RNA–Protein interactions for RNA: ENST00000470006.1

NCKIPSD-209, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 2

Gene NCKIPSD, Length 814 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-209ENST00000470006 MARCH10Q8NA82 808 aaPredicted RBP27.55■■■□□ 2
NCKIPSD-209ENST00000470006 MYOM1P52179 1685 aa27.54■■■□□ 2
NCKIPSD-209ENST00000470006 CSB-PGBD3P0DP91 1061 aa27.53■■■□□ 2
NCKIPSD-209ENST00000470006 AKAP12Q02952 1782 aa27.53■■■□□ 2
NCKIPSD-209ENST00000470006 BRD4O60885 1362 aaPredicted RBP27.52■■■□□ 2
NCKIPSD-209ENST00000470006 PTGER2P43116 358 aa27.52■■■□□ 2
NCKIPSD-209ENST00000470006 CDCA7Q9BWT1 371 aaPredicted RBP27.52■■■□□ 2
NCKIPSD-209ENST00000470006 CABP1Q9NZU7 370 aa27.52■■■□□ 2
NCKIPSD-209ENST00000470006 WDR17Q8IZU2 1322 aa27.51■■□□□ 1.99
NCKIPSD-209ENST00000470006 CENPJQ9HC77 1338 aaPredicted RBP27.51■■□□□ 1.99
NCKIPSD-209ENST00000470006 TXNRD1Q16881 649 aa27.51■■□□□ 1.99
NCKIPSD-209ENST00000470006 NBPF1Q3BBV0 1214 aa27.51■■□□□ 1.99
NCKIPSD-209ENST00000470006 FHDC1Q9C0D6 1143 aaPredicted RBP27.51■■□□□ 1.99
NCKIPSD-209ENST00000470006 SYT17Q9BSW7 474 aa27.5■■□□□ 1.99
NCKIPSD-209ENST00000470006 SOX12O15370 315 aa27.49■■□□□ 1.99
NCKIPSD-209ENST00000470006 SLC15A2Q16348 729 aa27.49■■□□□ 1.99
NCKIPSD-209ENST00000470006 AXIN2Q9Y2T1 843 aa27.49■■□□□ 1.99
NCKIPSD-209ENST00000470006 KIAA1210Q9ULL0 1709 aa27.48■■□□□ 1.99
NCKIPSD-209ENST00000470006 SENP3-EIF4A1A0A087X0R7 540 aa27.48■■□□□ 1.99
NCKIPSD-209ENST00000470006 USP6P35125 1406 aa27.48■■□□□ 1.99
NCKIPSD-209ENST00000470006 WNK3Q9BYP7 1800 aa27.48■■□□□ 1.99
NCKIPSD-209ENST00000470006 EXOC5O00471 708 aa27.47■■□□□ 1.99
NCKIPSD-209ENST00000470006 SLIT3O75094 1523 aa27.46■■□□□ 1.99
NCKIPSD-209ENST00000470006 UTRNP46939 3433 aa27.45■■□□□ 1.99
NCKIPSD-209ENST00000470006 MTFR1LQ9H019 292 aa27.45■■□□□ 1.98
NCKIPSD-209ENST00000470006 CHD4Q14839 1912 aa27.44■■□□□ 1.98
NCKIPSD-209ENST00000470006 COL18A1P39060 1754 aa27.44■■□□□ 1.98
NCKIPSD-209ENST00000470006 CARD10Q9BWT7 1032 aa27.43■■□□□ 1.98
NCKIPSD-209ENST00000470006 RGPD5Q99666 1765 aa27.43■■□□□ 1.98
NCKIPSD-209ENST00000470006 BCL9O00512 1426 aa27.42■■□□□ 1.98
NCKIPSD-209ENST00000470006 CPSF1Q10570 1443 aaKnown RBP27.41■■□□□ 1.98
NCKIPSD-209ENST00000470006 QRICH2Q9H0J4 1663 aa27.41■■□□□ 1.98
NCKIPSD-209ENST00000470006 KCNH5Q8NCM2 988 aa27.41■■□□□ 1.98
NCKIPSD-209ENST00000470006 PIK3C2AO00443 1686 aa27.4■■□□□ 1.98
NCKIPSD-209ENST00000470006 ARHGEF25Q86VW2 580 aa27.4■■□□□ 1.98
NCKIPSD-209ENST00000470006 ACSBG1Q96GR2 724 aa27.39■■□□□ 1.98
NCKIPSD-209ENST00000470006 ARXQ96QS3 562 aa27.39■■□□□ 1.98
NCKIPSD-209ENST00000470006 C1QTNF8P60827 252 aa27.38■■□□□ 1.97
NCKIPSD-209ENST00000470006 KAT6BQ8WYB5 2073 aa27.37■■□□□ 1.97
NCKIPSD-209ENST00000470006 GPR162Q16538 588 aa27.35■■□□□ 1.97
NCKIPSD-209ENST00000470006 TTC21BQ7Z4L5 1316 aa27.35■■□□□ 1.97
NCKIPSD-209ENST00000470006 EVC2Q86UK5 1308 aa27.35■■□□□ 1.97
NCKIPSD-209ENST00000470006 KLHL34Q8N239 644 aa27.34■■□□□ 1.97
NCKIPSD-209ENST00000470006 SGIP1Q9BQI5 828 aa27.34■■□□□ 1.97
NCKIPSD-209ENST00000470006 ZNF692Q9BU19 519 aaPredicted RBP27.34■■□□□ 1.97
NCKIPSD-209ENST00000470006 CCDC7Q96M83 1385 aa27.34■■□□□ 1.97
NCKIPSD-209ENST00000470006 TNS2Q63HR2 1409 aa27.31■■□□□ 1.96
NCKIPSD-209ENST00000470006 PELP1Q8IZL8 1130 aaKnown RBP27.3■■□□□ 1.96
NCKIPSD-209ENST00000470006 NLRP2Q9NX02 1062 aa27.29■■□□□ 1.96
NCKIPSD-209ENST00000470006 NHSQ6T4R5 1651 aa27.29■■□□□ 1.96
NCKIPSD-209ENST00000470006 TTC21AQ8NDW8 1320 aa27.28■■□□□ 1.96
NCKIPSD-209ENST00000470006 GIGYF1O75420 1035 aaPredicted RBP27.25■■□□□ 1.95
NCKIPSD-209ENST00000470006 TRPM1Q7Z4N2 1603 aa27.25■■□□□ 1.95
NCKIPSD-209ENST00000470006 ZNF827Q17R98 1081 aa27.24■■□□□ 1.95
NCKIPSD-209ENST00000470006 KTN1Q86UP2 1357 aaKnown RBP27.23■■□□□ 1.95
NCKIPSD-209ENST00000470006 MAP3K5Q99683 1374 aa27.23■■□□□ 1.95
NCKIPSD-209ENST00000470006 IL2RBP14784 551 aa27.23■■□□□ 1.95
NCKIPSD-209ENST00000470006 POLD1P28340 1107 aa27.23■■□□□ 1.95
NCKIPSD-209ENST00000470006 BTAF1O14981 1849 aa27.23■■□□□ 1.95
NCKIPSD-209ENST00000470006 NFAT5O94916 1531 aa27.22■■□□□ 1.95
NCKIPSD-209ENST00000470006 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.22■■□□□ 1.95
NCKIPSD-209ENST00000470006 ABCC6O95255 1503 aa27.21■■□□□ 1.95
NCKIPSD-209ENST00000470006 PAPPAQ13219 1627 aa27.19■■□□□ 1.94
NCKIPSD-209ENST00000470006 LRRC4BQ9NT99 713 aa27.19■■□□□ 1.94
NCKIPSD-209ENST00000470006 ERBB3P21860 1342 aa27.18■■□□□ 1.94
NCKIPSD-209ENST00000470006 SLC16A10Q8TF71 515 aa27.17■■□□□ 1.94
NCKIPSD-209ENST00000470006 ANKRD24Q8TF21 1146 aa27.16■■□□□ 1.94
NCKIPSD-209ENST00000470006 DDX54Q8TDD1 881 aaKnown RBP27.15■■□□□ 1.94
NCKIPSD-209ENST00000470006 TFCP2L1Q9NZI6 479 aa27.15■■□□□ 1.94
NCKIPSD-209ENST00000470006 IFFO2Q5TF58 517 aa27.14■■□□□ 1.94
NCKIPSD-209ENST00000470006 SLC27A3Q5K4L6 730 aa27.13■■□□□ 1.93
NCKIPSD-209ENST00000470006 L3MBTL2Q969R5 705 aa27.13■■□□□ 1.93
NCKIPSD-209ENST00000470006 AKT1S1Q96B36 256 aa27.13■■□□□ 1.93
NCKIPSD-209ENST00000470006 SYTL4Q96C24 671 aaPredicted RBP27.13■■□□□ 1.93
NCKIPSD-209ENST00000470006 LTN1O94822 1766 aa27.12■■□□□ 1.93
NCKIPSD-209ENST00000470006 NME9Q86XW9 330 aa27.12■■□□□ 1.93
NCKIPSD-209ENST00000470006 ROCK2O75116 1388 aaKnown RBP27.11■■□□□ 1.93
NCKIPSD-209ENST00000470006 GOLGB1Q14789 3259 aaKnown RBP27.11■■□□□ 1.93
NCKIPSD-209ENST00000470006 KCNQ4P56696 695 aa27.1■■□□□ 1.93
NCKIPSD-209ENST00000470006 NLGN2Q8NFZ4 835 aa27.1■■□□□ 1.93
NCKIPSD-209ENST00000470006 PNPLA7Q6ZV29 1317 aa27.1■■□□□ 1.93
NCKIPSD-209ENST00000470006 MSH5O43196 834 aa27.09■■□□□ 1.93
NCKIPSD-209ENST00000470006 TMC1Q8TDI8 760 aa27.09■■□□□ 1.93
NCKIPSD-209ENST00000470006 MON2Q7Z3U7 1717 aa27.08■■□□□ 1.93
NCKIPSD-209ENST00000470006 USP31Q70CQ4 1352 aa27.08■■□□□ 1.93
NCKIPSD-209ENST00000470006 LTV1Q96GA3 475 aaPredicted RBP27.07■■□□□ 1.92
NCKIPSD-209ENST00000470006 QSER1Q2KHR3 1735 aa27.07■■□□□ 1.92
NCKIPSD-209ENST00000470006 GRIN3BO60391 1043 aa27.05■■□□□ 1.92
NCKIPSD-209ENST00000470006 HDGFL2Q7Z4V5 671 aaPredicted RBP27.05■■□□□ 1.92
NCKIPSD-209ENST00000470006 PRIM1P49642 420 aaKnown RBP27.04■■□□□ 1.92
NCKIPSD-209ENST00000470006 CEP350Q5VT06 3117 aa27.03■■□□□ 1.92
NCKIPSD-209ENST00000470006 TUBGCP6Q96RT7 1819 aa27.02■■□□□ 1.92
NCKIPSD-209ENST00000470006 SHANK3Q9BYB0 1731 aa27.02■■□□□ 1.92
NCKIPSD-209ENST00000470006 YBX3P16989 372 aaKnown RBP eCLIP27■■□□□ 1.91
NCKIPSD-209ENST00000470006 COL24A1Q17RW2 1714 aa26.99■■□□□ 1.91
NCKIPSD-209ENST00000470006 SBNO2Q9Y2G9 1366 aa26.99■■□□□ 1.91
NCKIPSD-209ENST00000470006 USP54Q70EL1 1684 aa26.99■■□□□ 1.91
NCKIPSD-209ENST00000470006 NEUROD1Q13562 356 aa26.99■■□□□ 1.91
NCKIPSD-209ENST00000470006 SIN3AQ96ST3 1273 aa26.98■■□□□ 1.91
NCKIPSD-209ENST00000470006 CCNL1Q9UK58 526 aaPredicted RBP26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms