RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 IL27Q8NEV9 243 aa12.54□□□□□ -0.4
HDAC3-205ENST00000469550 NUDT16Q96DE0 195 aaKnown RBP12.54□□□□□ -0.4
HDAC3-205ENST00000469550 TNS1Q9HBL0 1735 aaKnown RBP12.54□□□□□ -0.4
HDAC3-205ENST00000469550 SF3B2Q13435 895 aaKnown RBP12.52□□□□□ -0.4
HDAC3-205ENST00000469550 DISP2A7MBM2 1401 aa12.52□□□□□ -0.4
HDAC3-205ENST00000469550 LMO7Q8WWI1 1683 aa12.52□□□□□ -0.41
HDAC3-205ENST00000469550 ST20-MTHFSA0A0A6YYL1 179 aa12.52□□□□□ -0.41
HDAC3-205ENST00000469550 PLEKHG3A1L390 1219 aa12.52□□□□□ -0.41
HDAC3-205ENST00000469550 PLEKHG5O94827 1062 aa12.51□□□□□ -0.41
HDAC3-205ENST00000469550 CNGB1Q14028 1251 aaPredicted RBP12.51□□□□□ -0.41
HDAC3-205ENST00000469550 FAM98CQ17RN3 349 aaKnown RBP12.51□□□□□ -0.41
HDAC3-205ENST00000469550 DEFB132Q7Z7B7 95 aa12.51□□□□□ -0.41
HDAC3-205ENST00000469550 CDK19Q9BWU1 502 aa12.51□□□□□ -0.41
HDAC3-205ENST00000469550 LAS1LQ9Y4W2 734 aaKnown RBP12.51□□□□□ -0.41
HDAC3-205ENST00000469550 QRICH2Q9H0J4 1663 aa12.51□□□□□ -0.41
HDAC3-205ENST00000469550 KIAA0232Q92628 1395 aa12.51□□□□□ -0.41
HDAC3-205ENST00000469550 PRDM11Q9NQV5 511 aa12.5□□□□□ -0.41
HDAC3-205ENST00000469550 SALL2Q9Y467 1007 aaPredicted RBP12.5□□□□□ -0.41
HDAC3-205ENST00000469550 CCDC61Q9Y6R9 512 aa12.5□□□□□ -0.41
HDAC3-205ENST00000469550 USP19O94966 1318 aa12.5□□□□□ -0.41
HDAC3-205ENST00000469550 CPDO75976 1380 aa12.49□□□□□ -0.41
HDAC3-205ENST00000469550 SPATA31A1Q5TZJ5 1347 aa12.49□□□□□ -0.41
HDAC3-205ENST00000469550 BAG6P46379 1132 aa12.49□□□□□ -0.41
HDAC3-205ENST00000469550 ACEP12821 1306 aa12.49□□□□□ -0.41
HDAC3-205ENST00000469550 PER1O15534 1290 aaPredicted RBP12.49□□□□□ -0.41
HDAC3-205ENST00000469550 GSE1Q14687 1217 aa12.49□□□□□ -0.41
HDAC3-205ENST00000469550 SSH2Q76I76 1423 aa12.48□□□□□ -0.41
HDAC3-205ENST00000469550 CAMTA1Q9Y6Y1 1673 aa12.47□□□□□ -0.41
HDAC3-205ENST00000469550 A0A0G2JS52 829 aa12.47□□□□□ -0.41
HDAC3-205ENST00000469550 NBPF1Q3BBV0 1214 aa12.47□□□□□ -0.41
HDAC3-205ENST00000469550 TRPM1Q7Z4N2 1603 aa12.47□□□□□ -0.41
HDAC3-205ENST00000469550 PPIP5K1Q6PFW1 1433 aa12.46□□□□□ -0.41
HDAC3-205ENST00000469550 CENPJQ9HC77 1338 aaPredicted RBP12.46□□□□□ -0.41
HDAC3-205ENST00000469550 SENP3-EIF4A1A0A087X0R7 540 aa12.46□□□□□ -0.41
HDAC3-205ENST00000469550 BARGINQ6ZT62 677 aa12.46□□□□□ -0.41
HDAC3-205ENST00000469550 SLIT3O75094 1523 aa12.46□□□□□ -0.42
HDAC3-205ENST00000469550 KDM2BQ8NHM5 1336 aa12.46□□□□□ -0.42
HDAC3-205ENST00000469550 PARP4Q9UKK3 1724 aaKnown RBP12.45□□□□□ -0.42
HDAC3-205ENST00000469550 RREB1Q92766 1687 aa12.45□□□□□ -0.42
HDAC3-205ENST00000469550 NFKBIBQ15653 356 aa12.45□□□□□ -0.42
HDAC3-205ENST00000469550 CDCA7LQ96GN5 454 aa12.45□□□□□ -0.42
HDAC3-205ENST00000469550 CRBNQ96SW2 442 aa12.45□□□□□ -0.42
HDAC3-205ENST00000469550 CHRNA2Q15822 529 aa12.44□□□□□ -0.42
HDAC3-205ENST00000469550 CENPQQ7L2Z9 268 aaPredicted RBP12.44□□□□□ -0.42
HDAC3-205ENST00000469550 USP6P35125 1406 aa12.44□□□□□ -0.42
HDAC3-205ENST00000469550 AKAP12Q02952 1782 aa12.43□□□□□ -0.42
HDAC3-205ENST00000469550 PIK3C2AO00443 1686 aa12.43□□□□□ -0.42
HDAC3-205ENST00000469550 COL5A2P05997 1499 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-205ENST00000469550 ZC3H6P61129 1189 aaKnown RBP12.43□□□□□ -0.42
HDAC3-205ENST00000469550 FAM196AQ6ZSG2 479 aa12.43□□□□□ -0.42
HDAC3-205ENST00000469550 ABTB2Q8N961 1025 aa12.43□□□□□ -0.42
HDAC3-205ENST00000469550 COL18A1P39060 1754 aa12.42□□□□□ -0.42
HDAC3-205ENST00000469550 WNK3Q9BYP7 1800 aa12.42□□□□□ -0.42
HDAC3-205ENST00000469550 SRPK2P78362 688 aaKnown RBP12.41□□□□□ -0.42
HDAC3-205ENST00000469550 FAM161AQ3B820 660 aa12.41□□□□□ -0.42
HDAC3-205ENST00000469550 NUTM2GQ5VZR2 741 aa12.41□□□□□ -0.42
HDAC3-205ENST00000469550 STRN4Q9NRL3 753 aa12.41□□□□□ -0.42
HDAC3-205ENST00000469550 THRAP3Q9Y2W1 955 aaKnown RBP12.41□□□□□ -0.42
HDAC3-205ENST00000469550 NUP188Q5SRE5 1749 aa12.41□□□□□ -0.42
HDAC3-205ENST00000469550 PEAK1Q9H792 1746 aa12.41□□□□□ -0.42
HDAC3-205ENST00000469550 RGPD3A6NKT7 1758 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-205ENST00000469550 RGPD4Q7Z3J3 1758 aa12.41□□□□□ -0.42
HDAC3-205ENST00000469550 EN1Q05925 392 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-205ENST00000469550 DAXXQ9UER7 740 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-205ENST00000469550 PLIN1O60240 522 aa12.4□□□□□ -0.42
HDAC3-205ENST00000469550 FAM182BQ5T319 152 aa12.4□□□□□ -0.42
HDAC3-205ENST00000469550 TCP11L2Q8N4U5 519 aa12.4□□□□□ -0.42
HDAC3-205ENST00000469550 RTN4Q9NQC3 1192 aaKnown RBP12.4□□□□□ -0.42
HDAC3-205ENST00000469550 AATKQ6ZMQ8 1374 aa12.4□□□□□ -0.42
HDAC3-205ENST00000469550 CRB1P82279 1406 aa12.4□□□□□ -0.43
HDAC3-205ENST00000469550 GCP02774 474 aa12.39□□□□□ -0.43
HDAC3-205ENST00000469550 CAMKK2Q96RR4 588 aa12.39□□□□□ -0.43
HDAC3-205ENST00000469550 CABP2Q9NPB3 220 aa12.39□□□□□ -0.43
HDAC3-205ENST00000469550 LRRC37A3O60309 1634 aa12.39□□□□□ -0.43
HDAC3-205ENST00000469550 EVA1CP58658 441 aa12.39□□□□□ -0.43
HDAC3-205ENST00000469550 LARP1Q6PKG0 1096 aaKnown RBP12.39□□□□□ -0.43
HDAC3-205ENST00000469550 USP54Q70EL1 1684 aa12.39□□□□□ -0.43
HDAC3-205ENST00000469550 ABCC6O95255 1503 aa12.38□□□□□ -0.43
HDAC3-205ENST00000469550 EVC2Q86UK5 1308 aa12.38□□□□□ -0.43
HDAC3-205ENST00000469550 MON2Q7Z3U7 1717 aa12.38□□□□□ -0.43
HDAC3-205ENST00000469550 SBF2Q86WG5 1849 aa12.38□□□□□ -0.43
HDAC3-205ENST00000469550 PSDA5PKW4 1024 aaPredicted RBP12.38□□□□□ -0.43
HDAC3-205ENST00000469550 C8orf34Q49A92 452 aa12.38□□□□□ -0.43
HDAC3-205ENST00000469550 FRAT1Q92837 279 aaPredicted RBP12.38□□□□□ -0.43
HDAC3-205ENST00000469550 TESK2Q96S53 571 aa12.38□□□□□ -0.43
HDAC3-205ENST00000469550 BRPF3Q9ULD4 1205 aa12.38□□□□□ -0.43
HDAC3-205ENST00000469550 EZH2Q15910 746 aaKnown RBP12.37□□□□□ -0.43
HDAC3-205ENST00000469550 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.37□□□□□ -0.43
HDAC3-205ENST00000469550 CABP1Q9NZU7 370 aa12.37□□□□□ -0.43
HDAC3-205ENST00000469550 TRIM37O94972 964 aa12.36□□□□□ -0.43
HDAC3-205ENST00000469550 SBNO2Q9Y2G9 1366 aa12.36□□□□□ -0.43
HDAC3-205ENST00000469550 ZNF521Q96K83 1311 aa12.36□□□□□ -0.43
HDAC3-205ENST00000469550 CPSF1Q10570 1443 aaKnown RBP12.36□□□□□ -0.43
HDAC3-205ENST00000469550 NLRP6P59044 892 aa12.35□□□□□ -0.43
HDAC3-205ENST00000469550 DUSP27Q5VZP5 1158 aa12.35□□□□□ -0.43
HDAC3-205ENST00000469550 BCL9O00512 1426 aa12.35□□□□□ -0.43
HDAC3-205ENST00000469550 NFAT5O94916 1531 aa12.35□□□□□ -0.43
HDAC3-205ENST00000469550 SRCAPQ6ZRS2 3230 aa12.35□□□□□ -0.43
HDAC3-205ENST00000469550 OVOS2A0A0G2JMS6 1433 aa12.34□□□□□ -0.43
HDAC3-205ENST00000469550 OVOS2A0A0J9YW53 1432 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms