RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CFAP74Q9C0B2 1584 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 TJAP1Q5JTD0 557 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 ZFRQ96KR1 1074 aaKnown RBP3.56□□□□□ -1.84
VPS54-202ENST00000354504 KIAA1468Q9P260 1216 aa3.56□□□□□ -1.84
VPS54-202ENST00000354504 NRXN1Q9ULB1 1477 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 NRXN3Q9Y4C0 1643 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 PROX2Q3B8N5 592 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 LIMD1Q9UGP4 676 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 KIAA1107Q9UPP5 1409 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 TRPM2O94759 1503 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 ARHGEF28Q8N1W1 1705 aaKnown RBP3.55□□□□□ -1.84
VPS54-202ENST00000354504 MARF1Q9Y4F3 1742 aaKnown RBP3.55□□□□□ -1.84
VPS54-202ENST00000354504 KIF1BO60333 1816 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 ADGRG1Q9Y653 693 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 PREX1Q8TCU6 1659 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 ZNF644Q9H582 1327 aaPredicted RBP3.55□□□□□ -1.84
VPS54-202ENST00000354504 QPCTQ16769 361 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 PXYLP1Q8TE99 480 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 BEGAINQ9BUH8 593 aa3.55□□□□□ -1.84
VPS54-202ENST00000354504 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.55□□□□□ -1.84
VPS54-202ENST00000354504 KDM5AP29375 1690 aaKnown RBP3.54□□□□□ -1.84
VPS54-202ENST00000354504 SOCS7O14512 581 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 DGAT1O75907 488 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 LRCH3Q96II8 777 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 IRX2Q9BZI1 471 aaPredicted RBP3.54□□□□□ -1.84
VPS54-202ENST00000354504 ZMYND15Q9H091 742 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 SNRKQ9NRH2 765 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 FAM217BQ9NTX9 383 aaPredicted RBP3.54□□□□□ -1.84
VPS54-202ENST00000354504 CLTCQ00610 1675 aaKnown RBP3.54□□□□□ -1.84
VPS54-202ENST00000354504 EFCAB6Q5THR3 1501 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 PLCH2O75038 1416 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 SSTR3P32745 418 aaPredicted RBP3.54□□□□□ -1.84
VPS54-202ENST00000354504 SLC4A3P48751 1232 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 RPIAP49247 311 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 MCM6Q14566 821 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 CRIPAKQ8N1N5 446 aa3.54□□□□□ -1.84
VPS54-202ENST00000354504 SHPRHQ149N8 1683 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 MYSM1Q5VVJ2 828 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 ATP7AQ04656 1500 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 PTPRTO14522 1441 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 GUCA2AQ02747 115 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 TATDN2Q93075 761 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 KCTD12Q96CX2 325 aaKnown RBP3.53□□□□□ -1.84
VPS54-202ENST00000354504 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS54-202ENST00000354504 AXIN2Q9Y2T1 843 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 CCDC141Q6ZP82 1450 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 ADGRB3O60242 1522 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 APBB1O00213 710 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 GPR37L1O60883 481 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 SMCPP49901 116 aaPredicted RBP3.53□□□□□ -1.84
VPS54-202ENST00000354504 ANKRD26Q9UPS8 1709 aa3.53□□□□□ -1.84
VPS54-202ENST00000354504 GGCXP38435 758 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 TUSC1Q2TAM9 212 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 PCDHB15Q9Y5E8 787 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 TMEM131LA2VDJ0 1609 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 TRAPPC8Q9Y2L5 1435 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 CDCA7LQ96GN5 454 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 C9orf84Q5VXU9 1444 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 ASXL1Q8IXJ9 1541 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 ADGRB1O14514 1584 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 NDUFV2P19404 249 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 CCDC82Q8N4S0 544 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 ERBINQ96RT1 1412 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 GPCPD1Q9NPB8 672 aa3.52□□□□□ -1.85
VPS54-202ENST00000354504 RALGAPBQ86X10 1494 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 KNDC1Q76NI1 1749 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 RTEL1-TNFRSF6BF6WH68 1400 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 ACTN4O43707 911 aaKnown RBP3.51□□□□□ -1.85
VPS54-202ENST00000354504 ARXQ96QS3 562 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 USP32Q8NFA0 1604 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 A2MP01023 1474 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 CARMIL2Q6F5E8 1435 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 CARNS1A5YM72 827 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 ZEB1P37275 1124 aaPredicted RBP3.51□□□□□ -1.85
VPS54-202ENST00000354504 CSPP1Q1MSJ5 1256 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 FNBP4Q8N3X1 1017 aaPredicted RBP3.51□□□□□ -1.85
VPS54-202ENST00000354504 RIMS1Q86UR5 1692 aaKnown RBP3.51□□□□□ -1.85
VPS54-202ENST00000354504 PPP1R15AO75807 674 aaPredicted RBP3.51□□□□□ -1.85
VPS54-202ENST00000354504 DDRGK1Q96HY6 314 aa3.51□□□□□ -1.85
VPS54-202ENST00000354504 UGGT1Q9NYU2 1555 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 OATP04181 439 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 ZNF777Q9ULD5 760 aaPredicted RBP3.5□□□□□ -1.85
VPS54-202ENST00000354504 MTUS2Q5JR59 1369 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 SETBP1Q9Y6X0 1596 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 NEXMIFQ5QGS0 1516 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 USP54Q70EL1 1684 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 TOPAZ1Q8N9V7 1692 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 HDGFP51858 240 aaKnown RBP3.5□□□□□ -1.85
VPS54-202ENST00000354504 EPS8L1Q8TE68 723 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 HMX1Q9NP08 348 aaPredicted RBP3.5□□□□□ -1.85
VPS54-202ENST00000354504 QRICH2Q9H0J4 1663 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 RCCD1A6NED2 376 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 MOXD2PA6NHM9 499 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 PPP4CP60510 307 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 NUDT18Q6ZVK8 323 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 MPNDQ8N594 471 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 MTMR14Q8NCE2 650 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 TBC1D2Q9BYX2 928 aa3.5□□□□□ -1.85
VPS54-202ENST00000354504 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.5□□□□□ -1.85
VPS54-202ENST00000354504 MLH3Q9UHC1 1453 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms