RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KCNH5Q8NCM2 988 aa19.04■□□□□ 0.64
SKA1-202ENST00000398452 ARHGEF10O15013 1369 aa19.04■□□□□ 0.64
SKA1-202ENST00000398452 SOX12O15370 315 aa19.03■□□□□ 0.64
SKA1-202ENST00000398452 OVOS2A0A0J9YW53 1432 aa19.02■□□□□ 0.64
SKA1-202ENST00000398452 OVOS2Q6IE36 1432 aa19.02■□□□□ 0.64
SKA1-202ENST00000398452 PPM1GO15355 546 aaPredicted RBP19.02■□□□□ 0.64
SKA1-202ENST00000398452 MTHFSP49914 203 aa19.02■□□□□ 0.64
SKA1-202ENST00000398452 TNS3Q68CZ2 1445 aa19.01■□□□□ 0.63
SKA1-202ENST00000398452 WDR43Q15061 677 aaKnown RBP eCLIP19.01■□□□□ 0.63
SKA1-202ENST00000398452 AATKQ6ZMQ8 1374 aa19.01■□□□□ 0.63
SKA1-202ENST00000398452 SPATA31A3Q5VYP0 1347 aa19■□□□□ 0.63
SKA1-202ENST00000398452 HAP1P54257 671 aaPredicted RBP19■□□□□ 0.63
SKA1-202ENST00000398452 FAM9BQ8IZU0 186 aa19■□□□□ 0.63
SKA1-202ENST00000398452 USP21Q9UK80 565 aa19■□□□□ 0.63
SKA1-202ENST00000398452 RBM6P78332 1123 aaKnown RBP18.99■□□□□ 0.63
SKA1-202ENST00000398452 UPF1Q92900 1129 aaKnown RBP eCLIP18.99■□□□□ 0.63
SKA1-202ENST00000398452 NUDCQ9Y266 331 aa18.99■□□□□ 0.63
SKA1-202ENST00000398452 PXDNQ92626 1479 aa18.98■□□□□ 0.63
SKA1-202ENST00000398452 PIK3C2AO00443 1686 aa18.98■□□□□ 0.63
SKA1-202ENST00000398452 AMPHP49418 695 aa18.97■□□□□ 0.63
SKA1-202ENST00000398452 CCDC184Q52MB2 194 aa18.97■□□□□ 0.63
SKA1-202ENST00000398452 ZBTB7CA1YPR0 619 aa18.96■□□□□ 0.63
SKA1-202ENST00000398452 RRS1Q15050 365 aaKnown RBP18.96■□□□□ 0.63
SKA1-202ENST00000398452 POLKQ9UBT6 870 aa18.96■□□□□ 0.63
SKA1-202ENST00000398452 TRPM3Q9HCF6 1732 aaPredicted RBP18.96■□□□□ 0.63
SKA1-202ENST00000398452 GCP02774 474 aa18.94■□□□□ 0.62
SKA1-202ENST00000398452 EMILIN1Q9Y6C2 1016 aa18.94■□□□□ 0.62
SKA1-202ENST00000398452 RGS12O14924 1447 aa18.93■□□□□ 0.62
SKA1-202ENST00000398452 DIAPH1O60610 1272 aaKnown RBP18.93■□□□□ 0.62
SKA1-202ENST00000398452 PNISRQ8TF01 805 aaKnown RBP18.93■□□□□ 0.62
SKA1-202ENST00000398452 YTHDC1Q96MU7 727 aaKnown RBP18.93■□□□□ 0.62
SKA1-202ENST00000398452 TRPC5Q9UL62 973 aaPredicted RBP18.93■□□□□ 0.62
SKA1-202ENST00000398452 USP19O94966 1318 aa18.93■□□□□ 0.62
SKA1-202ENST00000398452 FBLN1P23142 703 aa18.92■□□□□ 0.62
SKA1-202ENST00000398452 KIF24Q5T7B8 1368 aa18.92■□□□□ 0.62
SKA1-202ENST00000398452 USP54Q70EL1 1684 aa18.92■□□□□ 0.62
SKA1-202ENST00000398452 CABLES1Q8TDN4 633 aa18.91■□□□□ 0.62
SKA1-202ENST00000398452 MAP3K19Q56UN5 1328 aa18.91■□□□□ 0.62
SKA1-202ENST00000398452 ALS2Q96Q42 1657 aa18.91■□□□□ 0.62
SKA1-202ENST00000398452 CDK12Q9NYV4 1490 aaPredicted RBP18.9■□□□□ 0.62
SKA1-202ENST00000398452 U2SURPO15042 1029 aaKnown RBP18.9■□□□□ 0.62
SKA1-202ENST00000398452 FNBP4Q8N3X1 1017 aaPredicted RBP18.9■□□□□ 0.62
SKA1-202ENST00000398452 FLT4P35916 1363 aa18.9■□□□□ 0.62
SKA1-202ENST00000398452 SMG6Q86US8 1419 aaKnown RBP18.9■□□□□ 0.62
SKA1-202ENST00000398452 PNNQ9H307 717 aaKnown RBP18.89■□□□□ 0.61
SKA1-202ENST00000398452 COL22A1Q8NFW1 1626 aaPredicted RBP18.89■□□□□ 0.61
SKA1-202ENST00000398452 NEFMP07197 916 aa18.88■□□□□ 0.61
SKA1-202ENST00000398452 AKT1S1Q96B36 256 aa18.88■□□□□ 0.61
SKA1-202ENST00000398452 RTL1A6NKG5 1358 aa18.88■□□□□ 0.61
SKA1-202ENST00000398452 SLIT3O75094 1523 aa18.88■□□□□ 0.61
SKA1-202ENST00000398452 MAP2P11137 1827 aaKnown RBP18.88■□□□□ 0.61
SKA1-202ENST00000398452 INSRP06213 1382 aa18.87■□□□□ 0.61
SKA1-202ENST00000398452 U2AF1L5P0DN76 240 aaPredicted RBP18.87■□□□□ 0.61
SKA1-202ENST00000398452 ZC3H6P61129 1189 aaKnown RBP18.87■□□□□ 0.61
SKA1-202ENST00000398452 U2AF1Q01081 240 aaKnown RBP eCLIP18.87■□□□□ 0.61
SKA1-202ENST00000398452 HOXC9P31274 260 aa18.85■□□□□ 0.61
SKA1-202ENST00000398452 ARHGEF25Q86VW2 580 aa18.85■□□□□ 0.61
SKA1-202ENST00000398452 IP6K1Q92551 441 aa18.85■□□□□ 0.61
SKA1-202ENST00000398452 ATRNO75882 1429 aa18.84■□□□□ 0.61
SKA1-202ENST00000398452 HSP90AB2PQ58FF8 381 aa18.84■□□□□ 0.61
SKA1-202ENST00000398452 CHRDL2Q6WN34 429 aa18.84■□□□□ 0.61
SKA1-202ENST00000398452 PRDM11Q9NQV5 511 aa18.84■□□□□ 0.61
SKA1-202ENST00000398452 HNRNPUQ00839 825 aaKnown RBP eCLIP18.83■□□□□ 0.6
SKA1-202ENST00000398452 ADAMTS8Q9UP79 889 aa18.83■□□□□ 0.6
SKA1-202ENST00000398452 NFAT5O94916 1531 aa18.83■□□□□ 0.6
SKA1-202ENST00000398452 BCL9LQ86UU0 1499 aa18.83■□□□□ 0.6
SKA1-202ENST00000398452 LTV1Q96GA3 475 aaPredicted RBP18.82■□□□□ 0.6
SKA1-202ENST00000398452 GJD4Q96KN9 370 aaPredicted RBP18.82■□□□□ 0.6
SKA1-202ENST00000398452 MARF1Q9Y4F3 1742 aaKnown RBP18.82■□□□□ 0.6
SKA1-202ENST00000398452 UNC5CLQ8IV45 518 aa18.81■□□□□ 0.6
SKA1-202ENST00000398452 CCDC9Q9Y3X0 531 aaKnown RBP18.81■□□□□ 0.6
SKA1-202ENST00000398452 IL13P35225 146 aa18.8■□□□□ 0.6
SKA1-202ENST00000398452 EIF4A2Q14240 407 aaKnown RBP18.8■□□□□ 0.6
SKA1-202ENST00000398452 PHRF1Q9P1Y6 1649 aaKnown RBP18.8■□□□□ 0.6
SKA1-202ENST00000398452 BLMP54132 1417 aaPredicted RBP18.8■□□□□ 0.6
SKA1-202ENST00000398452 CPDO75976 1380 aa18.8■□□□□ 0.6
SKA1-202ENST00000398452 KIAA0232Q92628 1395 aa18.8■□□□□ 0.6
SKA1-202ENST00000398452 MAPK8IP3Q9UPT6 1336 aa18.79■□□□□ 0.6
SKA1-202ENST00000398452 COL3A1P02461 1466 aaPredicted RBP18.79■□□□□ 0.6
SKA1-202ENST00000398452 CSB-PGBD3P0DP91 1061 aa18.79■□□□□ 0.6
SKA1-202ENST00000398452 LTN1O94822 1766 aa18.78■□□□□ 0.6
SKA1-202ENST00000398452 FCHSD2O94868 740 aa18.77■□□□□ 0.6
SKA1-202ENST00000398452 RUNDC1Q96C34 613 aa18.77■□□□□ 0.6
SKA1-202ENST00000398452 CHRNA2Q15822 529 aa18.76■□□□□ 0.59
SKA1-202ENST00000398452 CCDC146Q8IYE0 955 aa18.76■□□□□ 0.59
SKA1-202ENST00000398452 ANKRD24Q8TF21 1146 aa18.76■□□□□ 0.59
SKA1-202ENST00000398452 PEAK1Q9H792 1746 aa18.75■□□□□ 0.59
SKA1-202ENST00000398452 CENPBP07199 599 aaPredicted RBP18.75■□□□□ 0.59
SKA1-202ENST00000398452 HMOX1P09601 288 aa18.75■□□□□ 0.59
SKA1-202ENST00000398452 EVA1CP58658 441 aa18.75■□□□□ 0.59
SKA1-202ENST00000398452 SLIT2O94813 1529 aa18.74■□□□□ 0.59
SKA1-202ENST00000398452 ABCC6O95255 1503 aa18.74■□□□□ 0.59
SKA1-202ENST00000398452 FAM83GA6ND36 823 aa18.74■□□□□ 0.59
SKA1-202ENST00000398452 SULT6B1Q6IMI4 303 aa18.74■□□□□ 0.59
SKA1-202ENST00000398452 A0A0G2JS52 829 aa18.73■□□□□ 0.59
SKA1-202ENST00000398452 MYT1Q01538 1121 aa18.73■□□□□ 0.59
SKA1-202ENST00000398452 NGEFQ8N5V2 710 aa18.73■□□□□ 0.59
SKA1-202ENST00000398452 CRYBG1Q9Y4K1 1723 aa18.72■□□□□ 0.59
SKA1-202ENST00000398452 PRKAR2BP31323 418 aa18.72■□□□□ 0.59
SKA1-202ENST00000398452 EYA1Q99502 592 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms