RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 PTGER2P43116 358 aa24.28■■□□□ 1.48
CHMP3-203ENST00000409225 ZNF784Q8NCA9 323 aaPredicted RBP24.28■■□□□ 1.48
CHMP3-203ENST00000409225 SLIT3O75094 1523 aa24.28■■□□□ 1.48
CHMP3-203ENST00000409225 BRD4O60885 1362 aaPredicted RBP24.28■■□□□ 1.48
CHMP3-203ENST00000409225 NBPF1Q3BBV0 1214 aa24.27■■□□□ 1.48
CHMP3-203ENST00000409225 STK32BQ9NY57 414 aa24.26■■□□□ 1.47
CHMP3-203ENST00000409225 KIAA1210Q9ULL0 1709 aa24.26■■□□□ 1.47
CHMP3-203ENST00000409225 WNK3Q9BYP7 1800 aa24.26■■□□□ 1.47
CHMP3-203ENST00000409225 USP6P35125 1406 aa24.26■■□□□ 1.47
CHMP3-203ENST00000409225 CABP1Q9NZU7 370 aa24.25■■□□□ 1.47
CHMP3-203ENST00000409225 AXIN2Q9Y2T1 843 aa24.25■■□□□ 1.47
CHMP3-203ENST00000409225 WDR17Q8IZU2 1322 aa24.25■■□□□ 1.47
CHMP3-203ENST00000409225 CENPJQ9HC77 1338 aaPredicted RBP24.25■■□□□ 1.47
CHMP3-203ENST00000409225 COL18A1P39060 1754 aa24.24■■□□□ 1.47
CHMP3-203ENST00000409225 AKAP12Q02952 1782 aa24.24■■□□□ 1.47
CHMP3-203ENST00000409225 TXNRD1Q16881 649 aa24.23■■□□□ 1.47
CHMP3-203ENST00000409225 CDCA7Q9BWT1 371 aaPredicted RBP24.23■■□□□ 1.47
CHMP3-203ENST00000409225 FHDC1Q9C0D6 1143 aaPredicted RBP24.23■■□□□ 1.47
CHMP3-203ENST00000409225 BCL9O00512 1426 aa24.22■■□□□ 1.47
CHMP3-203ENST00000409225 SLC15A2Q16348 729 aa24.22■■□□□ 1.47
CHMP3-203ENST00000409225 SYT17Q9BSW7 474 aa24.21■■□□□ 1.47
CHMP3-203ENST00000409225 PIK3C2AO00443 1686 aa24.21■■□□□ 1.47
CHMP3-203ENST00000409225 CPSF1Q10570 1443 aaKnown RBP24.2■■□□□ 1.46
CHMP3-203ENST00000409225 CSB-PGBD3P0DP91 1061 aa24.2■■□□□ 1.46
CHMP3-203ENST00000409225 SOX12O15370 315 aa24.19■■□□□ 1.46
CHMP3-203ENST00000409225 QRICH2Q9H0J4 1663 aa24.18■■□□□ 1.46
CHMP3-203ENST00000409225 MTFR1LQ9H019 292 aa24.18■■□□□ 1.46
CHMP3-203ENST00000409225 SENP3-EIF4A1A0A087X0R7 540 aa24.17■■□□□ 1.46
CHMP3-203ENST00000409225 EXOC5O00471 708 aa24.17■■□□□ 1.46
CHMP3-203ENST00000409225 ARHGEF25Q86VW2 580 aa24.17■■□□□ 1.46
CHMP3-203ENST00000409225 CARD10Q9BWT7 1032 aa24.17■■□□□ 1.46
CHMP3-203ENST00000409225 UTRNP46939 3433 aa24.16■■□□□ 1.46
CHMP3-203ENST00000409225 RGPD5Q99666 1765 aa24.16■■□□□ 1.46
CHMP3-203ENST00000409225 SGIP1Q9BQI5 828 aa24.14■■□□□ 1.45
CHMP3-203ENST00000409225 KCNH5Q8NCM2 988 aa24.13■■□□□ 1.45
CHMP3-203ENST00000409225 ACSBG1Q96GR2 724 aa24.12■■□□□ 1.45
CHMP3-203ENST00000409225 TTC21BQ7Z4L5 1316 aa24.11■■□□□ 1.45
CHMP3-203ENST00000409225 ARXQ96QS3 562 aa24.11■■□□□ 1.45
CHMP3-203ENST00000409225 CHD4Q14839 1912 aa24.11■■□□□ 1.45
CHMP3-203ENST00000409225 TNS2Q63HR2 1409 aa24.1■■□□□ 1.45
CHMP3-203ENST00000409225 C1QTNF8P60827 252 aa24.1■■□□□ 1.45
CHMP3-203ENST00000409225 CCDC7Q96M83 1385 aa24.1■■□□□ 1.45
CHMP3-203ENST00000409225 EVC2Q86UK5 1308 aa24.1■■□□□ 1.45
CHMP3-203ENST00000409225 NHSQ6T4R5 1651 aa24.08■■□□□ 1.45
CHMP3-203ENST00000409225 TRPM1Q7Z4N2 1603 aa24.07■■□□□ 1.44
CHMP3-203ENST00000409225 NFAT5O94916 1531 aa24.06■■□□□ 1.44
CHMP3-203ENST00000409225 ZNF692Q9BU19 519 aaPredicted RBP24.06■■□□□ 1.44
CHMP3-203ENST00000409225 PAPPAQ13219 1627 aa24.05■■□□□ 1.44
CHMP3-203ENST00000409225 TTC21AQ8NDW8 1320 aa24.05■■□□□ 1.44
CHMP3-203ENST00000409225 GPR162Q16538 588 aa24.04■■□□□ 1.44
CHMP3-203ENST00000409225 MAP3K5Q99683 1374 aa24.03■■□□□ 1.44
CHMP3-203ENST00000409225 ZNF827Q17R98 1081 aa24.03■■□□□ 1.44
CHMP3-203ENST00000409225 ABCC6O95255 1503 aa24.03■■□□□ 1.44
CHMP3-203ENST00000409225 NLRP2Q9NX02 1062 aa24.02■■□□□ 1.44
CHMP3-203ENST00000409225 KLHL34Q8N239 644 aa24.01■■□□□ 1.43
CHMP3-203ENST00000409225 BTAF1O14981 1849 aa24■■□□□ 1.43
CHMP3-203ENST00000409225 KTN1Q86UP2 1357 aaKnown RBP24■■□□□ 1.43
CHMP3-203ENST00000409225 LRRC4BQ9NT99 713 aa23.99■■□□□ 1.43
CHMP3-203ENST00000409225 IL2RBP14784 551 aa23.98■■□□□ 1.43
CHMP3-203ENST00000409225 PELP1Q8IZL8 1130 aaKnown RBP23.98■■□□□ 1.43
CHMP3-203ENST00000409225 ERBB3P21860 1342 aa23.98■■□□□ 1.43
CHMP3-203ENST00000409225 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.97■■□□□ 1.43
CHMP3-203ENST00000409225 GIGYF1O75420 1035 aaPredicted RBP23.96■■□□□ 1.43
CHMP3-203ENST00000409225 KAT6BQ8WYB5 2073 aa23.95■■□□□ 1.42
CHMP3-203ENST00000409225 POLD1P28340 1107 aa23.94■■□□□ 1.42
CHMP3-203ENST00000409225 L3MBTL2Q969R5 705 aa23.94■■□□□ 1.42
CHMP3-203ENST00000409225 AKT1S1Q96B36 256 aa23.94■■□□□ 1.42
CHMP3-203ENST00000409225 ANKRD24Q8TF21 1146 aa23.93■■□□□ 1.42
CHMP3-203ENST00000409225 SLC16A10Q8TF71 515 aa23.92■■□□□ 1.42
CHMP3-203ENST00000409225 USP31Q70CQ4 1352 aa23.91■■□□□ 1.42
CHMP3-203ENST00000409225 MON2Q7Z3U7 1717 aa23.91■■□□□ 1.42
CHMP3-203ENST00000409225 NME9Q86XW9 330 aa23.91■■□□□ 1.42
CHMP3-203ENST00000409225 ROCK2O75116 1388 aaKnown RBP23.91■■□□□ 1.42
CHMP3-203ENST00000409225 PNPLA7Q6ZV29 1317 aa23.9■■□□□ 1.42
CHMP3-203ENST00000409225 LTN1O94822 1766 aa23.9■■□□□ 1.42
CHMP3-203ENST00000409225 SLC27A3Q5K4L6 730 aa23.89■■□□□ 1.41
CHMP3-203ENST00000409225 NLGN2Q8NFZ4 835 aa23.89■■□□□ 1.41
CHMP3-203ENST00000409225 KCNQ4P56696 695 aa23.88■■□□□ 1.41
CHMP3-203ENST00000409225 DDX54Q8TDD1 881 aaKnown RBP23.88■■□□□ 1.41
CHMP3-203ENST00000409225 TFCP2L1Q9NZI6 479 aa23.88■■□□□ 1.41
CHMP3-203ENST00000409225 QSER1Q2KHR3 1735 aa23.87■■□□□ 1.41
CHMP3-203ENST00000409225 IFFO2Q5TF58 517 aa23.87■■□□□ 1.41
CHMP3-203ENST00000409225 USP54Q70EL1 1684 aa23.86■■□□□ 1.41
CHMP3-203ENST00000409225 SHANK3Q9BYB0 1731 aa23.85■■□□□ 1.41
CHMP3-203ENST00000409225 SYTL4Q96C24 671 aaPredicted RBP23.85■■□□□ 1.41
CHMP3-203ENST00000409225 COL24A1Q17RW2 1714 aa23.84■■□□□ 1.41
CHMP3-203ENST00000409225 TUBGCP6Q96RT7 1819 aa23.84■■□□□ 1.41
CHMP3-203ENST00000409225 SBNO2Q9Y2G9 1366 aa23.84■■□□□ 1.41
CHMP3-203ENST00000409225 TMC1Q8TDI8 760 aa23.83■■□□□ 1.41
CHMP3-203ENST00000409225 CD163L1Q9NR16 1453 aa23.82■■□□□ 1.4
CHMP3-203ENST00000409225 LTV1Q96GA3 475 aaPredicted RBP23.82■■□□□ 1.4
CHMP3-203ENST00000409225 GOLGB1Q14789 3259 aaKnown RBP23.81■■□□□ 1.4
CHMP3-203ENST00000409225 YBX3P16989 372 aaKnown RBP eCLIP23.81■■□□□ 1.4
CHMP3-203ENST00000409225 PRIM1P49642 420 aaKnown RBP23.81■■□□□ 1.4
CHMP3-203ENST00000409225 HDGFL2Q7Z4V5 671 aaPredicted RBP23.8■■□□□ 1.4
CHMP3-203ENST00000409225 MSH5O43196 834 aa23.79■■□□□ 1.4
CHMP3-203ENST00000409225 SIN3AQ96ST3 1273 aa23.79■■□□□ 1.4
CHMP3-203ENST00000409225 GRIN3BO60391 1043 aa23.78■■□□□ 1.4
CHMP3-203ENST00000409225 ANKRD36BQ8N2N9 1353 aa23.78■■□□□ 1.4
CHMP3-203ENST00000409225 DOT1LQ8TEK3 1739 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms