RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TXNRD1Q16881 649 aa17.17■□□□□ 0.34
SQSTM1-206ENST00000466342 MAP3K5Q99683 1374 aa17.16■□□□□ 0.34
SQSTM1-206ENST00000466342 ABTB2Q8N961 1025 aa17.16■□□□□ 0.34
SQSTM1-206ENST00000466342 COL5A2P05997 1499 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-206ENST00000466342 SIN3AQ96ST3 1273 aa17.14■□□□□ 0.33
SQSTM1-206ENST00000466342 BCL9O00512 1426 aa17.13■□□□□ 0.33
SQSTM1-206ENST00000466342 WNK3Q9BYP7 1800 aa17.13■□□□□ 0.33
SQSTM1-206ENST00000466342 GCP02774 474 aa17.13■□□□□ 0.33
SQSTM1-206ENST00000466342 USP19O94966 1318 aa17.13■□□□□ 0.33
SQSTM1-206ENST00000466342 ACEP12821 1306 aa17.13■□□□□ 0.33
SQSTM1-206ENST00000466342 POLR3AO14802 1390 aaPredicted RBP17.13■□□□□ 0.33
SQSTM1-206ENST00000466342 SHANK3Q9BYB0 1731 aa17.13■□□□□ 0.33
SQSTM1-206ENST00000466342 NLRP13Q86W25 1043 aa17.12■□□□□ 0.33
SQSTM1-206ENST00000466342 MARCH10Q8NA82 808 aaPredicted RBP17.12■□□□□ 0.33
SQSTM1-206ENST00000466342 NEUROD1Q13562 356 aa17.1■□□□□ 0.33
SQSTM1-206ENST00000466342 AATKQ6ZMQ8 1374 aa17.1■□□□□ 0.33
SQSTM1-206ENST00000466342 GOLGB1Q14789 3259 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-206ENST00000466342 TOM1L2Q6ZVM7 507 aa17.09■□□□□ 0.33
SQSTM1-206ENST00000466342 TOPAZ1Q8N9V7 1692 aa17.09■□□□□ 0.33
SQSTM1-206ENST00000466342 CLSPNQ9HAW4 1339 aa17.08■□□□□ 0.32
SQSTM1-206ENST00000466342 PLEKHG3A1L390 1219 aa17.08■□□□□ 0.32
SQSTM1-206ENST00000466342 CDCA7Q9BWT1 371 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-206ENST00000466342 CDK19Q9BWU1 502 aa17.08■□□□□ 0.32
SQSTM1-206ENST00000466342 CCDC61Q9Y6R9 512 aa17.08■□□□□ 0.32
SQSTM1-206ENST00000466342 ARHGEF28Q8N1W1 1705 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-206ENST00000466342 KIAA1210Q9ULL0 1709 aa17.07■□□□□ 0.32
SQSTM1-206ENST00000466342 PELP1Q8IZL8 1130 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-206ENST00000466342 COL18A1P39060 1754 aa17.05■□□□□ 0.32
SQSTM1-206ENST00000466342 KAT6BQ8WYB5 2073 aa17.05■□□□□ 0.32
SQSTM1-206ENST00000466342 ZBTB7CA1YPR0 619 aa17.05■□□□□ 0.32
SQSTM1-206ENST00000466342 L3MBTL2Q969R5 705 aa17.05■□□□□ 0.32
SQSTM1-206ENST00000466342 RGPD5Q99666 1765 aa17.05■□□□□ 0.32
SQSTM1-206ENST00000466342 COL24A1Q17RW2 1714 aa17.04■□□□□ 0.32
SQSTM1-206ENST00000466342 PAPPAQ13219 1627 aa17.03■□□□□ 0.32
SQSTM1-206ENST00000466342 WDR17Q8IZU2 1322 aa17.03■□□□□ 0.32
SQSTM1-206ENST00000466342 EXOC5O00471 708 aa17.03■□□□□ 0.32
SQSTM1-206ENST00000466342 KLHL34Q8N239 644 aa17.03■□□□□ 0.32
SQSTM1-206ENST00000466342 CCER1Q8TC90 406 aaPredicted RBP17.03■□□□□ 0.32
SQSTM1-206ENST00000466342 TONSLQ96HA7 1378 aa17.02■□□□□ 0.32
SQSTM1-206ENST00000466342 NHSQ6T4R5 1651 aa17.02■□□□□ 0.32
SQSTM1-206ENST00000466342 HSPA6P17066 643 aa17.02■□□□□ 0.32
SQSTM1-206ENST00000466342 SLC16A10Q8TF71 515 aa17.02■□□□□ 0.32
SQSTM1-206ENST00000466342 QSER1Q2KHR3 1735 aa17.01■□□□□ 0.31
SQSTM1-206ENST00000466342 TRPM1Q7Z4N2 1603 aa17.01■□□□□ 0.31
SQSTM1-206ENST00000466342 GRIN3BO60391 1043 aa17.01■□□□□ 0.31
SQSTM1-206ENST00000466342 AXIN2Q9Y2T1 843 aa17.01■□□□□ 0.31
SQSTM1-206ENST00000466342 POLD1P28340 1107 aa17■□□□□ 0.31
SQSTM1-206ENST00000466342 BRD4O60885 1362 aaPredicted RBP17■□□□□ 0.31
SQSTM1-206ENST00000466342 NLRP6P59044 892 aa16.99■□□□□ 0.31
SQSTM1-206ENST00000466342 ZNF827Q17R98 1081 aa16.99■□□□□ 0.31
SQSTM1-206ENST00000466342 CARD10Q9BWT7 1032 aa16.99■□□□□ 0.31
SQSTM1-206ENST00000466342 BTAF1O14981 1849 aa16.98■□□□□ 0.31
SQSTM1-206ENST00000466342 SLIT3O75094 1523 aa16.98■□□□□ 0.31
SQSTM1-206ENST00000466342 NBPF1Q3BBV0 1214 aa16.97■□□□□ 0.31
SQSTM1-206ENST00000466342 NLGN2Q8NFZ4 835 aa16.97■□□□□ 0.31
SQSTM1-206ENST00000466342 ATP10DQ9P241 1426 aa16.96■□□□□ 0.31
SQSTM1-206ENST00000466342 YBX3P16989 372 aaKnown RBP eCLIP16.96■□□□□ 0.31
SQSTM1-206ENST00000466342 ACSBG1Q96GR2 724 aa16.96■□□□□ 0.31
SQSTM1-206ENST00000466342 GPBP1L1Q9HC44 474 aaPredicted RBP16.96■□□□□ 0.31
SQSTM1-206ENST00000466342 LRRC4BQ9NT99 713 aa16.95■□□□□ 0.3
SQSTM1-206ENST00000466342 AKT1S1Q96B36 256 aa16.94■□□□□ 0.3
SQSTM1-206ENST00000466342 PPIP5K1Q6PFW1 1433 aa16.94■□□□□ 0.3
SQSTM1-206ENST00000466342 TUBGCP6Q96RT7 1819 aa16.93■□□□□ 0.3
SQSTM1-206ENST00000466342 CSB-PGBD3P0DP91 1061 aa16.93■□□□□ 0.3
SQSTM1-206ENST00000466342 USP6P35125 1406 aa16.93■□□□□ 0.3
SQSTM1-206ENST00000466342 ARHGEF25Q86VW2 580 aa16.92■□□□□ 0.3
SQSTM1-206ENST00000466342 TIMELESSQ9UNS1 1208 aa16.92■□□□□ 0.3
SQSTM1-206ENST00000466342 TNS2Q63HR2 1409 aa16.92■□□□□ 0.3
SQSTM1-206ENST00000466342 CCDC7Q96M83 1385 aa16.91■□□□□ 0.3
SQSTM1-206ENST00000466342 CPSF1Q10570 1443 aaKnown RBP16.91■□□□□ 0.3
SQSTM1-206ENST00000466342 PNPLA7Q6ZV29 1317 aa16.91■□□□□ 0.3
SQSTM1-206ENST00000466342 SRPK2P78362 688 aaKnown RBP16.9■□□□□ 0.3
SQSTM1-206ENST00000466342 PIK3C2AO00443 1686 aa16.9■□□□□ 0.3
SQSTM1-206ENST00000466342 CENPJQ9HC77 1338 aaPredicted RBP16.9■□□□□ 0.3
SQSTM1-206ENST00000466342 SLC27A3Q5K4L6 730 aa16.89■□□□□ 0.29
SQSTM1-206ENST00000466342 KCNH5Q8NCM2 988 aa16.89■□□□□ 0.29
SQSTM1-206ENST00000466342 ABCC6O95255 1503 aa16.88■□□□□ 0.29
SQSTM1-206ENST00000466342 TFCP2L1Q9NZI6 479 aa16.88■□□□□ 0.29
SQSTM1-206ENST00000466342 CABP2Q9NPB3 220 aa16.87■□□□□ 0.29
SQSTM1-206ENST00000466342 CABP1Q9NZU7 370 aa16.87■□□□□ 0.29
SQSTM1-206ENST00000466342 ROCK2O75116 1388 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-206ENST00000466342 ZNF526Q8TF50 670 aaPredicted RBP16.86■□□□□ 0.29
SQSTM1-206ENST00000466342 ADCY9O60503 1353 aa16.86■□□□□ 0.29
SQSTM1-206ENST00000466342 QRICH2Q9H0J4 1663 aa16.85■□□□□ 0.29
SQSTM1-206ENST00000466342 IL2RBP14784 551 aa16.83■□□□□ 0.28
SQSTM1-206ENST00000466342 APLP1P51693 650 aa16.83■□□□□ 0.28
SQSTM1-206ENST00000466342 DNAJC5GQ8N7S2 189 aa16.83■□□□□ 0.28
SQSTM1-206ENST00000466342 LY75O60449 1722 aa16.82■□□□□ 0.28
SQSTM1-206ENST00000466342 SOX12O15370 315 aa16.82■□□□□ 0.28
SQSTM1-206ENST00000466342 KIF3CO14782 793 aa16.81■□□□□ 0.28
SQSTM1-206ENST00000466342 CD2APQ9Y5K6 639 aa16.81■□□□□ 0.28
SQSTM1-206ENST00000466342 EVC2Q86UK5 1308 aa16.8■□□□□ 0.28
SQSTM1-206ENST00000466342 KCNQ4P56696 695 aa16.8■□□□□ 0.28
SQSTM1-206ENST00000466342 ZNF692Q9BU19 519 aaPredicted RBP16.8■□□□□ 0.28
SQSTM1-206ENST00000466342 NLRP2Q9NX02 1062 aa16.8■□□□□ 0.28
SQSTM1-206ENST00000466342 TTC21BQ7Z4L5 1316 aa16.79■□□□□ 0.28
SQSTM1-206ENST00000466342 NFAT5O94916 1531 aa16.79■□□□□ 0.28
SQSTM1-206ENST00000466342 MSH5O43196 834 aa16.78■□□□□ 0.28
SQSTM1-206ENST00000466342 COL23A1Q86Y22 540 aaPredicted RBP16.78■□□□□ 0.28
SQSTM1-206ENST00000466342 CARD11Q9BXL7 1154 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms