RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 TRMT44Q8IYL2 757 aaKnown RBP7.93□□□□□ -1.14
CDC42BPA-211ENST00000466538 FAM174AQ8TBP5 190 aa7.93□□□□□ -1.14
CDC42BPA-211ENST00000466538 FOXJ1Q92949 421 aa7.93□□□□□ -1.14
CDC42BPA-211ENST00000466538 C1QTNF2Q9BXJ5 285 aa7.93□□□□□ -1.14
CDC42BPA-211ENST00000466538 PATL2C9JE40 543 aaKnown RBP7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 ATP5J2-PTCD1G3V325 749 aa7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 PPEF1O14829 653 aaPredicted RBP7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 WNT7BP56706 349 aa7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 CDCA8Q53HL2 280 aa7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 SEPT12Q8IYM1 358 aa7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 PLPP7Q8NBV4 271 aa7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 CARD14Q9BXL6 1004 aa7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 MKRN1Q9UHC7 482 aaKnown RBP7.92□□□□□ -1.14
CDC42BPA-211ENST00000466538 NBPF20Q3BBV1 942 aa7.91□□□□□ -1.14
CDC42BPA-211ENST00000466538 LINC01559Q495D7 138 aa7.91□□□□□ -1.14
CDC42BPA-211ENST00000466538 C4orf48Q5BLP8 95 aa7.91□□□□□ -1.14
CDC42BPA-211ENST00000466538 SLC10A4Q96EP9 437 aa7.91□□□□□ -1.14
CDC42BPA-211ENST00000466538 PODXL2Q9NZ53 605 aa7.91□□□□□ -1.14
CDC42BPA-211ENST00000466538 FAM196BA6NMK8 535 aa7.9□□□□□ -1.14
CDC42BPA-211ENST00000466538 CD2BP2O95400 341 aaKnown RBP7.9□□□□□ -1.14
CDC42BPA-211ENST00000466538 BRD1O95696 1058 aa7.9□□□□□ -1.14
CDC42BPA-211ENST00000466538 VARSP26640 1264 aaKnown RBP7.9□□□□□ -1.14
CDC42BPA-211ENST00000466538 EML3Q32P44 896 aa7.9□□□□□ -1.14
CDC42BPA-211ENST00000466538 ESPNB1AK53 854 aa7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 GIGYF1O75420 1035 aaPredicted RBP7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 TRIM32Q13049 653 aa7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 NCOA4Q13772 614 aa7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 PPP1R18Q6NYC8 613 aa7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 LARP1Q6PKG0 1096 aaKnown RBP7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 TRAF7Q6Q0C0 670 aa7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 TRIM50Q86XT4 487 aa7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 SIRT1Q96EB6 747 aa7.89□□□□□ -1.15
CDC42BPA-211ENST00000466538 IFFO2Q5TF58 517 aa7.88□□□□□ -1.15
CDC42BPA-211ENST00000466538 AEBP1Q8IUX7 1158 aa7.88□□□□□ -1.15
CDC42BPA-211ENST00000466538 DEPDC4Q8N2C3 294 aa7.88□□□□□ -1.15
CDC42BPA-211ENST00000466538 TRIM52Q96A61 297 aa7.88□□□□□ -1.15
CDC42BPA-211ENST00000466538 NOD1Q9Y239 953 aa7.88□□□□□ -1.15
CDC42BPA-211ENST00000466538 RASA1P20936 1047 aa7.87□□□□□ -1.15
CDC42BPA-211ENST00000466538 ATP1A2P50993 1020 aa7.87□□□□□ -1.15
CDC42BPA-211ENST00000466538 CDCA7Q9BWT1 371 aaPredicted RBP7.87□□□□□ -1.15
CDC42BPA-211ENST00000466538 DOLKQ9UPQ8 538 aa7.87□□□□□ -1.15
CDC42BPA-211ENST00000466538 MAP4K5Q9Y4K4 846 aa7.87□□□□□ -1.15
CDC42BPA-211ENST00000466538 TMEM88BA6NKF7 163 aa7.86□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP4Q13107 963 aa7.86□□□□□ -1.15
CDC42BPA-211ENST00000466538 PTK7Q13308 1070 aa7.86□□□□□ -1.15
CDC42BPA-211ENST00000466538 TSGA10IPQ3SY00 556 aa7.86□□□□□ -1.15
CDC42BPA-211ENST00000466538 PLA2G2CQ5R387 149 aa7.86□□□□□ -1.15
CDC42BPA-211ENST00000466538 MPNDQ8N594 471 aa7.86□□□□□ -1.15
CDC42BPA-211ENST00000466538 CCDC85AQ96PX6 553 aaPredicted RBP7.86□□□□□ -1.15
CDC42BPA-211ENST00000466538 NOVA2Q9UNW9 492 aaKnown RBP7.86□□□□□ -1.15
CDC42BPA-211ENST00000466538 SKOR1P84550 965 aa7.85□□□□□ -1.15
CDC42BPA-211ENST00000466538 KCNA1Q09470 495 aa7.85□□□□□ -1.15
CDC42BPA-211ENST00000466538 B4GALNT3Q6L9W6 998 aa7.85□□□□□ -1.15
CDC42BPA-211ENST00000466538 LARGE2Q8N3Y3 721 aa7.85□□□□□ -1.15
CDC42BPA-211ENST00000466538 KCTD15Q96SI1 283 aaPredicted RBP7.85□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L15C9J2P7 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L10C9JJH3 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L13C9JLJ4 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L12C9JPN9 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L11C9JVI0 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L21D6R901 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L18D6R9N7 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L22D6RA61 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L17D6RBQ6 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L19D6RCP7 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L20D6RJB6 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 USP17L24Q0WX57 530 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 CRTC2Q53ET0 693 aaPredicted RBP7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 OGFOD1Q8N543 542 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 FAM200AQ8TCP9 573 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 CDK15Q96Q40 435 aa7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 DNAAF2Q9NVR5 837 aaKnown RBP7.84□□□□□ -1.15
CDC42BPA-211ENST00000466538 RC3H1Q5TC82 1133 aaKnown RBP7.83□□□□□ -1.16
CDC42BPA-211ENST00000466538 VASH1Q7L8A9 365 aaPredicted RBP7.83□□□□□ -1.16
CDC42BPA-211ENST00000466538 ANKMY2Q8IV38 441 aa7.83□□□□□ -1.16
CDC42BPA-211ENST00000466538 ZBTB7BO15156 539 aaPredicted RBP7.82□□□□□ -1.16
CDC42BPA-211ENST00000466538 OXLD1Q5BKU9 147 aa7.82□□□□□ -1.16
CDC42BPA-211ENST00000466538 TMEM164Q5U3C3 297 aa7.82□□□□□ -1.16
CDC42BPA-211ENST00000466538 EHBP1Q8NDI1 1231 aa7.82□□□□□ -1.16
CDC42BPA-211ENST00000466538 ZMIZ1Q9ULJ6 1067 aa7.82□□□□□ -1.16
CDC42BPA-211ENST00000466538 PCDHB11Q9Y5F2 797 aa7.82□□□□□ -1.16
CDC42BPA-211ENST00000466538 CLDN10P78369 228 aa7.81□□□□□ -1.16
CDC42BPA-211ENST00000466538 DHX9Q08211 1270 aaKnown RBP7.81□□□□□ -1.16
CDC42BPA-211ENST00000466538 SIX5Q8N196 739 aa7.81□□□□□ -1.16
CDC42BPA-211ENST00000466538 RBM19Q9Y4C8 960 aaKnown RBP7.81□□□□□ -1.16
CDC42BPA-211ENST00000466538 GTF2IP78347 998 aa7.8□□□□□ -1.16
CDC42BPA-211ENST00000466538 MMRN1Q13201 1228 aa7.8□□□□□ -1.16
CDC42BPA-211ENST00000466538 SWI5Q1ZZU3 235 aa7.8□□□□□ -1.16
CDC42BPA-211ENST00000466538 LIAT1Q6ZQX7 453 aa7.8□□□□□ -1.16
CDC42BPA-211ENST00000466538 STK32AQ8WU08 396 aa7.8□□□□□ -1.16
CDC42BPA-211ENST00000466538 CLP1Q92989 425 aaKnown RBP7.8□□□□□ -1.16
CDC42BPA-211ENST00000466538 PCDHGA11Q9Y5H2 935 aa7.8□□□□□ -1.16
CDC42BPA-211ENST00000466538 SIAH2O43255 324 aa7.79□□□□□ -1.16
CDC42BPA-211ENST00000466538 MYCP01106 439 aaPredicted RBP7.79□□□□□ -1.16
CDC42BPA-211ENST00000466538 SLC19A1P41440 591 aa7.79□□□□□ -1.16
CDC42BPA-211ENST00000466538 DPYDQ12882 1025 aa7.79□□□□□ -1.16
CDC42BPA-211ENST00000466538 INTS6LQ5JSJ4 861 aaKnown RBP7.79□□□□□ -1.16
CDC42BPA-211ENST00000466538 ESF1Q9H501 851 aaKnown RBP7.79□□□□□ -1.16
CDC42BPA-211ENST00000466538 CCDC9Q9Y3X0 531 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms