RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 PTPRMP28827 1452 aa26.32■■□□□ 1.8
UPF3A-202ENST00000375299 SENP3Q9H4L4 574 aaPredicted RBP26.32■■□□□ 1.8
UPF3A-202ENST00000375299 FOXD4L1Q9NU39 408 aa26.32■■□□□ 1.8
UPF3A-202ENST00000375299 FAM135BQ49AJ0 1406 aa26.3■■□□□ 1.8
UPF3A-202ENST00000375299 FCHSD2O94868 740 aa26.29■■□□□ 1.8
UPF3A-202ENST00000375299 GLIPR1L2Q4G1C9 344 aa26.29■■□□□ 1.8
UPF3A-202ENST00000375299 RRP9O43818 475 aaKnown RBP26.29■■□□□ 1.8
UPF3A-202ENST00000375299 ARHGAP45Q92619 1136 aa26.29■■□□□ 1.8
UPF3A-202ENST00000375299 MRPL50Q8N5N7 158 aaKnown RBP26.28■■□□□ 1.8
UPF3A-202ENST00000375299 C1orf115Q9H7X2 142 aa26.28■■□□□ 1.8
UPF3A-202ENST00000375299 SSFA2P28290 1259 aa26.27■■□□□ 1.8
UPF3A-202ENST00000375299 HSP90AA2PQ14568 343 aaPredicted RBP26.27■■□□□ 1.8
UPF3A-202ENST00000375299 CLEC17AQ6ZS10 378 aa26.27■■□□□ 1.8
UPF3A-202ENST00000375299 RBM42Q9BTD8 480 aaKnown RBP26.27■■□□□ 1.8
UPF3A-202ENST00000375299 GOLGA6L22H0YM25 854 aa26.27■■□□□ 1.8
UPF3A-202ENST00000375299 GAS2L2Q8NHY3 880 aa26.27■■□□□ 1.8
UPF3A-202ENST00000375299 PRAM1Q96QH2 718 aa26.26■■□□□ 1.79
UPF3A-202ENST00000375299 YTHDC2Q9H6S0 1430 aaKnown RBP26.26■■□□□ 1.79
UPF3A-202ENST00000375299 MINK1Q8N4C8 1332 aaPredicted RBP26.25■■□□□ 1.79
UPF3A-202ENST00000375299 VAMP4O75379 141 aa26.25■■□□□ 1.79
UPF3A-202ENST00000375299 CDC45O75419 566 aa26.25■■□□□ 1.79
UPF3A-202ENST00000375299 PRKAR2BP31323 418 aa26.25■■□□□ 1.79
UPF3A-202ENST00000375299 CCDC173Q0VFZ6 552 aa26.25■■□□□ 1.79
UPF3A-202ENST00000375299 IBTKQ9P2D0 1353 aaPredicted RBP26.25■■□□□ 1.79
UPF3A-202ENST00000375299 SIRT2Q8IXJ6 389 aa26.24■■□□□ 1.79
UPF3A-202ENST00000375299 ABCC4O15439 1325 aa26.24■■□□□ 1.79
UPF3A-202ENST00000375299 HDGFL2Q7Z4V5 671 aaPredicted RBP26.23■■□□□ 1.79
UPF3A-202ENST00000375299 KLHL40Q2TBA0 621 aa26.22■■□□□ 1.79
UPF3A-202ENST00000375299 PPP1R9BQ96SB3 815 aa26.22■■□□□ 1.79
UPF3A-202ENST00000375299 FBXO31Q5XUX0 539 aaPredicted RBP26.21■■□□□ 1.79
UPF3A-202ENST00000375299 BAG4O95429 457 aaKnown RBP26.21■■□□□ 1.79
UPF3A-202ENST00000375299 NASPP49321 788 aaPredicted RBP26.2■■□□□ 1.79
UPF3A-202ENST00000375299 CALD1Q05682 793 aaKnown RBP26.2■■□□□ 1.79
UPF3A-202ENST00000375299 NFE2L2Q16236 605 aa26.2■■□□□ 1.79
UPF3A-202ENST00000375299 AK9Q5TCS8 1911 aa26.19■■□□□ 1.78
UPF3A-202ENST00000375299 TSPYL6Q8N831 410 aa26.19■■□□□ 1.78
UPF3A-202ENST00000375299 DDX49Q9Y6V7 483 aaKnown RBP26.19■■□□□ 1.78
UPF3A-202ENST00000375299 ALKQ9UM73 1620 aa26.19■■□□□ 1.78
UPF3A-202ENST00000375299 TPM2P07951 284 aa26.18■■□□□ 1.78
UPF3A-202ENST00000375299 GSPT1P15170 499 aaKnown RBP26.18■■□□□ 1.78
UPF3A-202ENST00000375299 GNAI1P63096 354 aa26.18■■□□□ 1.78
UPF3A-202ENST00000375299 IFT57Q9NWB7 429 aa26.18■■□□□ 1.78
UPF3A-202ENST00000375299 RABEP1Q15276 862 aa26.17■■□□□ 1.78
UPF3A-202ENST00000375299 CFAP44Q96MT7 982 aa26.17■■□□□ 1.78
UPF3A-202ENST00000375299 THUMPD2Q9BTF0 503 aaKnown RBP26.17■■□□□ 1.78
UPF3A-202ENST00000375299 KNDC1Q76NI1 1749 aa26.16■■□□□ 1.78
UPF3A-202ENST00000375299 ANP32BQ92688 251 aaKnown RBP26.16■■□□□ 1.78
UPF3A-202ENST00000375299 PHACTR3Q96KR7 559 aa26.15■■□□□ 1.78
UPF3A-202ENST00000375299 CDK19Q9BWU1 502 aa26.15■■□□□ 1.78
UPF3A-202ENST00000375299 ARHGEF40Q8TER5 1519 aa26.15■■□□□ 1.78
UPF3A-202ENST00000375299 MAP2P11137 1827 aaKnown RBP26.15■■□□□ 1.78
UPF3A-202ENST00000375299 POLKQ9UBT6 870 aa26.14■■□□□ 1.78
UPF3A-202ENST00000375299 ZSCAN30Q86W11 494 aa26.14■■□□□ 1.77
UPF3A-202ENST00000375299 PLEKHM2Q8IWE5 1019 aa26.14■■□□□ 1.77
UPF3A-202ENST00000375299 MBIPQ9NS73 344 aa26.14■■□□□ 1.77
UPF3A-202ENST00000375299 ZNF853P0CG23 659 aa26.13■■□□□ 1.77
UPF3A-202ENST00000375299 API5Q9BZZ5 524 aaKnown RBP26.13■■□□□ 1.77
UPF3A-202ENST00000375299 NUCB2P80303 420 aa26.13■■□□□ 1.77
UPF3A-202ENST00000375299 HMOX1P09601 288 aa26.12■■□□□ 1.77
UPF3A-202ENST00000375299 ZNF445P59923 1031 aa26.12■■□□□ 1.77
UPF3A-202ENST00000375299 CABP1Q9NZU7 370 aa26.12■■□□□ 1.77
UPF3A-202ENST00000375299 KIF24Q5T7B8 1368 aa26.12■■□□□ 1.77
UPF3A-202ENST00000375299 ELL2O00472 640 aaPredicted RBP26.12■■□□□ 1.77
UPF3A-202ENST00000375299 TWISTNBQ3B726 338 aaPredicted RBP26.12■■□□□ 1.77
UPF3A-202ENST00000375299 TTC22Q5TAA0 569 aa26.11■■□□□ 1.77
UPF3A-202ENST00000375299 DLG5Q8TDM6 1919 aa26.11■■□□□ 1.77
UPF3A-202ENST00000375299 CYP2E1P05181 493 aaPredicted RBP26.1■■□□□ 1.77
UPF3A-202ENST00000375299 STAG3Q9UJ98 1225 aa26.1■■□□□ 1.77
UPF3A-202ENST00000375299 MCTP1Q6DN14 999 aa26.1■■□□□ 1.77
UPF3A-202ENST00000375299 DCTPP1Q9H773 170 aa26.1■■□□□ 1.77
UPF3A-202ENST00000375299 FBLN1P23142 703 aa26.09■■□□□ 1.77
UPF3A-202ENST00000375299 USP26Q9BXU7 913 aa26.08■■□□□ 1.77
UPF3A-202ENST00000375299 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.07■■□□□ 1.76
UPF3A-202ENST00000375299 ATP7BP35670 1465 aa26.07■■□□□ 1.76
UPF3A-202ENST00000375299 KIAA1211Q6ZU35 1233 aa26.07■■□□□ 1.76
UPF3A-202ENST00000375299 LMBRD1Q9NUN5 540 aa26.07■■□□□ 1.76
UPF3A-202ENST00000375299 INTS3Q68E01 1043 aaKnown RBP26.06■■□□□ 1.76
UPF3A-202ENST00000375299 C8orf58Q8NAV2 365 aa26.06■■□□□ 1.76
UPF3A-202ENST00000375299 MSNP26038 577 aaKnown RBP26.06■■□□□ 1.76
UPF3A-202ENST00000375299 CYB5RLQ6IPT4 315 aa26.06■■□□□ 1.76
UPF3A-202ENST00000375299 ZSCAN23Q3MJ62 389 aa26.05■■□□□ 1.76
UPF3A-202ENST00000375299 CAVIN1Q6NZI2 390 aaKnown RBP26.05■■□□□ 1.76
UPF3A-202ENST00000375299 LMOD3Q0VAK6 560 aa26.05■■□□□ 1.76
UPF3A-202ENST00000375299 VSIG10Q8N0Z9 540 aa26.05■■□□□ 1.76
UPF3A-202ENST00000375299 DLC1Q96QB1 1528 aa26.05■■□□□ 1.76
UPF3A-202ENST00000375299 OFD1O75665 1012 aa26.04■■□□□ 1.76
UPF3A-202ENST00000375299 A2ML1A8K2U0 1454 aa26.04■■□□□ 1.76
UPF3A-202ENST00000375299 IL13P35225 146 aa26.04■■□□□ 1.76
UPF3A-202ENST00000375299 CWC22Q9HCG8 908 aaKnown RBP26.04■■□□□ 1.76
UPF3A-202ENST00000375299 CDK12Q9NYV4 1490 aaPredicted RBP26.03■■□□□ 1.76
UPF3A-202ENST00000375299 FAM69CQ0P6D2 419 aa26.03■■□□□ 1.76
UPF3A-202ENST00000375299 RIMS2Q9UQ26 1411 aa26.03■■□□□ 1.76
UPF3A-202ENST00000375299 NCLP19338 710 aaKnown RBP26.03■■□□□ 1.76
UPF3A-202ENST00000375299 AGLP35573 1532 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 HS1BP3Q53T59 392 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.02■■□□□ 1.76
UPF3A-202ENST00000375299 WAPLQ7Z5K2 1190 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 PPP6R1Q9UPN7 881 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 ATP10DQ9P241 1426 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 C16orf71Q8IYS4 520 aaPredicted RBP26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms