RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PRR20EP86478 221 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 PRR20CP86479 221 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 PRR20DP86480 221 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 PRR20BP86481 221 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 PRR20AP86496 221 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 GLMNQ92990 594 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 CCDC97Q96F63 343 aaPredicted RBP8.64□□□□□ -1.03
VPS54-204ENST00000416400 CDK15Q96Q40 435 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 KCTD15Q96SI1 283 aaPredicted RBP8.64□□□□□ -1.03
VPS54-204ENST00000416400 MAP4K5Q9Y4K4 846 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 TLL2Q9Y6L7 1015 aa8.64□□□□□ -1.03
VPS54-204ENST00000416400 SIAH2O43255 324 aa8.63□□□□□ -1.03
VPS54-204ENST00000416400 ADH1CP00326 375 aa8.62□□□□□ -1.03
VPS54-204ENST00000416400 RAB15P59190 212 aa8.62□□□□□ -1.03
VPS54-204ENST00000416400 NR5A1Q13285 461 aa8.62□□□□□ -1.03
VPS54-204ENST00000416400 CCDC125Q86Z20 511 aa8.62□□□□□ -1.03
VPS54-204ENST00000416400 ALG2Q9H553 416 aa8.62□□□□□ -1.03
VPS54-204ENST00000416400 CEP126Q9P2H0 1117 aa8.62□□□□□ -1.03
VPS54-204ENST00000416400 SERPINA10Q9UK55 444 aa8.62□□□□□ -1.03
VPS54-204ENST00000416400 FSHRP23945 695 aa8.61□□□□□ -1.03
VPS54-204ENST00000416400 DHX9Q08211 1270 aaKnown RBP8.61□□□□□ -1.03
VPS54-204ENST00000416400 RNF135Q8IUD6 432 aa8.61□□□□□ -1.03
VPS54-204ENST00000416400 SEPT12Q8IYM1 358 aa8.61□□□□□ -1.03
VPS54-204ENST00000416400 ESF1Q9H501 851 aaKnown RBP8.61□□□□□ -1.03
VPS54-204ENST00000416400 GFRA3O60609 400 aa8.6□□□□□ -1.03
VPS54-204ENST00000416400 GIGYF1O75420 1035 aaPredicted RBP8.59□□□□□ -1.03
VPS54-204ENST00000416400 LAPTM4AQ15012 233 aa8.59□□□□□ -1.03
VPS54-204ENST00000416400 TOR4AQ9NXH8 423 aa8.59□□□□□ -1.03
VPS54-204ENST00000416400 TRIM67Q6ZTA4 783 aa8.58□□□□□ -1.04
VPS54-204ENST00000416400 CCDC116Q8IYX3 515 aa8.58□□□□□ -1.04
VPS54-204ENST00000416400 FAM187AA6NFU0 413 aa8.57□□□□□ -1.04
VPS54-204ENST00000416400 ESPNB1AK53 854 aa8.57□□□□□ -1.04
VPS54-204ENST00000416400 J3QL48 77 aa8.57□□□□□ -1.04
VPS54-204ENST00000416400 GRM5P41594 1212 aa8.57□□□□□ -1.04
VPS54-204ENST00000416400 NNTQ13423 1086 aa8.57□□□□□ -1.04
VPS54-204ENST00000416400 INTS6LQ5JSJ4 861 aaKnown RBP8.57□□□□□ -1.04
VPS54-204ENST00000416400 IRX2Q9BZI1 471 aaPredicted RBP8.57□□□□□ -1.04
VPS54-204ENST00000416400 PGPEP1Q9NXJ5 209 aa8.57□□□□□ -1.04
VPS54-204ENST00000416400 NRG2O14511 850 aaPredicted RBP8.56□□□□□ -1.04
VPS54-204ENST00000416400 SKIP12755 728 aa8.56□□□□□ -1.04
VPS54-204ENST00000416400 PKDCCQ504Y2 493 aa8.56□□□□□ -1.04
VPS54-204ENST00000416400 ADAMTS19Q8TE59 1207 aa8.56□□□□□ -1.04
VPS54-204ENST00000416400 DOLKQ9UPQ8 538 aa8.56□□□□□ -1.04
VPS54-204ENST00000416400 PCDHB11Q9Y5F2 797 aa8.56□□□□□ -1.04
VPS54-204ENST00000416400 EMILIN1Q9Y6C2 1016 aa8.56□□□□□ -1.04
VPS54-204ENST00000416400 SMPD1P17405 629 aa8.55□□□□□ -1.04
VPS54-204ENST00000416400 MAP7D1Q3KQU3 841 aa8.55□□□□□ -1.04
VPS54-204ENST00000416400 NFATC2IPQ8NCF5 419 aa8.55□□□□□ -1.04
VPS54-204ENST00000416400 ERVH48-1M5A8F1 160 aa8.54□□□□□ -1.04
VPS54-204ENST00000416400 MYCP01106 439 aaPredicted RBP8.54□□□□□ -1.04
VPS54-204ENST00000416400 PLPP7Q8NBV4 271 aa8.54□□□□□ -1.04
VPS54-204ENST00000416400 SIRT1Q96EB6 747 aa8.54□□□□□ -1.04
VPS54-204ENST00000416400 DGAT1O75907 488 aa8.53□□□□□ -1.04
VPS54-204ENST00000416400 PPP1R26Q5T8A7 1209 aaPredicted RBP8.53□□□□□ -1.04
VPS54-204ENST00000416400 PIK3CDO00329 1044 aa8.52□□□□□ -1.05
VPS54-204ENST00000416400 ATP9BO43861 1147 aa8.52□□□□□ -1.05
VPS54-204ENST00000416400 LZTS3O60299 673 aaPredicted RBP8.52□□□□□ -1.05
VPS54-204ENST00000416400 WDR4P57081 412 aaKnown RBP8.52□□□□□ -1.05
VPS54-204ENST00000416400 MYT1Q01538 1121 aa8.52□□□□□ -1.05
VPS54-204ENST00000416400 USP4Q13107 963 aa8.52□□□□□ -1.05
VPS54-204ENST00000416400 EML3Q32P44 896 aa8.52□□□□□ -1.05
VPS54-204ENST00000416400 OXLD1Q5BKU9 147 aa8.52□□□□□ -1.05
VPS54-204ENST00000416400 PHTF2Q8N3S3 785 aa8.52□□□□□ -1.05
VPS54-204ENST00000416400 PPP1R12CQ9BZL4 782 aa8.52□□□□□ -1.05
VPS54-204ENST00000416400 TFIP11Q9UBB9 837 aaKnown RBP8.52□□□□□ -1.05
VPS54-204ENST00000416400 PALM3A6NDB9 673 aaPredicted RBP8.51□□□□□ -1.05
VPS54-204ENST00000416400 NR3C2P08235 984 aa8.51□□□□□ -1.05
VPS54-204ENST00000416400 HPS1Q92902 700 aa8.51□□□□□ -1.05
VPS54-204ENST00000416400 USP17L5A8MUK1 530 aa8.5□□□□□ -1.05
VPS54-204ENST00000416400 ZIC2O95409 532 aaPredicted RBP8.5□□□□□ -1.05
VPS54-204ENST00000416400 PDIA4P13667 645 aaKnown RBP8.5□□□□□ -1.05
VPS54-204ENST00000416400 LMOD1P29536 600 aaPredicted RBP8.5□□□□□ -1.05
VPS54-204ENST00000416400 TBC1D9Q6ZT07 1266 aa8.5□□□□□ -1.05
VPS54-204ENST00000416400 CCDC85AQ96PX6 553 aaPredicted RBP8.5□□□□□ -1.05
VPS54-204ENST00000416400 TMPRSS4Q9NRS4 437 aa8.5□□□□□ -1.05
VPS54-204ENST00000416400 CC2D2BQ6DHV5 1058 aa8.49□□□□□ -1.05
VPS54-204ENST00000416400 UCN2Q96RP3 112 aa8.49□□□□□ -1.05
VPS54-204ENST00000416400 CYLDQ9NQC7 956 aa8.49□□□□□ -1.05
VPS54-204ENST00000416400 CAPN5O15484 640 aaPredicted RBP8.48□□□□□ -1.05
VPS54-204ENST00000416400 RFX1P22670 979 aa8.48□□□□□ -1.05
VPS54-204ENST00000416400 ZNF784Q8NCA9 323 aaPredicted RBP8.48□□□□□ -1.05
VPS54-204ENST00000416400 NOD1Q9Y239 953 aa8.48□□□□□ -1.05
VPS54-204ENST00000416400 USP17L3A6NCW0 530 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 USP17L4A6NCW7 530 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 UPP2O95045 317 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 NCOA4Q13772 614 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 CTC1Q2NKJ3 1217 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 USP17L2Q6R6M4 530 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 USP17L1Q7RTZ2 530 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 TRIM50Q86XT4 487 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 DEPDC4Q8N2C3 294 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 ITPKCQ96DU7 683 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 CHIC2Q9UKJ5 165 aa8.47□□□□□ -1.05
VPS54-204ENST00000416400 MAFBQ9Y5Q3 323 aaPredicted RBP8.47□□□□□ -1.05
VPS54-204ENST00000416400 AXIN1O15169 862 aa8.46□□□□□ -1.06
VPS54-204ENST00000416400 TIMP2P16035 220 aa8.46□□□□□ -1.06
VPS54-204ENST00000416400 TSGA10IPQ3SY00 556 aa8.46□□□□□ -1.06
VPS54-204ENST00000416400 PLEKHM2Q8IWE5 1019 aa8.46□□□□□ -1.06
VPS54-204ENST00000416400 CDCA7Q9BWT1 371 aaPredicted RBP8.46□□□□□ -1.06
VPS54-204ENST00000416400 ZFAND3Q9H8U3 227 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms