RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 RIC3Q7Z5B4 369 aa12.16□□□□□ -0.46
CMSS1-201ENST00000421999 PPP1R1BQ9UD71 204 aaPredicted RBP12.15□□□□□ -0.46
CMSS1-201ENST00000421999 NPHP4O75161 1426 aaPredicted RBP12.15□□□□□ -0.46
CMSS1-201ENST00000421999 GPATCH3Q96I76 525 aa12.15□□□□□ -0.46
CMSS1-201ENST00000421999 CABP4P57796 275 aa12.15□□□□□ -0.46
CMSS1-201ENST00000421999 SPG7Q9UQ90 795 aa12.15□□□□□ -0.47
CMSS1-201ENST00000421999 AGLP35573 1532 aa12.14□□□□□ -0.47
CMSS1-201ENST00000421999 SLFN5Q08AF3 891 aa12.14□□□□□ -0.47
CMSS1-201ENST00000421999 AEBP1Q8IUX7 1158 aa12.14□□□□□ -0.47
CMSS1-201ENST00000421999 GCP02774 474 aa12.14□□□□□ -0.47
CMSS1-201ENST00000421999 PLEKHG3A1L390 1219 aa12.14□□□□□ -0.47
CMSS1-201ENST00000421999 NCLP19338 710 aaKnown RBP12.14□□□□□ -0.47
CMSS1-201ENST00000421999 CLTCQ00610 1675 aaKnown RBP12.14□□□□□ -0.47
CMSS1-201ENST00000421999 MCCP23508 829 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 NBR1Q14596 966 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 ANKRD24Q8TF21 1146 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 API5Q9BZZ5 524 aaKnown RBP12.13□□□□□ -0.47
CMSS1-201ENST00000421999 KIF16BQ96L93 1317 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 MAP3K4Q9Y6R4 1608 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 GNAT3A8MTJ3 354 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 EIF4A2Q14240 407 aaKnown RBP12.13□□□□□ -0.47
CMSS1-201ENST00000421999 MAP3K19Q56UN5 1328 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 ARHGEF40Q8TER5 1519 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 ZFYVE9O95405 1425 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 DDRGK1Q96HY6 314 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 CAMSAP1Q5T5Y3 1602 aa12.13□□□□□ -0.47
CMSS1-201ENST00000421999 TMEM94Q12767 1356 aa12.12□□□□□ -0.47
CMSS1-201ENST00000421999 FAM83GA6ND36 823 aa12.12□□□□□ -0.47
CMSS1-201ENST00000421999 LMTK3Q96Q04 1460 aa12.12□□□□□ -0.47
CMSS1-201ENST00000421999 SLAIN2Q9P270 581 aa12.12□□□□□ -0.47
CMSS1-201ENST00000421999 MPRIPQ6WCQ1 1025 aa12.11□□□□□ -0.47
CMSS1-201ENST00000421999 LRRC59Q96AG4 307 aaKnown RBP12.11□□□□□ -0.47
CMSS1-201ENST00000421999 DDX19BQ9UMR2 479 aa12.11□□□□□ -0.47
CMSS1-201ENST00000421999 EDC4Q6P2E9 1401 aaKnown RBP12.11□□□□□ -0.47
CMSS1-201ENST00000421999 POLR3AO14802 1390 aaPredicted RBP12.11□□□□□ -0.47
CMSS1-201ENST00000421999 HDGFL1Q5TGJ6 251 aa12.1□□□□□ -0.47
CMSS1-201ENST00000421999 TOMM22Q9NS69 142 aa12.1□□□□□ -0.47
CMSS1-201ENST00000421999 PRR36Q9H6K5 1346 aa12.1□□□□□ -0.47
CMSS1-201ENST00000421999 FRMPD1Q5SYB0 1578 aa12.1□□□□□ -0.47
CMSS1-201ENST00000421999 ADGRB3O60242 1522 aa12.1□□□□□ -0.47
CMSS1-201ENST00000421999 SLC4A2P04920 1241 aa12.1□□□□□ -0.47
CMSS1-201ENST00000421999 HSP90AB1P08238 724 aaKnown RBP12.1□□□□□ -0.47
CMSS1-201ENST00000421999 GOLGA6L22H0YM25 854 aa12.1□□□□□ -0.47
CMSS1-201ENST00000421999 CCDC30Q5VVM6 783 aa12.09□□□□□ -0.47
CMSS1-201ENST00000421999 ZNF428Q96B54 188 aa12.09□□□□□ -0.47
CMSS1-201ENST00000421999 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.09□□□□□ -0.47
CMSS1-201ENST00000421999 NPC1L1Q9UHC9 1359 aa12.09□□□□□ -0.47
CMSS1-201ENST00000421999 ZNF335Q9H4Z2 1342 aaPredicted RBP12.09□□□□□ -0.47
CMSS1-201ENST00000421999 BTBD11A6QL63 1104 aa12.09□□□□□ -0.47
CMSS1-201ENST00000421999 VPS37DQ86XT2 251 aa12.09□□□□□ -0.47
CMSS1-201ENST00000421999 NOB1Q9ULX3 412 aaKnown RBP12.09□□□□□ -0.47
CMSS1-201ENST00000421999 ZMYM4Q5VZL5 1548 aa12.09□□□□□ -0.47
CMSS1-201ENST00000421999 PTCD1O75127 700 aaKnown RBP12.09□□□□□ -0.47
CMSS1-201ENST00000421999 ANKRD45Q5TZF3 282 aa12.08□□□□□ -0.48
CMSS1-201ENST00000421999 FLT4P35916 1363 aa12.08□□□□□ -0.48
CMSS1-201ENST00000421999 AMOTQ4VCS5 1084 aa12.08□□□□□ -0.48
CMSS1-201ENST00000421999 FBXW7Q969H0 707 aa12.08□□□□□ -0.48
CMSS1-201ENST00000421999 PHACTR3Q96KR7 559 aa12.08□□□□□ -0.48
CMSS1-201ENST00000421999 EYA1Q99502 592 aa12.08□□□□□ -0.48
CMSS1-201ENST00000421999 ZRSR1Q15695 479 aaKnown RBP12.07□□□□□ -0.48
CMSS1-201ENST00000421999 CFAP44Q96MT7 982 aa12.07□□□□□ -0.48
CMSS1-201ENST00000421999 HOXC9P31274 260 aa12.07□□□□□ -0.48
CMSS1-201ENST00000421999 DUSP27Q5VZP5 1158 aa12.07□□□□□ -0.48
CMSS1-201ENST00000421999 ALKQ9UM73 1620 aa12.06□□□□□ -0.48
CMSS1-201ENST00000421999 FANCIQ9NVI1 1328 aa12.06□□□□□ -0.48
CMSS1-201ENST00000421999 TRPM1Q7Z4N2 1603 aa12.06□□□□□ -0.48
CMSS1-201ENST00000421999 TAF7Q15545 349 aaPredicted RBP12.06□□□□□ -0.48
CMSS1-201ENST00000421999 RILPL2Q969X0 211 aa12.06□□□□□ -0.48
CMSS1-201ENST00000421999 FAM135BQ49AJ0 1406 aa12.06□□□□□ -0.48
CMSS1-201ENST00000421999 G3BP1Q13283 466 aaKnown RBP eCLIP12.05□□□□□ -0.48
CMSS1-201ENST00000421999 CENPQQ7L2Z9 268 aaPredicted RBP12.05□□□□□ -0.48
CMSS1-201ENST00000421999 KIF6Q6ZMV9 814 aa12.05□□□□□ -0.48
CMSS1-201ENST00000421999 IP6K1Q92551 441 aa12.05□□□□□ -0.48
CMSS1-201ENST00000421999 IFT57Q9NWB7 429 aa12.05□□□□□ -0.48
CMSS1-201ENST00000421999 KDM5AP29375 1690 aaKnown RBP12.05□□□□□ -0.48
CMSS1-201ENST00000421999 MYL6BP14649 208 aa12.05□□□□□ -0.48
CMSS1-201ENST00000421999 C8orf37Q96NL8 207 aa12.05□□□□□ -0.48
CMSS1-201ENST00000421999 MADDQ8WXG6 1647 aa12.04□□□□□ -0.48
CMSS1-201ENST00000421999 EXOC5O00471 708 aa12.04□□□□□ -0.48
CMSS1-201ENST00000421999 SSH1Q8WYL5 1049 aa12.04□□□□□ -0.48
CMSS1-201ENST00000421999 PIK3R4Q99570 1358 aa12.04□□□□□ -0.48
CMSS1-201ENST00000421999 DCAF8L1A6NGE4 600 aa12.04□□□□□ -0.48
CMSS1-201ENST00000421999 CT47B1P0C2W7 299 aaPredicted RBP12.04□□□□□ -0.48
CMSS1-201ENST00000421999 ATF7IPQ6VMQ6 1270 aa12.04□□□□□ -0.48
CMSS1-201ENST00000421999 SPRYD3Q8NCJ5 442 aa12.04□□□□□ -0.48
CMSS1-201ENST00000421999 IL13P35225 146 aa12.03□□□□□ -0.48
CMSS1-201ENST00000421999 MFAP1P55081 439 aaKnown RBP12.03□□□□□ -0.48
CMSS1-201ENST00000421999 PDE3AQ14432 1141 aa12.03□□□□□ -0.48
CMSS1-201ENST00000421999 MTHFSDQ2M296 383 aaKnown RBP12.03□□□□□ -0.48
CMSS1-201ENST00000421999 HSCBQ8IWL3 235 aa12.03□□□□□ -0.48
CMSS1-201ENST00000421999 SYNMO15061 1565 aa12.03□□□□□ -0.48
CMSS1-201ENST00000421999 RICTORQ6R327 1708 aa12.03□□□□□ -0.48
CMSS1-201ENST00000421999 UBTFL1P0CB47 393 aaPredicted RBP12.03□□□□□ -0.48
CMSS1-201ENST00000421999 RARSP54136 660 aaKnown RBP12.03□□□□□ -0.48
CMSS1-201ENST00000421999 IFIT2P09913 472 aaKnown RBP12.02□□□□□ -0.48
CMSS1-201ENST00000421999 NEUROD6Q96NK8 337 aa12.02□□□□□ -0.48
CMSS1-201ENST00000421999 C1orf115Q9H7X2 142 aa12.02□□□□□ -0.48
CMSS1-201ENST00000421999 KAT6BQ8WYB5 2073 aa12.02□□□□□ -0.48
CMSS1-201ENST00000421999 MBIPQ9NS73 344 aa12.02□□□□□ -0.48
CMSS1-201ENST00000421999 IFNL2Q8IZJ0 200 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 296.3 ms