RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, human

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGB1-205	ENST00000399494	OVOS2	A0A0J9YW53	1432 aa		40.65	■■■■■ 4.1
HMGB1-205	ENST00000399494	CPSF1	Q10570	1443 aa	Known RBP	40.65	■■■■■ 4.1
HMGB1-205	ENST00000399494	OVOS2	Q6IE36	1432 aa		40.65	■■■■■ 4.1
HMGB1-205	ENST00000399494	TTC21A	Q8NDW8	1320 aa		40.65	■■■■■ 4.1
HMGB1-205	ENST00000399494	PEAK1	Q9H792	1746 aa		40.64	■■■■■ 4.1
HMGB1-205	ENST00000399494	AKAP12	Q02952	1782 aa		40.62	■■■■■ 4.09
HMGB1-205	ENST00000399494	LRRC37A3	O60309	1634 aa		40.6	■■■■■ 4.09
HMGB1-205	ENST00000399494	SOX12	O15370	315 aa		40.59	■■■■■ 4.09
HMGB1-205	ENST00000399494	KTN1	Q86UP2	1357 aa	Known RBP	40.59	■■■■■ 4.09
HMGB1-205	ENST00000399494	PLSCR1	O15162	318 aa		40.58	■■■■■ 4.09
HMGB1-205	ENST00000399494	CDCA7	Q9BWT1	371 aa	Predicted RBP	40.58	■■■■■ 4.09
HMGB1-205	ENST00000399494	MARCH10	Q8NA82	808 aa	Predicted RBP	40.57	■■■■■ 4.09
HMGB1-205	ENST00000399494	CARD10	Q9BWT7	1032 aa		40.57	■■■■■ 4.09
HMGB1-205	ENST00000399494	PTF1A	Q7RTS3	328 aa		40.55	■■■■■ 4.08
HMGB1-205	ENST00000399494	BCL11B	Q9C0K0	894 aa	Predicted RBP	40.55	■■■■■ 4.08
HMGB1-205	ENST00000399494	SBF2	Q86WG5	1849 aa		40.54	■■■■■ 4.08
HMGB1-205	ENST00000399494	RGPD5	Q99666	1765 aa		40.53	■■■■■ 4.08
HMGB1-205	ENST00000399494	CSB-PGBD3	P0DP91	1061 aa		40.52	■■■■■ 4.08
HMGB1-205	ENST00000399494	SBNO2	Q9Y2G9	1366 aa		40.51	■■■■■ 4.08
HMGB1-205	ENST00000399494	NFAT5	O94916	1531 aa		40.51	■■■■■ 4.08
HMGB1-205	ENST00000399494	BCL9	O00512	1426 aa		40.49	■■■■■ 4.07
HMGB1-205	ENST00000399494	WNK3	Q9BYP7	1800 aa		40.49	■■■■■ 4.07
HMGB1-205	ENST00000399494	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	40.47	■■■■■ 4.07
HMGB1-205	ENST00000399494	CARD11	Q9BXL7	1154 aa		40.47	■■■■■ 4.07
HMGB1-205	ENST00000399494	EXOC5	O00471	708 aa		40.46	■■■■■ 4.07
HMGB1-205	ENST00000399494	USP31	Q70CQ4	1352 aa		40.46	■■■■■ 4.07
HMGB1-205	ENST00000399494	KCNQ2	O43526	872 aa		40.45	■■■■■ 4.07
HMGB1-205	ENST00000399494	PROM2	Q8N271	834 aa		40.45	■■■■■ 4.07
HMGB1-205	ENST00000399494	SPON1	Q9HCB6	807 aa		40.45	■■■■■ 4.07
HMGB1-205	ENST00000399494	RGPD3	A6NKT7	1758 aa	Predicted RBP	40.45	■■■■■ 4.07
HMGB1-205	ENST00000399494	RGPD4	Q7Z3J3	1758 aa		40.45	■■■■■ 4.07
HMGB1-205	ENST00000399494	MON2	Q7Z3U7	1717 aa		40.43	■■■■■ 4.06
HMGB1-205	ENST00000399494	CCDC7	Q96M83	1385 aa		40.42	■■■■■ 4.06
HMGB1-205	ENST00000399494	CD163L1	Q9NR16	1453 aa		40.42	■■■■■ 4.06
HMGB1-205	ENST00000399494	NME9	Q86XW9	330 aa		40.41	■■■■■ 4.06
HMGB1-205	ENST00000399494	ANO8	Q9HCE9	1232 aa	Predicted RBP	40.4	■■■■■ 4.06
HMGB1-205	ENST00000399494	ABCC6	O95255	1503 aa		40.4	■■■■■ 4.06
HMGB1-205	ENST00000399494	TMC1	Q8TDI8	760 aa		40.39	■■■■■ 4.06
HMGB1-205	ENST00000399494	SLC12A5	Q9H2X9	1139 aa		40.39	■■■■■ 4.06
HMGB1-205	ENST00000399494	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	40.35	■■■■■ 4.05
HMGB1-205	ENST00000399494	PPP1R1B	Q9UD71	204 aa	Predicted RBP	40.34	■■■■■ 4.05
HMGB1-205	ENST00000399494	USP54	Q70EL1	1684 aa		40.34	■■■■■ 4.05
HMGB1-205	ENST00000399494	ERBB3	P21860	1342 aa		40.32	■■■■■ 4.04
HMGB1-205	ENST00000399494	NLRP2	Q9NX02	1062 aa		40.31	■■■■■ 4.04
HMGB1-205	ENST00000399494	TONSL	Q96HA7	1378 aa		40.31	■■■■■ 4.04
HMGB1-205	ENST00000399494	TXNRD1	Q16881	649 aa		40.3	■■■■■ 4.04
HMGB1-205	ENST00000399494	PUS7	Q96PZ0	661 aa	Known RBP	40.3	■■■■■ 4.04
HMGB1-205	ENST00000399494	TNS2	Q63HR2	1409 aa		40.29	■■■■■ 4.04
HMGB1-205	ENST00000399494	PDGFD	Q9GZP0	370 aa	Predicted RBP	40.29	■■■■■ 4.04
HMGB1-205	ENST00000399494	EDC4	Q6P2E9	1401 aa	Known RBP	40.28	■■■■■ 4.04
HMGB1-205	ENST00000399494	TERF2IP	Q9NYB0	399 aa		40.28	■■■■■ 4.04
HMGB1-205	ENST00000399494	ANKRD24	Q8TF21	1146 aa		40.25	■■■■■ 4.03
HMGB1-205	ENST00000399494	IL2RB	P14784	551 aa		40.24	■■■■■ 4.03
HMGB1-205	ENST00000399494	CASZ1	Q86V15	1759 aa		40.24	■■■■■ 4.03
HMGB1-205	ENST00000399494		A0A1W2PP64	1363 aa		40.23	■■■■■ 4.03
HMGB1-205	ENST00000399494	LTN1	O94822	1766 aa		40.23	■■■■■ 4.03
HMGB1-205	ENST00000399494	NINL	Q9Y2I6	1382 aa		40.23	■■■■■ 4.03
HMGB1-205	ENST00000399494	STK32B	Q9NY57	414 aa		40.21	■■■■■ 4.03
HMGB1-205	ENST00000399494	SLC15A2	Q16348	729 aa		40.2	■■■■■ 4.03
HMGB1-205	ENST00000399494	ACSBG1	Q96GR2	724 aa		40.2	■■■■■ 4.03
HMGB1-205	ENST00000399494	ZBTB7A	O95365	584 aa		40.18	■■■■■ 4.02
HMGB1-205	ENST00000399494	TESK2	Q96S53	571 aa		40.18	■■■■■ 4.02
HMGB1-205	ENST00000399494	IP6K1	Q92551	441 aa		40.15	■■■■■ 4.02
HMGB1-205	ENST00000399494	NHS	Q6T4R5	1651 aa		40.15	■■■■■ 4.02
HMGB1-205	ENST00000399494	YY1	P25490	414 aa		40.14	■■■■■ 4.02
HMGB1-205	ENST00000399494	PTGER2	P43116	358 aa		40.14	■■■■■ 4.02
HMGB1-205	ENST00000399494	ST20-MTHFS	A0A0A6YYL1	179 aa		40.13	■■■■■ 4.01
HMGB1-205	ENST00000399494	CLSPN	Q9HAW4	1339 aa		40.13	■■■■■ 4.01
HMGB1-205	ENST00000399494	ATF5	Q9Y2D1	282 aa	Predicted RBP	40.12	■■■■■ 4.01
HMGB1-205	ENST00000399494	DCAF8L1	A6NGE4	600 aa		40.11	■■■■■ 4.01
HMGB1-205	ENST00000399494	CCER1	Q8TC90	406 aa	Predicted RBP	40.09	■■■■■ 4.01
HMGB1-205	ENST00000399494	SLC24A1	O60721	1099 aa		40.06	■■■■■ 4
HMGB1-205	ENST00000399494	LTV1	Q96GA3	475 aa	Predicted RBP	40.05	■■■■■ 4
HMGB1-205	ENST00000399494	COG3	Q96JB2	828 aa		40.04	■■■■■ 4
HMGB1-205	ENST00000399494	MTFR1L	Q9H019	292 aa		40.03	■■■■■ 4
HMGB1-205	ENST00000399494	FBLN1	P23142	703 aa		40.02	■■■■■ 4
HMGB1-205	ENST00000399494	MAP3K19	Q56UN5	1328 aa		40.01	■■■■■ 4
HMGB1-205	ENST00000399494	DDX54	Q8TDD1	881 aa	Known RBP	40.01	■■■■■ 4
HMGB1-205	ENST00000399494	BTAF1	O14981	1849 aa		40	■■■■□ 3.99
HMGB1-205	ENST00000399494	MYOM1	P52179	1685 aa		39.99	■■■■□ 3.99
HMGB1-205	ENST00000399494	SGIP1	Q9BQI5	828 aa		39.99	■■■■□ 3.99
HMGB1-205	ENST00000399494	LRRC4B	Q9NT99	713 aa		39.99	■■■■□ 3.99
HMGB1-205	ENST00000399494	HOXC9	P31274	260 aa		39.98	■■■■□ 3.99
HMGB1-205	ENST00000399494	PAPPA	Q13219	1627 aa		39.96	■■■■□ 3.99
HMGB1-205	ENST00000399494	KAT6B	Q8WYB5	2073 aa		39.95	■■■■□ 3.99
HMGB1-205	ENST00000399494	AMPH	P49418	695 aa		39.95	■■■■□ 3.99
HMGB1-205	ENST00000399494	SYT17	Q9BSW7	474 aa		39.95	■■■■□ 3.99
HMGB1-205	ENST00000399494	ZNF827	Q17R98	1081 aa		39.94	■■■■□ 3.98
HMGB1-205	ENST00000399494	FHDC1	Q9C0D6	1143 aa	Predicted RBP	39.94	■■■■□ 3.98
HMGB1-205	ENST00000399494	FAM208A	Q9UK61	1670 aa	Known RBP	39.94	■■■■□ 3.98
HMGB1-205	ENST00000399494	ANKRD36B	Q8N2N9	1353 aa		39.93	■■■■□ 3.98
HMGB1-205	ENST00000399494	FYB1	O15117	783 aa		39.89	■■■■□ 3.98
HMGB1-205	ENST00000399494	SLC27A3	Q5K4L6	730 aa		39.88	■■■■□ 3.97
HMGB1-205	ENST00000399494	AKT1S1	Q96B36	256 aa		39.88	■■■■□ 3.97
HMGB1-205	ENST00000399494	PRIM1	P49642	420 aa	Known RBP	39.87	■■■■□ 3.97
HMGB1-205	ENST00000399494	ZCRB1	Q8TBF4	217 aa	Known RBP	39.87	■■■■□ 3.97
HMGB1-205	ENST00000399494	TIMELESS	Q9UNS1	1208 aa		39.87	■■■■□ 3.97
HMGB1-205	ENST00000399494	TMF1	P82094	1093 aa		39.85	■■■■□ 3.97
HMGB1-205	ENST00000399494	RRS1	Q15050	365 aa	Known RBP	39.85	■■■■□ 3.97
HMGB1-205	ENST00000399494	ARX	Q96QS3	562 aa		39.85	■■■■□ 3.97

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms