RNA–Protein interactions for RNA: ENST00000394872.6

COL4A6-203, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5 BASIC

Gene COL4A6, Length 6,750 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-203ENST00000394872 SMC2O95347 1197 aa12.37□□□□□ -0.43
COL4A6-203ENST00000394872 PDCP20941 246 aa12.37□□□□□ -0.43
COL4A6-203ENST00000394872 RDXP35241 583 aaKnown RBP12.37□□□□□ -0.43
COL4A6-203ENST00000394872 FKBP4Q02790 459 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL4A6-203ENST00000394872 ZSCAN29Q8IWY8 852 aaPredicted RBP12.37□□□□□ -0.43
COL4A6-203ENST00000394872 LETM1O95202 739 aaPredicted RBP12.37□□□□□ -0.43
COL4A6-203ENST00000394872 STK38Q15208 465 aa12.37□□□□□ -0.43
COL4A6-203ENST00000394872 STK3Q13188 491 aa12.37□□□□□ -0.43
COL4A6-203ENST00000394872 BCL11BQ9C0K0 894 aaPredicted RBP12.37□□□□□ -0.43
COL4A6-203ENST00000394872 BRPF1P55201 1214 aaPredicted RBP12.37□□□□□ -0.43
COL4A6-203ENST00000394872 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.37□□□□□ -0.43
COL4A6-203ENST00000394872 FANCIQ9NVI1 1328 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 NUP133Q8WUM0 1156 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 MCM2P49736 904 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 TRIM22Q8IYM9 498 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 KIAA1107Q9UPP5 1409 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 SOGA3Q5TF21 947 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 SMARCE1Q969G3 411 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 CYP46A1Q9Y6A2 500 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 HECW1Q76N89 1606 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 ERICH3Q5RHP9 1530 aa12.36□□□□□ -0.43
COL4A6-203ENST00000394872 ZC3H6P61129 1189 aaKnown RBP12.35□□□□□ -0.43
COL4A6-203ENST00000394872 ZHX3Q9H4I2 956 aa12.35□□□□□ -0.43
COL4A6-203ENST00000394872 SNAPC4Q5SXM2 1469 aa12.35□□□□□ -0.43
COL4A6-203ENST00000394872 AACSQ86V21 672 aa12.35□□□□□ -0.43
COL4A6-203ENST00000394872 FMNL2Q96PY5 1086 aa12.35□□□□□ -0.43
COL4A6-203ENST00000394872 CCDC39Q9UFE4 941 aa12.35□□□□□ -0.43
COL4A6-203ENST00000394872 FAM13BQ9NYF5 915 aa12.35□□□□□ -0.43
COL4A6-203ENST00000394872 NESP48681 1621 aa12.35□□□□□ -0.43
COL4A6-203ENST00000394872 RNF214Q8ND24 703 aa12.35□□□□□ -0.43
COL4A6-203ENST00000394872 TRIM5Q9C035 493 aa12.34□□□□□ -0.43
COL4A6-203ENST00000394872 SPINK5Q9NQ38 1064 aaPredicted RBP12.34□□□□□ -0.43
COL4A6-203ENST00000394872 RAI14Q9P0K7 980 aa12.34□□□□□ -0.43
COL4A6-203ENST00000394872 RABEP1Q15276 862 aa12.34□□□□□ -0.43
COL4A6-203ENST00000394872 ANKRD1Q15327 319 aa12.34□□□□□ -0.43
COL4A6-203ENST00000394872 MYO6Q9UM54 1294 aa12.34□□□□□ -0.43
COL4A6-203ENST00000394872 IGHMBP2P38935 993 aaKnown RBP12.34□□□□□ -0.43
COL4A6-203ENST00000394872 TDO2P48775 406 aa12.34□□□□□ -0.43
COL4A6-203ENST00000394872 NASPP49321 788 aaPredicted RBP12.34□□□□□ -0.43
COL4A6-203ENST00000394872 BCAR3O75815 825 aa12.33□□□□□ -0.43
COL4A6-203ENST00000394872 RPGRIP1LQ68CZ1 1315 aa12.33□□□□□ -0.43
COL4A6-203ENST00000394872 HSP90B2PQ58FF3 399 aa12.33□□□□□ -0.44
COL4A6-203ENST00000394872 JMYQ8N9B5 988 aa12.33□□□□□ -0.44
COL4A6-203ENST00000394872 EFCAB5A4FU69 1503 aa12.33□□□□□ -0.44
COL4A6-203ENST00000394872 MPHOSPH10O00566 681 aaKnown RBP12.33□□□□□ -0.44
COL4A6-203ENST00000394872 FIBPO43427 364 aa12.33□□□□□ -0.44
COL4A6-203ENST00000394872 PIP4K2AP48426 406 aaPredicted RBP12.33□□□□□ -0.44
COL4A6-203ENST00000394872 STARD3NLO95772 234 aa12.33□□□□□ -0.44
COL4A6-203ENST00000394872 CAVIN1Q6NZI2 390 aaKnown RBP12.33□□□□□ -0.44
COL4A6-203ENST00000394872 FAM43AQ8N2R8 423 aa12.33□□□□□ -0.44
COL4A6-203ENST00000394872 ATAD2Q6PL18 1390 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 PDE3AQ14432 1141 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 WDR63Q8IWG1 891 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 CEP126Q9P2H0 1117 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 CCDC85AQ96PX6 553 aaPredicted RBP12.32□□□□□ -0.44
COL4A6-203ENST00000394872 PDCL3Q9H2J4 239 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 SRGAP3O43295 1099 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 PRPF40AO75400 957 aaKnown RBP12.32□□□□□ -0.44
COL4A6-203ENST00000394872 TSPY26PQ9H489 355 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 LRP2BPQ9P2M1 347 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 GNAT3A8MTJ3 354 aa12.32□□□□□ -0.44
COL4A6-203ENST00000394872 TROQ12816 1431 aaPredicted RBP12.31□□□□□ -0.44
COL4A6-203ENST00000394872 MBD3O95983 291 aa12.31□□□□□ -0.44
COL4A6-203ENST00000394872 KCNH5Q8NCM2 988 aa12.31□□□□□ -0.44
COL4A6-203ENST00000394872 NUDT16Q96DE0 195 aaKnown RBP12.31□□□□□ -0.44
COL4A6-203ENST00000394872 UBAC1Q9BSL1 405 aa12.31□□□□□ -0.44
COL4A6-203ENST00000394872 NOL7Q9UMY1 257 aaKnown RBP12.31□□□□□ -0.44
COL4A6-203ENST00000394872 STIM1Q13586 685 aa12.31□□□□□ -0.44
COL4A6-203ENST00000394872 AEBP1Q8IUX7 1158 aa12.31□□□□□ -0.44
COL4A6-203ENST00000394872 NFKBIBQ15653 356 aa12.31□□□□□ -0.44
COL4A6-203ENST00000394872 SKIDA1Q1XH10 827 aa12.3□□□□□ -0.44
COL4A6-203ENST00000394872 TANGO6Q9C0B7 1094 aa12.3□□□□□ -0.44
COL4A6-203ENST00000394872 CT47B1P0C2W7 299 aaPredicted RBP12.3□□□□□ -0.44
COL4A6-203ENST00000394872 ZNF76P36508 570 aa12.3□□□□□ -0.44
COL4A6-203ENST00000394872 HMGB2P26583 209 aaKnown RBP12.3□□□□□ -0.44
COL4A6-203ENST00000394872 ATF7IPQ6VMQ6 1270 aa12.3□□□□□ -0.44
COL4A6-203ENST00000394872 ZNHIT6Q9NWK9 470 aaKnown RBP12.3□□□□□ -0.44
COL4A6-203ENST00000394872 TMOD2Q9NZR1 351 aa12.3□□□□□ -0.44
COL4A6-203ENST00000394872 ZNF652Q9Y2D9 606 aa12.3□□□□□ -0.44
COL4A6-203ENST00000394872 ZPR1O75312 459 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 TMOD3Q9NYL9 352 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 MRE11P49959 708 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 ERCC4Q92889 916 aaPredicted RBP12.29□□□□□ -0.44
COL4A6-203ENST00000394872 ME1P48163 572 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 SUPT6HQ7KZ85 1726 aaKnown RBP12.29□□□□□ -0.44
COL4A6-203ENST00000394872 TRAK2O60296 914 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 CALRP27797 417 aaKnown RBP12.29□□□□□ -0.44
COL4A6-203ENST00000394872 DACH1Q9UI36 760 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 CTNNA3Q9UI47 895 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 CCP110O43303 1012 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 IDH1O75874 414 aaKnown RBP12.29□□□□□ -0.44
COL4A6-203ENST00000394872 CDKL5O76039 1030 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 SERPINC1P01008 464 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 MATR3P43243 847 aaKnown RBP eCLIP12.29□□□□□ -0.44
COL4A6-203ENST00000394872 ARAP1Q96P48 1450 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 PIBF1Q8WXW3 757 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 ANKRD30BQ9BXX2 1392 aa12.29□□□□□ -0.44
COL4A6-203ENST00000394872 CWC27Q6UX04 472 aaKnown RBP12.28□□□□□ -0.44
COL4A6-203ENST00000394872 SSBP05455 408 aaKnown RBP eCLIP12.28□□□□□ -0.44
COL4A6-203ENST00000394872 MVPQ14764 893 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms