RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859		A0A0G2JS52	829 aa		12.4	□□□□□ -0.42
RFX3-209	ENST00000451859	FAM83G	A6ND36	823 aa		12.4	□□□□□ -0.42
RFX3-209	ENST00000451859	MYT1	Q01538	1121 aa		12.4	□□□□□ -0.42
RFX3-209	ENST00000451859	NBPF8	Q3BBV2	869 aa		12.4	□□□□□ -0.42
RFX3-209	ENST00000451859	BTG4	Q9NY30	223 aa		12.4	□□□□□ -0.42
RFX3-209	ENST00000451859	PCDH10	Q9P2E7	1040 aa		12.4	□□□□□ -0.42
RFX3-209	ENST00000451859	POLR3A	O14802	1390 aa	Predicted RBP	12.4	□□□□□ -0.42
RFX3-209	ENST00000451859	ATN1	P54259	1190 aa	Predicted RBP	12.38	□□□□□ -0.43
RFX3-209	ENST00000451859	VPS72	Q15906	364 aa		12.38	□□□□□ -0.43
RFX3-209	ENST00000451859	PRDM11	Q9NQV5	511 aa		12.38	□□□□□ -0.43
RFX3-209	ENST00000451859	PIK3C2A	O00443	1686 aa		12.38	□□□□□ -0.43
RFX3-209	ENST00000451859	PLEKHG3	A1L390	1219 aa		12.37	□□□□□ -0.43
RFX3-209	ENST00000451859	ZC3H6	P61129	1189 aa	Known RBP	12.37	□□□□□ -0.43
RFX3-209	ENST00000451859	CHRNA2	Q15822	529 aa		12.37	□□□□□ -0.43
RFX3-209	ENST00000451859	MAMSTR	Q6ZN01	415 aa		12.37	□□□□□ -0.43
RFX3-209	ENST00000451859	ABTB2	Q8N961	1025 aa		12.37	□□□□□ -0.43
RFX3-209	ENST00000451859	KIAA0232	Q92628	1395 aa		12.37	□□□□□ -0.43
RFX3-209	ENST00000451859	RGPD5	Q99666	1765 aa		12.37	□□□□□ -0.43
RFX3-209	ENST00000451859	EVC2	Q86UK5	1308 aa		12.37	□□□□□ -0.43
RFX3-209	ENST00000451859	POTEF	A5A3E0	1075 aa		12.36	□□□□□ -0.43
RFX3-209	ENST00000451859	PROM2	Q8N271	834 aa		12.36	□□□□□ -0.43
RFX3-209	ENST00000451859	CABP1	Q9NZU7	370 aa		12.36	□□□□□ -0.43
RFX3-209	ENST00000451859	MON2	Q7Z3U7	1717 aa		12.36	□□□□□ -0.43
RFX3-209	ENST00000451859	ZBTB7C	A1YPR0	619 aa		12.35	□□□□□ -0.43
RFX3-209	ENST00000451859	SEPT12	Q8IYM1	358 aa		12.35	□□□□□ -0.43
RFX3-209	ENST00000451859	CARD11	Q9BXL7	1154 aa		12.35	□□□□□ -0.43
RFX3-209	ENST00000451859	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.35	□□□□□ -0.43
RFX3-209	ENST00000451859	STRN4	Q9NRL3	753 aa		12.35	□□□□□ -0.43
RFX3-209	ENST00000451859	FAM98C	Q17RN3	349 aa	Known RBP	12.34	□□□□□ -0.43
RFX3-209	ENST00000451859	USP6	P35125	1406 aa		12.34	□□□□□ -0.43
RFX3-209	ENST00000451859	LMO7	Q8WWI1	1683 aa		12.33	□□□□□ -0.44
RFX3-209	ENST00000451859	KIF12	Q96FN5	646 aa		12.33	□□□□□ -0.44
RFX3-209	ENST00000451859	THSD7A	Q9UPZ6	1657 aa		12.32	□□□□□ -0.44
RFX3-209	ENST00000451859	KRT27	Q7Z3Y8	459 aa		12.31	□□□□□ -0.44
RFX3-209	ENST00000451859	NLRP13	Q86W25	1043 aa		12.31	□□□□□ -0.44
RFX3-209	ENST00000451859	USP35	Q9P2H5	1018 aa		12.31	□□□□□ -0.44
RFX3-209	ENST00000451859	TRPC6	Q9Y210	931 aa		12.31	□□□□□ -0.44
RFX3-209	ENST00000451859	CAMTA1	Q9Y6Y1	1673 aa		12.31	□□□□□ -0.44
RFX3-209	ENST00000451859	USP19	O94966	1318 aa		12.31	□□□□□ -0.44
RFX3-209	ENST00000451859	RGPD1	P0DJD0	1748 aa		12.31	□□□□□ -0.44
RFX3-209	ENST00000451859	LTN1	O94822	1766 aa		12.3	□□□□□ -0.44
RFX3-209	ENST00000451859	WNK3	Q9BYP7	1800 aa		12.3	□□□□□ -0.44
RFX3-209	ENST00000451859	NLRP6	P59044	892 aa		12.3	□□□□□ -0.44
RFX3-209	ENST00000451859	SLIT3	O75094	1523 aa		12.3	□□□□□ -0.44
RFX3-209	ENST00000451859	SPATA31A5	Q5VU36	1347 aa		12.3	□□□□□ -0.44
RFX3-209	ENST00000451859	SPATA31A7	Q8IWB4	1347 aa		12.3	□□□□□ -0.44
RFX3-209	ENST00000451859	COL18A1	P39060	1754 aa		12.29	□□□□□ -0.44
RFX3-209	ENST00000451859	SOX12	O15370	315 aa		12.29	□□□□□ -0.44
RFX3-209	ENST00000451859	EVA1C	P58658	441 aa		12.29	□□□□□ -0.44
RFX3-209	ENST00000451859	FAM182B	Q5T319	152 aa		12.29	□□□□□ -0.44
RFX3-209	ENST00000451859	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.29	□□□□□ -0.44
RFX3-209	ENST00000451859	BLM	P54132	1417 aa	Predicted RBP	12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	SSH2	Q76I76	1423 aa		12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	TNS1	Q9HBL0	1735 aa	Known RBP	12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	GC	P02774	474 aa		12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	TMC1	Q8TDI8	760 aa		12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	PCGF6	Q9BYE7	350 aa		12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	BRD4	O60885	1362 aa	Predicted RBP	12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	KTN1	Q86UP2	1357 aa	Known RBP	12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	SBNO2	Q9Y2G9	1366 aa		12.28	□□□□□ -0.44
RFX3-209	ENST00000451859	ONECUT3	O60422	494 aa	Predicted RBP	12.27	□□□□□ -0.45
RFX3-209	ENST00000451859	SF3B2	Q13435	895 aa	Known RBP	12.27	□□□□□ -0.45
RFX3-209	ENST00000451859	FAM163A	Q96GL9	167 aa	Predicted RBP	12.27	□□□□□ -0.45
RFX3-209	ENST00000451859	SCUBE2	Q9NQ36	999 aa		12.27	□□□□□ -0.45
RFX3-209	ENST00000451859	SPATA31A1	Q5TZJ5	1347 aa		12.27	□□□□□ -0.45
RFX3-209	ENST00000451859	TTC21B	Q7Z4L5	1316 aa		12.27	□□□□□ -0.45
RFX3-209	ENST00000451859	CPD	O75976	1380 aa		12.27	□□□□□ -0.45
RFX3-209	ENST00000451859	COL5A2	P05997	1499 aa	Predicted RBP	12.27	□□□□□ -0.45
RFX3-209	ENST00000451859	LARP1	Q6PKG0	1096 aa	Known RBP	12.26	□□□□□ -0.45
RFX3-209	ENST00000451859	DEFB132	Q7Z7B7	95 aa		12.26	□□□□□ -0.45
RFX3-209	ENST00000451859	CCDC125	Q86Z20	511 aa		12.26	□□□□□ -0.45
RFX3-209	ENST00000451859	CPSF1	Q10570	1443 aa	Known RBP	12.26	□□□□□ -0.45
RFX3-209	ENST00000451859	PARP4	Q9UKK3	1724 aa	Known RBP	12.25	□□□□□ -0.45
RFX3-209	ENST00000451859	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.25	□□□□□ -0.45	8e-7	■■■□□ 18.5
RFX3-209	ENST00000451859	USP54	Q70EL1	1684 aa		12.25	□□□□□ -0.45
RFX3-209	ENST00000451859	SBF2	Q86WG5	1849 aa		12.24	□□□□□ -0.45
RFX3-209	ENST00000451859	KAT6B	Q8WYB5	2073 aa		12.24	□□□□□ -0.45
RFX3-209	ENST00000451859	CD163L1	Q9NR16	1453 aa		12.24	□□□□□ -0.45
RFX3-209	ENST00000451859	LRRC37A3	O60309	1634 aa		12.23	□□□□□ -0.45
RFX3-209	ENST00000451859	NFAT5	O94916	1531 aa		12.23	□□□□□ -0.45
RFX3-209	ENST00000451859	TTC21A	Q8NDW8	1320 aa		12.23	□□□□□ -0.45
RFX3-209	ENST00000451859	ST20-MTHFS	A0A0A6YYL1	179 aa		12.23	□□□□□ -0.45
RFX3-209	ENST00000451859	SLC12A5	Q9H2X9	1139 aa		12.23	□□□□□ -0.45
RFX3-209	ENST00000451859	MAP3K13	O43283	966 aa		12.22	□□□□□ -0.45
RFX3-209	ENST00000451859	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.22	□□□□□ -0.45
RFX3-209	ENST00000451859	NME9	Q86XW9	330 aa		12.22	□□□□□ -0.45
RFX3-209	ENST00000451859	KIF20B	Q96Q89	1820 aa		12.22	□□□□□ -0.45
RFX3-209	ENST00000451859	CRB1	P82279	1406 aa		12.21	□□□□□ -0.45
RFX3-209	ENST00000451859		A0A1W2PP64	1363 aa		12.21	□□□□□ -0.45
RFX3-209	ENST00000451859	AATK	Q6ZMQ8	1374 aa		12.21	□□□□□ -0.45
RFX3-209	ENST00000451859	USP47	Q96K76	1375 aa		12.21	□□□□□ -0.45
RFX3-209	ENST00000451859	TIE1	P35590	1138 aa		12.21	□□□□□ -0.45
RFX3-209	ENST00000451859	TCP11L2	Q8N4U5	519 aa		12.21	□□□□□ -0.45
RFX3-209	ENST00000451859	BAG6	P46379	1132 aa		12.2	□□□□□ -0.46
RFX3-209	ENST00000451859	TOM1L2	Q6ZVM7	507 aa		12.2	□□□□□ -0.46
RFX3-209	ENST00000451859	KCNH5	Q8NCM2	988 aa		12.2	□□□□□ -0.46
RFX3-209	ENST00000451859	RGPD2	P0DJD1	1756 aa		12.2	□□□□□ -0.46
RFX3-209	ENST00000451859	EDC4	Q6P2E9	1401 aa	Known RBP	12.2	□□□□□ -0.46
RFX3-209	ENST00000451859	SRCAP	Q6ZRS2	3230 aa		12.19	□□□□□ -0.46
RFX3-209	ENST00000451859	TRIM37	O94972	964 aa		12.19	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms