RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 SMC4Q9NTJ3 1288 aa17.3■□□□□ 0.36
SDC1-202ENST00000381150 CDC42BPGQ6DT37 1551 aa17.3■□□□□ 0.36
SDC1-202ENST00000381150 KNDC1Q76NI1 1749 aa17.29■□□□□ 0.36
SDC1-202ENST00000381150 NASPP49321 788 aaPredicted RBP17.29■□□□□ 0.36
SDC1-202ENST00000381150 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.29■□□□□ 0.36
SDC1-202ENST00000381150 TECPR2O15040 1411 aa17.28■□□□□ 0.36
SDC1-202ENST00000381150 WASLO00401 505 aaPredicted RBP17.28■□□□□ 0.36
SDC1-202ENST00000381150 U2SURPO15042 1029 aaKnown RBP17.28■□□□□ 0.36
SDC1-202ENST00000381150 SIRT1Q96EB6 747 aa17.28■□□□□ 0.36
SDC1-202ENST00000381150 MAP2P11137 1827 aaKnown RBP17.27■□□□□ 0.36
SDC1-202ENST00000381150 UBR1Q8IWV7 1749 aa17.27■□□□□ 0.36
SDC1-202ENST00000381150 POLKQ9UBT6 870 aa17.27■□□□□ 0.36
SDC1-202ENST00000381150 FAM135BQ49AJ0 1406 aa17.27■□□□□ 0.35
SDC1-202ENST00000381150 DIAPH1O60610 1272 aaKnown RBP17.27■□□□□ 0.35
SDC1-202ENST00000381150 FBLN1P23142 703 aa17.27■□□□□ 0.35
SDC1-202ENST00000381150 GOLGA6L22H0YM25 854 aa17.26■□□□□ 0.35
SDC1-202ENST00000381150 FOXD4L5Q5VV16 416 aaPredicted RBP17.26■□□□□ 0.35
SDC1-202ENST00000381150 FOXD4L4Q8WXT5 416 aaPredicted RBP17.26■□□□□ 0.35
SDC1-202ENST00000381150 DZIP1LQ8IYY4 767 aaKnown RBP17.25■□□□□ 0.35
SDC1-202ENST00000381150 RBM42Q9BTD8 480 aaKnown RBP17.25■□□□□ 0.35
SDC1-202ENST00000381150 TXNDC2Q86VQ3 553 aa17.25■□□□□ 0.35
SDC1-202ENST00000381150 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.25■□□□□ 0.35
SDC1-202ENST00000381150 MPNDQ8N594 471 aa17.25■□□□□ 0.35
SDC1-202ENST00000381150 TNRQ92752 1358 aa17.24■□□□□ 0.35
SDC1-202ENST00000381150 CPS1P31327 1500 aa17.24■□□□□ 0.35
SDC1-202ENST00000381150 PRDM10Q9NQV6 1147 aa17.24■□□□□ 0.35
SDC1-202ENST00000381150 PPIP5K1Q6PFW1 1433 aa17.24■□□□□ 0.35
SDC1-202ENST00000381150 ZKSCAN2Q63HK3 967 aa17.24■□□□□ 0.35
SDC1-202ENST00000381150 PODXL2Q9NZ53 605 aa17.24■□□□□ 0.35
SDC1-202ENST00000381150 EDC4Q6P2E9 1401 aaKnown RBP17.24■□□□□ 0.35
SDC1-202ENST00000381150 IL16Q14005 1332 aa17.23■□□□□ 0.35
SDC1-202ENST00000381150 CT47B1P0C2W7 299 aaPredicted RBP17.23■□□□□ 0.35
SDC1-202ENST00000381150 SSFA2P28290 1259 aa17.23■□□□□ 0.35
SDC1-202ENST00000381150 XPCQ01831 940 aaPredicted RBP17.23■□□□□ 0.35
SDC1-202ENST00000381150 TMEM2Q9UHN6 1383 aa17.23■□□□□ 0.35
SDC1-202ENST00000381150 MON2Q7Z3U7 1717 aa17.23■□□□□ 0.35
SDC1-202ENST00000381150 TPM2P07951 284 aa17.23■□□□□ 0.35
SDC1-202ENST00000381150 PDCL3Q9H2J4 239 aa17.23■□□□□ 0.35
SDC1-202ENST00000381150 FCHSD2O94868 740 aa17.22■□□□□ 0.35
SDC1-202ENST00000381150 LRRC7Q96NW7 1537 aa17.22■□□□□ 0.35
SDC1-202ENST00000381150 AAMPQ13685 434 aa17.22■□□□□ 0.35
SDC1-202ENST00000381150 MVPQ14764 893 aaKnown RBP17.22■□□□□ 0.35
SDC1-202ENST00000381150 NCKAP5LQ9HCH0 1330 aa17.22■□□□□ 0.35
SDC1-202ENST00000381150 MCTP1Q6DN14 999 aa17.22■□□□□ 0.35
SDC1-202ENST00000381150 CAVIN1Q6NZI2 390 aaKnown RBP17.22■□□□□ 0.35
SDC1-202ENST00000381150 ESF1Q9H501 851 aaKnown RBP17.22■□□□□ 0.35
SDC1-202ENST00000381150 ADAMTS13Q76LX8 1427 aa17.21■□□□□ 0.35
SDC1-202ENST00000381150 AKAP12Q02952 1782 aa17.21■□□□□ 0.35
SDC1-202ENST00000381150 NUDT16Q96DE0 195 aaKnown RBP17.21■□□□□ 0.35
SDC1-202ENST00000381150 RIPK4P57078 832 aa17.21■□□□□ 0.35
SDC1-202ENST00000381150 EXOSC9Q06265 439 aaKnown RBP17.21■□□□□ 0.35
SDC1-202ENST00000381150 HDGFP51858 240 aaKnown RBP17.2■□□□□ 0.34
SDC1-202ENST00000381150 DNTTIP2Q5QJE6 756 aaKnown RBP17.2■□□□□ 0.34
SDC1-202ENST00000381150 ANKRD45Q5TZF3 282 aa17.2■□□□□ 0.34
SDC1-202ENST00000381150 C1orf115Q9H7X2 142 aa17.2■□□□□ 0.34
SDC1-202ENST00000381150 ZRANB1Q9UGI0 708 aa17.2■□□□□ 0.34
SDC1-202ENST00000381150 C3P01024 1663 aa17.19■□□□□ 0.34
SDC1-202ENST00000381150 NME9Q86XW9 330 aa17.19■□□□□ 0.34
SDC1-202ENST00000381150 CCDC61Q9Y6R9 512 aa17.19■□□□□ 0.34
SDC1-202ENST00000381150 PLEKHG5O94827 1062 aa17.19■□□□□ 0.34
SDC1-202ENST00000381150 PRR36Q9H6K5 1346 aa17.19■□□□□ 0.34
SDC1-202ENST00000381150 AATKQ6ZMQ8 1374 aa17.19■□□□□ 0.34
SDC1-202ENST00000381150 ZSCAN30Q86W11 494 aa17.18■□□□□ 0.34
SDC1-202ENST00000381150 ROBO2Q9HCK4 1378 aa17.18■□□□□ 0.34
SDC1-202ENST00000381150 FOXD4L6Q3SYB3 417 aaPredicted RBP17.18■□□□□ 0.34
SDC1-202ENST00000381150 FOXD4L3Q6VB84 417 aaPredicted RBP17.18■□□□□ 0.34
SDC1-202ENST00000381150 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.18■□□□□ 0.34
SDC1-202ENST00000381150 CD2BP2O95400 341 aaKnown RBP17.18■□□□□ 0.34
SDC1-202ENST00000381150 RNF214Q8ND24 703 aa17.18■□□□□ 0.34
SDC1-202ENST00000381150 EMILIN1Q9Y6C2 1016 aa17.18■□□□□ 0.34
SDC1-202ENST00000381150 APBB1O00213 710 aa17.17■□□□□ 0.34
SDC1-202ENST00000381150 IL13P35225 146 aa17.17■□□□□ 0.34
SDC1-202ENST00000381150 CALD1Q05682 793 aaKnown RBP17.17■□□□□ 0.34
SDC1-202ENST00000381150 VIRMAQ69YN4 1812 aaKnown RBP17.17■□□□□ 0.34
SDC1-202ENST00000381150 PTMAP06454 111 aaKnown RBP17.17■□□□□ 0.34
SDC1-202ENST00000381150 SSH1Q8WYL5 1049 aa17.17■□□□□ 0.34
SDC1-202ENST00000381150 LTKP29376 864 aa17.16■□□□□ 0.34
SDC1-202ENST00000381150 CCDC173Q0VFZ6 552 aa17.16■□□□□ 0.34
SDC1-202ENST00000381150 PHACTR3Q96KR7 559 aa17.16■□□□□ 0.34
SDC1-202ENST00000381150 CDK12Q9NYV4 1490 aaPredicted RBP17.16■□□□□ 0.34
SDC1-202ENST00000381150 PRKAR2BP31323 418 aa17.16■□□□□ 0.34
SDC1-202ENST00000381150 SKOR2Q2VWA4 1001 aaPredicted RBP17.16■□□□□ 0.34
SDC1-202ENST00000381150 ZHX1Q9UKY1 873 aaPredicted RBP17.16■□□□□ 0.34
SDC1-202ENST00000381150 NOB1Q9ULX3 412 aaKnown RBP17.15■□□□□ 0.34
SDC1-202ENST00000381150 ITSN1Q15811 1721 aa17.15■□□□□ 0.34
SDC1-202ENST00000381150 UQCRHLA0A096LP55 91 aa17.15■□□□□ 0.34
SDC1-202ENST00000381150 ELL2O00472 640 aaPredicted RBP17.15■□□□□ 0.34
SDC1-202ENST00000381150 UQCRHP07919 91 aa17.15■□□□□ 0.34
SDC1-202ENST00000381150 TRIM27P14373 513 aa17.15■□□□□ 0.34
SDC1-202ENST00000381150 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.14■□□□□ 0.33
SDC1-202ENST00000381150 PLEKHG1Q9ULL1 1385 aa17.14■□□□□ 0.33
SDC1-202ENST00000381150 TMEM57Q8N5G2 664 aa17.14■□□□□ 0.33
SDC1-202ENST00000381150 CHAMP1Q96JM3 812 aa17.13■□□□□ 0.33
SDC1-202ENST00000381150 TOPAZ1Q8N9V7 1692 aa17.13■□□□□ 0.33
SDC1-202ENST00000381150 GAS2L2Q8NHY3 880 aa17.13■□□□□ 0.33
SDC1-202ENST00000381150 NRKQ7Z2Y5 1582 aa17.13■□□□□ 0.33
SDC1-202ENST00000381150 ZNF692Q9BU19 519 aaPredicted RBP17.12■□□□□ 0.33
SDC1-202ENST00000381150 RBM27Q9P2N5 1060 aaKnown RBP17.12■□□□□ 0.33
SDC1-202ENST00000381150 HMOX1P09601 288 aa17.12■□□□□ 0.33
SDC1-202ENST00000381150 PTPRUQ92729 1446 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms