 296 aa17.73■□□□□ 0.43
HDAC6-220ENST00000477528 IFFO2Q5TF58 517 aa17.73■□□□□ 0.43
HDAC6-220ENST00000477528 TATP17735 454 aaPredicted RBP17.73■□□□□ 0.43
HDAC6-220ENST00000477528 TAF7Q15545 349 aaPredicted RBP17.73■□□□□ 0.43
HDAC6-220ENST00000477528 FAM184AQ8NB25 1140 aa17.73■□□□□ 0.43
HDAC6-220ENST00000477528 TBC1D2Q9BYX2 928 aa17.73■□□□□ 0.43
HDAC6-220ENST00000477528 KDM2BQ8NHM5 1336 aa17.73■□□□□ 0.43
HDAC6-220ENST00000477528 TNNQ9UQP3 1299 aa17.72■□□□□ 0.43
HDAC6-220ENST00000477528 UNC13BO14795 1591 aa17.72■□□□□ 0.43
HDAC6-220ENST00000477528 ERVK-7P63135 1459 aa17.72■□□□□ 0.43
HDAC6-220ENST00000477528 ERCC6L2Q5T890 1561 aa17.72■□□□□ 0.43
HDAC6-220ENST00000477528 ZFYVE16Q7Z3T8 1539 aa17.72■□□□□ 0.43
HDAC6-220ENST00000477528 BCORL1Q5H9F3 1711 aa17.71■□□□□ 0.43
HDAC6-220ENST00000477528 TTC21AQ8NDW8 1320 aa17.71■□□□□ 0.43
HDAC6-220ENST00000477528 BTBD11A6QL63 1104 aa17.71■□□□□ 0.43
HDAC6-220ENST00000477528 PHF8Q9UPP1 1060 aa17.71■□□□□ 0.43
HDAC6-220ENST00000477528 NUCB1Q02818 461 aa17.71■□□□□ 0.43
HDAC6-220ENST00000477528 DMRT2Q9Y5R5 561 aa17.71■□□□□ 0.43
HDAC6-220ENST00000477528 SRGAP3O43295 1099 aa17.7■□□□□ 0.42
HDAC6-220ENST00000477528 MRPL50Q8N5N7 158 aaKnown RBP17.7■□□□□ 0.42
HDAC6-220ENST00000477528 EXOC6BQ9Y2D4 811 aa17.7■□□□□ 0.42
HDAC6-220ENST00000477528 SHROOM2Q13796 1616 aa17.7■□□□□ 0.42
HDAC6-220ENST00000477528 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.69■□□□□ 0.42
HDAC6-220ENST00000477528 ARAP3Q8WWN8 1544 aa17.69■□□□□ 0.42
HDAC6-220ENST00000477528 HIP1O00291 1037 aa17.69■□□□□ 0.42
HDAC6-220ENST00000477528 RSPH6AQ9H0K4 717 aa17.69■□□□□ 0.42
HDAC6-220ENST00000477528 TRPM1Q7Z4N2 1603 aa17.69■□□□□ 0.42
HDAC6-220ENST00000477528 HSP90AB2PQ58FF8 381 aa17.69■□□□□ 0.42
HDAC6-220ENST00000477528 ZRANB1Q9UGI0 708 aa17.69■□□□□ 0.42
HDAC6-220ENST00000477528 FSD1Q9BTV5 496 aa17.68■□□□□ 0.42
HDAC6-220ENST00000477528 BRPF3Q9ULD4 1205 aa17.68■□□□□ 0.42
HDAC6-220ENST00000477528 UGGT1Q9NYU2 1555 aa17.68■□□□□ 0.42
HDAC6-220ENST00000477528 MLH3Q9UHC1 1453 aa17.68■□□□□ 0.42
HDAC6-220ENST00000477528 ISY1Q9ULR0 285 aaKnown RBP17.68■□□□□ 0.42
HDAC6-220ENST00000477528 PSMA5P28066 241 aa17.68■□□□□ 0.42
HDAC6-220ENST00000477528 F6X3S4 739 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms